Wall clock time and date at job start Tue Mar 31 2020 12:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 N 1.46901 * 109.47123 * 119.99733 * 2 1 3 5 5 C 1.46903 * 110.99829 * 305.62142 * 4 2 1 6 6 C 1.50703 * 109.47064 * 286.57251 * 5 4 2 7 7 H 1.08006 * 119.99543 * 354.68003 * 6 5 4 8 8 C 1.37871 * 120.00135 * 174.68364 * 6 5 4 9 9 N 1.31517 * 120.00041 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99943 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47036 * 59.99832 * 10 8 6 12 12 H 1.48502 * 109.46951 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46972 * 299.99405 * 10 8 6 14 14 C 1.46897 * 110.99855 * 69.56813 * 4 2 1 15 15 N 1.46502 * 109.46982 * 84.92155 * 14 4 2 16 16 N 1.28392 * 119.17145 * 75.64630 * 15 14 4 17 17 C 1.30404 * 122.45463 * 180.02562 * 16 15 14 18 18 C 1.50695 * 119.76858 * 179.97438 * 17 16 15 19 19 F 1.39902 * 109.47369 * 0.02562 * 18 17 16 20 20 F 1.39900 * 109.46990 * 120.02404 * 18 17 16 21 21 F 1.39899 * 109.47287 * 240.02424 * 18 17 16 22 22 C 1.40470 * 120.46333 * 0.02562 * 17 16 15 23 23 C 1.36598 * 118.31598 * 0.27305 * 22 17 16 24 24 C 1.34664 * 119.17267 * 255.66948 * 15 14 4 25 25 O 1.22066 * 120.35041 * 359.97438 * 24 15 14 26 26 H 1.08997 * 109.46900 * 308.95297 * 1 2 3 27 27 H 1.09000 * 109.47171 * 68.94581 * 1 2 3 28 28 H 1.08990 * 109.47573 * 188.94721 * 1 2 3 29 29 H 1.09005 * 109.47164 * 239.99599 * 2 1 3 30 30 H 1.09001 * 109.46963 * 170.64865 * 3 2 1 31 31 H 1.09005 * 109.46900 * 290.63931 * 3 2 1 32 32 H 1.08991 * 109.47667 * 50.64139 * 3 2 1 33 33 H 1.08995 * 109.47149 * 46.56985 * 5 4 2 34 34 H 1.08999 * 109.47346 * 166.57197 * 5 4 2 35 35 H 0.97002 * 119.99547 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47832 * 324.92422 * 14 4 2 37 37 H 1.09000 * 109.47409 * 204.92131 * 14 4 2 38 38 H 1.08002 * 120.84257 * 179.97438 * 22 17 16 39 39 H 1.08005 * 121.09945 * 179.73111 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4420 -0.1082 2.4173 6 6 2.0824 1.2295 2.6852 7 1 2.9013 1.5693 2.0684 8 6 1.6228 2.0194 3.7175 9 7 0.6253 1.6057 4.4682 10 14 2.4161 3.6778 4.0491 11 1 2.2790 4.5409 2.8486 12 1 1.7438 4.3261 5.2037 13 1 3.8556 3.4849 4.3585 14 6 1.7438 -2.1333 1.1250 15 7 2.8151 -2.7977 0.3786 16 7 3.9492 -2.9899 0.9491 17 6 4.9465 -3.5737 0.3449 18 6 6.2519 -3.7678 1.0722 19 9 6.1472 -3.2451 2.3658 20 9 6.5475 -5.1333 1.1436 21 9 7.2729 -3.1050 0.3827 22 6 4.8127 -4.0221 -0.9796 23 6 3.6186 -3.8250 -1.6130 24 6 2.5859 -3.1911 -0.8887 25 8 1.4984 -2.9963 -1.4078 26 1 -0.3633 0.6461 0.7992 27 1 -0.3633 0.3692 -0.9591 28 1 -0.3634 -1.0150 0.1598 29 1 1.8934 -0.5139 -0.8900 30 1 3.1172 1.4470 0.1670 31 1 1.8196 1.9058 -0.9618 32 1 1.5468 2.0023 0.7945 33 1 0.3684 0.0233 2.2832 34 1 1.6240 -0.7736 3.2612 35 1 0.3023 2.1613 5.1948 36 1 0.7929 -2.2956 0.6175 37 1 1.6929 -2.5462 2.1325 38 1 5.6348 -4.5060 -1.4860 39 1 3.4679 -4.1478 -2.6326 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754720165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:02 Heat of formation + Delta-G solvation = -95.516361 kcal Electronic energy + Delta-G solvation = -28139.504196 eV Core-core repulsion = 23669.900919 eV Total energy + Delta-G solvation = -4469.603277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.22910 -47.78333 -47.65034 -42.22352 -38.15544 -37.79478 -34.95730 -32.65869 -31.91987 -30.86903 -28.47249 -27.08077 -26.27444 -25.35154 -23.77004 -23.24255 -22.35244 -19.30312 -19.27775 -18.66277 -18.55093 -17.69325 -16.95105 -16.74087 -16.59552 -15.84541 -15.15736 -14.74038 -14.61723 -14.50579 -14.36794 -14.14003 -14.03204 -13.84623 -13.80434 -13.76645 -13.50132 -13.11898 -12.66691 -12.49497 -12.31240 -11.86677 -11.52484 -11.43376 -11.30011 -11.10335 -10.87717 -10.77167 -10.69063 -10.37956 -10.29103 -9.91919 -9.59082 -9.17097 -8.77441 -8.45894 -7.58604 -6.08905 -4.06308 0.32887 1.13063 1.81792 2.60401 3.12336 3.30372 3.35175 3.38150 3.45695 3.74370 4.19224 4.24924 4.35386 4.39668 4.53765 4.70624 5.19830 5.25879 5.33568 5.46104 5.52173 5.59584 5.62385 5.73982 5.81729 5.96667 6.27255 6.42267 6.47966 6.65489 6.85079 6.98806 7.24768 7.36672 7.41291 7.69753 7.81202 7.96243 8.01863 8.36082 8.96363 9.53526 11.01483 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.004634 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.230761 B = 6041.255256 C = 7354.911146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.091 3.909 3 C -0.142 4.142 4 N -0.536 5.536 5 C 0.192 3.808 6 C -0.503 4.503 7 H 0.073 0.927 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.256 3.744 15 N -0.309 5.309 16 N -0.117 5.117 17 C -0.063 4.063 18 C 0.546 3.454 19 F -0.157 7.157 20 F -0.171 7.171 21 F -0.169 7.169 22 C -0.044 4.044 23 C -0.187 4.187 24 C 0.479 3.521 25 O -0.517 6.517 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.030 0.970 32 H 0.097 0.903 33 H 0.017 0.983 34 H 0.029 0.971 35 H 0.262 0.738 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.157 0.843 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.032 -12.234 -10.027 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.018 4.018 3 C -0.199 4.199 4 N -0.261 5.261 5 C 0.068 3.932 6 C -0.542 4.542 7 H 0.091 0.909 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.202 1.202 14 C 0.047 3.953 15 N -0.133 5.133 16 N 0.053 4.947 17 C -0.233 4.233 18 C 0.489 3.511 19 F -0.138 7.138 20 F -0.153 7.153 21 F -0.150 7.150 22 C -0.067 4.067 23 C -0.217 4.217 24 C 0.277 3.723 25 O -0.394 6.394 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.116 0.884 33 H 0.034 0.966 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.126 0.874 38 H 0.174 0.826 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.473 -11.568 -9.319 16.629 hybrid contribution -0.025 0.411 -0.481 0.633 sum 7.448 -11.157 -9.800 16.613 Atomic orbital electron populations 1.22406 0.97792 1.01379 1.02121 1.21512 0.92680 0.96125 0.91448 1.22195 1.01769 0.95016 1.00888 1.61996 1.60098 0.98462 1.05555 1.19911 0.94297 0.95209 0.83766 1.21246 1.17251 1.01299 1.14358 0.90900 1.24949 0.95215 0.98451 0.95958 1.69935 1.26318 1.37977 1.19514 0.86602 0.79610 0.83765 0.77749 1.20213 1.21402 1.20152 1.22734 0.85096 0.90467 0.96986 1.47572 1.08945 1.44216 1.12558 1.70654 0.92072 1.03091 1.28840 1.21360 0.95295 1.11008 0.95630 1.17197 0.82487 0.74109 0.77283 1.93291 1.96059 1.86306 1.38155 1.93227 1.94005 1.31817 1.96242 1.93239 1.61493 1.80790 1.79492 1.21841 0.98891 0.93852 0.92095 1.22660 0.92695 1.03542 1.02770 1.18178 0.90595 0.81595 0.81899 1.91008 1.25090 1.56416 1.66925 0.90705 0.93130 0.93533 0.92745 0.92766 0.95099 0.88434 0.96567 0.95349 0.92823 0.88369 0.87353 0.82550 0.81319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 8.32 37.16 0.31 -2.95 16 2 C 0.09 1.75 2.90 -67.71 -0.20 1.55 16 3 C -0.14 -2.79 7.70 37.16 0.29 -2.50 16 4 N -0.54 -10.90 4.59 -231.96 -1.06 -11.97 16 5 C 0.19 4.56 4.47 -4.97 -0.02 4.54 16 6 C -0.50 -13.04 6.52 -34.44 -0.22 -13.26 16 7 H 0.07 1.89 5.61 -52.48 -0.29 1.60 16 8 C 0.06 1.49 5.46 -17.82 -0.10 1.39 16 9 N -0.90 -25.24 13.29 55.43 0.74 -24.51 16 10 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.26 4.50 5.47 -63.32 -0.35 4.16 16 15 N -0.31 -5.00 3.46 -66.35 -0.23 -5.23 16 16 N -0.12 -1.84 10.27 33.72 0.35 -1.49 16 17 C -0.06 -0.80 6.35 -82.36 -0.52 -1.32 16 18 C 0.55 6.45 3.32 36.00 0.12 6.56 16 19 F -0.16 -2.22 16.85 2.25 0.04 -2.18 16 20 F -0.17 -1.80 17.24 2.25 0.04 -1.76 16 21 F -0.17 -1.92 17.24 2.25 0.04 -1.88 16 22 C -0.04 -0.43 9.74 -39.33 -0.38 -0.81 16 23 C -0.19 -2.07 10.13 -39.06 -0.40 -2.47 16 24 C 0.48 7.32 6.99 -15.20 -0.11 7.21 16 25 O -0.52 -9.16 15.91 4.86 0.08 -9.08 16 26 H 0.07 1.51 6.50 -51.93 -0.34 1.17 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.82 6.22 -51.93 -0.32 0.49 16 29 H 0.05 1.05 7.01 -51.93 -0.36 0.69 16 30 H 0.05 1.10 7.35 -51.93 -0.38 0.72 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.10 2.16 5.61 -51.93 -0.29 1.87 16 33 H 0.02 0.41 5.70 -51.93 -0.30 0.11 16 34 H 0.03 0.72 7.58 -51.93 -0.39 0.33 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.10 1.70 4.83 -51.93 -0.25 1.45 16 37 H 0.11 1.82 7.46 -51.93 -0.39 1.44 16 38 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.17 1.39 8.06 -52.48 -0.42 0.96 16 LS Contribution 331.65 15.07 5.00 5.00 Total: -1.00 -29.10 331.65 -5.77 -34.87 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.15 Total: 0.23 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -1.58 Total: 2.11 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.21 Total: -43.20 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.08 Total: -9.08 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.12 Total: -5.83 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.10 -5.77 -34.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754720165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.646 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds