Wall clock time and date at job start Tue Mar 31 2020 12:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 N 1.46901 * 109.47123 * 119.99733 * 2 1 3 5 5 C 1.46903 * 110.99829 * 305.62142 * 4 2 1 6 6 C 1.50703 * 109.47064 * 286.57251 * 5 4 2 7 7 H 1.08006 * 119.99543 * 354.68003 * 6 5 4 8 8 C 1.37871 * 120.00135 * 174.68364 * 6 5 4 9 9 N 1.31517 * 120.00041 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99943 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47036 * 59.99832 * 10 8 6 12 12 H 1.48502 * 109.46951 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46972 * 299.99405 * 10 8 6 14 14 C 1.46897 * 110.99855 * 69.56813 * 4 2 1 15 15 N 1.46502 * 109.46982 * 84.92155 * 14 4 2 16 16 N 1.28392 * 119.17145 * 75.64630 * 15 14 4 17 17 C 1.30404 * 122.45463 * 180.02562 * 16 15 14 18 18 C 1.50695 * 119.76858 * 179.97438 * 17 16 15 19 19 F 1.39902 * 109.47369 * 0.02562 * 18 17 16 20 20 F 1.39900 * 109.46990 * 120.02404 * 18 17 16 21 21 F 1.39899 * 109.47287 * 240.02424 * 18 17 16 22 22 C 1.40470 * 120.46333 * 0.02562 * 17 16 15 23 23 C 1.36598 * 118.31598 * 0.27305 * 22 17 16 24 24 C 1.34664 * 119.17267 * 255.66948 * 15 14 4 25 25 O 1.22066 * 120.35041 * 359.97438 * 24 15 14 26 26 H 1.08997 * 109.46900 * 308.95297 * 1 2 3 27 27 H 1.09000 * 109.47171 * 68.94581 * 1 2 3 28 28 H 1.08990 * 109.47573 * 188.94721 * 1 2 3 29 29 H 1.09005 * 109.47164 * 239.99599 * 2 1 3 30 30 H 1.09001 * 109.46963 * 170.64865 * 3 2 1 31 31 H 1.09005 * 109.46900 * 290.63931 * 3 2 1 32 32 H 1.08991 * 109.47667 * 50.64139 * 3 2 1 33 33 H 1.08995 * 109.47149 * 46.56985 * 5 4 2 34 34 H 1.08999 * 109.47346 * 166.57197 * 5 4 2 35 35 H 0.97002 * 119.99547 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47832 * 324.92422 * 14 4 2 37 37 H 1.09000 * 109.47409 * 204.92131 * 14 4 2 38 38 H 1.08002 * 120.84257 * 179.97438 * 22 17 16 39 39 H 1.08005 * 121.09945 * 179.73111 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4420 -0.1082 2.4173 6 6 2.0824 1.2295 2.6852 7 1 2.9013 1.5693 2.0684 8 6 1.6228 2.0194 3.7175 9 7 0.6253 1.6057 4.4682 10 14 2.4161 3.6778 4.0491 11 1 2.2790 4.5409 2.8486 12 1 1.7438 4.3261 5.2037 13 1 3.8556 3.4849 4.3585 14 6 1.7438 -2.1333 1.1250 15 7 2.8151 -2.7977 0.3786 16 7 3.9492 -2.9899 0.9491 17 6 4.9465 -3.5737 0.3449 18 6 6.2519 -3.7678 1.0722 19 9 6.1472 -3.2451 2.3658 20 9 6.5475 -5.1333 1.1436 21 9 7.2729 -3.1050 0.3827 22 6 4.8127 -4.0221 -0.9796 23 6 3.6186 -3.8250 -1.6130 24 6 2.5859 -3.1911 -0.8887 25 8 1.4984 -2.9963 -1.4078 26 1 -0.3633 0.6461 0.7992 27 1 -0.3633 0.3692 -0.9591 28 1 -0.3634 -1.0150 0.1598 29 1 1.8934 -0.5139 -0.8900 30 1 3.1172 1.4470 0.1670 31 1 1.8196 1.9058 -0.9618 32 1 1.5468 2.0023 0.7945 33 1 0.3684 0.0233 2.2832 34 1 1.6240 -0.7736 3.2612 35 1 0.3023 2.1613 5.1948 36 1 0.7929 -2.2956 0.6175 37 1 1.6929 -2.5462 2.1325 38 1 5.6348 -4.5060 -1.4860 39 1 3.4679 -4.1478 -2.6326 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754720165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:01 Heat of formation + Delta-G solvation = -114.131900 kcal Electronic energy + Delta-G solvation = -28140.311426 eV Core-core repulsion = 23669.900919 eV Total energy + Delta-G solvation = -4470.410507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.19253 -48.69877 -48.67069 -43.34472 -39.61088 -39.08301 -36.09056 -34.64745 -33.01780 -32.35969 -30.08528 -28.48062 -27.84976 -26.60776 -24.84819 -24.54455 -24.09340 -20.76525 -20.33444 -19.72826 -19.60075 -18.82447 -18.45041 -18.03055 -17.93567 -17.15588 -16.72474 -16.53472 -15.71235 -15.54955 -15.47197 -15.20969 -15.08508 -15.06564 -14.84803 -14.79491 -14.73832 -14.38664 -14.24994 -14.09063 -13.59995 -13.35599 -13.13550 -13.12340 -12.71154 -12.65823 -12.60136 -12.48719 -12.10869 -12.06595 -11.73709 -11.38833 -11.10047 -10.97369 -10.50828 -9.92455 -9.24630 -8.14489 -6.16947 -0.63502 0.10317 0.69413 1.43633 1.44832 1.51874 1.56538 2.06901 2.42537 2.47274 2.75495 3.09605 3.16637 3.18906 3.30883 3.56264 3.68624 3.92392 4.04245 4.09222 4.22131 4.36310 4.40213 4.47780 4.71983 4.76893 4.83048 4.85200 4.91281 5.04870 5.14852 5.21692 5.46031 5.64850 5.72682 6.04567 6.17898 6.29459 6.47639 6.80940 6.91306 7.46093 8.95710 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.004634 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.230761 B = 6041.255256 C = 7354.911146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 C -0.134 4.134 4 N -0.543 5.543 5 C 0.208 3.792 6 C -0.504 4.504 7 H 0.071 0.929 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.953 3.047 11 H -0.268 1.268 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.263 3.737 15 N -0.320 5.320 16 N -0.165 5.165 17 C -0.046 4.046 18 C 0.551 3.449 19 F -0.174 7.174 20 F -0.159 7.159 21 F -0.162 7.162 22 C -0.029 4.029 23 C -0.176 4.176 24 C 0.467 3.533 25 O -0.552 6.552 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.001 0.999 34 H 0.006 0.994 35 H 0.262 0.738 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.207 0.793 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.926 -13.020 -12.130 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.015 4.015 3 C -0.191 4.191 4 N -0.269 5.269 5 C 0.083 3.917 6 C -0.542 4.542 7 H 0.089 0.911 8 C -0.191 4.191 9 N -0.573 5.573 10 Si 0.779 3.221 11 H -0.193 1.193 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.053 3.947 15 N -0.142 5.142 16 N 0.008 4.992 17 C -0.217 4.217 18 C 0.495 3.505 19 F -0.155 7.155 20 F -0.140 7.140 21 F -0.143 7.143 22 C -0.051 4.051 23 C -0.206 4.206 24 C 0.267 3.733 25 O -0.432 6.432 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.018 0.982 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.224 0.776 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 9.394 -12.368 -11.433 19.286 hybrid contribution -0.490 0.524 0.112 0.726 sum 8.904 -11.845 -11.321 18.648 Atomic orbital electron populations 1.22280 0.97095 1.01085 1.02230 1.21511 0.93207 0.95793 0.91011 1.22052 1.00658 0.95093 1.01301 1.61876 1.60259 1.00096 1.04628 1.19532 0.93315 0.94215 0.84665 1.21502 1.16820 1.02025 1.13903 0.91112 1.25679 0.95746 1.01708 0.95955 1.70051 1.27790 1.39253 1.20202 0.85669 0.78585 0.80066 0.77744 1.19259 1.21317 1.19947 1.22512 0.86099 0.88755 0.97284 1.47208 1.08971 1.45108 1.12948 1.70583 0.92686 1.05702 1.30218 1.21839 0.94493 1.08594 0.96785 1.17103 0.82343 0.74529 0.76555 1.93264 1.96141 1.86659 1.39449 1.93257 1.93868 1.30777 1.96135 1.93258 1.61091 1.80778 1.79218 1.22286 0.99796 0.92585 0.90446 1.22943 0.91525 1.02329 1.03761 1.18863 0.91299 0.81586 0.81517 1.90986 1.26557 1.58257 1.67424 0.93095 0.91126 0.93279 0.92190 0.93764 0.92467 0.91122 0.98153 0.97638 0.92961 0.88367 0.87716 0.77605 0.77912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.19 8.32 71.98 0.60 -5.59 16 2 C 0.09 3.59 2.90 44.92 0.13 3.72 16 3 C -0.13 -5.23 7.70 71.98 0.55 -4.67 16 4 N -0.54 -22.64 4.59 -887.80 -4.08 -26.71 16 5 C 0.21 10.28 4.47 85.56 0.38 10.66 16 6 C -0.50 -26.76 6.52 25.60 0.17 -26.59 16 7 H 0.07 3.73 5.61 -2.91 -0.02 3.71 16 8 C 0.01 0.38 5.46 84.65 0.46 0.85 16 9 N -0.93 -53.81 13.29 21.45 0.28 -53.53 16 10 Si 0.95 43.34 29.54 68.60 2.03 45.37 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 12 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 14 C 0.26 9.52 5.47 170.81 0.93 10.45 16 15 N -0.32 -10.26 3.46 -481.96 -1.67 -11.93 16 16 N -0.16 -5.06 10.27 -47.22 -0.48 -5.55 16 17 C -0.05 -1.04 6.35 43.31 0.27 -0.77 16 18 C 0.55 11.72 3.32 71.23 0.24 11.96 16 19 F -0.17 -4.77 16.85 44.97 0.76 -4.01 16 20 F -0.16 -2.86 17.24 44.97 0.78 -2.09 16 21 F -0.16 -3.22 17.24 44.97 0.78 -2.44 16 22 C -0.03 -0.44 9.74 22.43 0.22 -0.22 16 23 C -0.18 -3.28 10.13 22.61 0.23 -3.06 16 24 C 0.47 13.64 6.99 84.98 0.59 14.23 16 25 O -0.55 -19.15 15.91 -5.53 -0.09 -19.24 16 26 H 0.05 2.11 6.50 -2.39 -0.02 2.09 16 27 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.05 1.75 6.22 -2.39 -0.01 1.74 16 29 H 0.06 2.28 7.01 -2.38 -0.02 2.26 16 30 H 0.04 1.78 7.35 -2.39 -0.02 1.76 16 31 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.07 3.16 5.61 -2.39 -0.01 3.14 16 33 H 0.00 0.04 5.70 -2.39 -0.01 0.03 16 34 H 0.01 0.30 7.58 -2.39 -0.02 0.28 16 35 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.10 3.51 4.83 -2.39 -0.01 3.49 16 37 H 0.10 3.74 7.46 -2.39 -0.02 3.73 16 38 H 0.21 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.20 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -64.68 331.65 4.19 -60.49 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.11 Total: 8.67 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 4.78 Total: 10.97 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -5.94 Total: -97.72 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.09 Total: -19.24 kcal Atomic # 9 Polarization: -10.85 SS G_CDS: 2.31 Total: -8.54 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -64.68 4.19 -60.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754720165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.643 kcal (2) G-P(sol) polarization free energy of solvation -64.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds