Wall clock time and date at job start Tue Mar 31 2020 14:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35105 * 120.51862 * 2 1 4 4 O 1.21301 * 120.15133 * 1.71365 * 3 2 1 5 5 C 1.50763 * 119.69856 * 181.70100 * 3 2 1 6 6 O 1.43002 * 109.63202 * 328.68527 * 5 3 2 7 7 C 1.35989 * 116.73577 * 46.44000 * 6 5 3 8 8 C 1.38532 * 120.63716 * 147.14793 * 7 6 5 9 9 C 1.38296 * 120.00533 * 180.02562 * 8 7 6 10 10 C 1.38222 * 120.32499 * 359.97438 * 9 8 7 11 11 C 1.38856 * 120.11383 * 0.02562 * 10 9 8 12 12 N 1.40118 * 120.15744 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99736 * 310.66788 * 12 11 10 14 14 O 1.21598 * 119.99797 * 5.02167 * 13 12 11 15 15 N 1.34773 * 120.00320 * 185.02595 * 13 12 11 16 16 C 1.46499 * 119.99913 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.46953 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.47263 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00038 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99906 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99843 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00203 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47167 * 89.99588 * 22 20 18 24 24 H 1.48501 * 109.47013 * 209.99634 * 22 20 18 25 25 H 1.48502 * 109.46991 * 329.99593 * 22 20 18 26 26 C 1.39069 * 119.69298 * 359.96966 * 11 10 9 27 27 H 1.08998 * 109.46962 * 356.09503 * 1 2 3 28 28 H 1.08997 * 109.46893 * 116.09587 * 1 2 3 29 29 H 1.09003 * 109.47465 * 236.09464 * 1 2 3 30 30 H 1.08996 * 109.44703 * 208.63631 * 5 3 2 31 31 H 1.08996 * 109.41626 * 88.71427 * 5 3 2 32 32 H 1.07997 * 119.99574 * 0.02562 * 8 7 6 33 33 H 1.08004 * 119.83738 * 179.97438 * 9 8 7 34 34 H 1.08000 * 119.95013 * 179.97438 * 10 9 8 35 35 H 0.96993 * 120.00564 * 130.66539 * 12 11 10 36 36 H 0.97002 * 119.99798 * 0.02562 * 15 13 12 37 37 H 1.09005 * 109.47530 * 299.99793 * 16 15 13 38 38 H 1.08996 * 109.47476 * 60.00516 * 16 15 13 39 39 H 1.08994 * 109.47158 * 300.00107 * 17 16 15 40 40 H 1.09006 * 109.47237 * 60.00054 * 17 16 15 41 41 H 0.96999 * 119.99698 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1510 1.1639 0.0000 4 8 1.5573 2.2212 0.0314 5 6 3.6580 1.1426 -0.0389 6 8 4.1395 -0.0252 0.6315 7 6 3.5319 -1.2020 0.3229 8 6 4.2472 -2.3883 0.3277 9 6 3.6163 -3.5776 0.0113 10 6 2.2721 -3.5905 -0.3103 11 6 1.5462 -2.4068 -0.3180 12 7 0.1837 -2.4187 -0.6444 13 6 -0.2382 -3.0590 -1.7528 14 8 0.5489 -3.7025 -2.4198 15 7 -1.5323 -2.9859 -2.1220 16 6 -1.9906 -3.6814 -3.3272 17 6 -3.4888 -3.4373 -3.5182 18 6 -3.9602 -4.1522 -4.7583 19 1 -3.2612 -4.7239 -5.3507 20 6 -5.2841 -4.0773 -5.1360 21 7 -5.6956 -4.7016 -6.2180 22 14 -6.4934 -3.0890 -4.1110 23 1 -6.5313 -1.6887 -4.6037 24 1 -7.8463 -3.6907 -4.2250 25 1 -6.0639 -3.1022 -2.6895 26 6 2.1779 -1.2093 -0.0001 27 1 -0.3633 1.0253 0.0700 28 1 -0.3633 -0.4520 -0.9229 29 1 -0.3634 -0.5733 0.8529 30 1 4.0464 2.0319 0.4574 31 1 3.9936 1.1299 -1.0758 32 1 5.2977 -2.3844 0.5786 33 1 4.1767 -4.5009 0.0155 34 1 1.7856 -4.5227 -0.5569 35 1 -0.4560 -1.9663 -0.0726 36 1 -2.1601 -2.4722 -1.5902 37 1 -1.4478 -3.3032 -4.1936 38 1 -1.8069 -4.7506 -3.2217 39 1 -4.0319 -3.8151 -2.6520 40 1 -3.6722 -2.3680 -3.6239 41 1 -6.6269 -4.6486 -6.4839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881263062.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:13 Heat of formation + Delta-G solvation = -38.882188 kcal Electronic energy + Delta-G solvation = -26531.230447 eV Core-core repulsion = 22605.939752 eV Total energy + Delta-G solvation = -3925.290695 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.05627 -40.28224 -39.14157 -37.97602 -36.15461 -35.23080 -34.41233 -32.86398 -30.76874 -30.32430 -29.96437 -28.71338 -26.55186 -25.00085 -23.84096 -22.77761 -21.21147 -20.89167 -19.94817 -19.17291 -18.47000 -17.67584 -17.49657 -16.97255 -16.73495 -15.87171 -15.69366 -15.39779 -15.33529 -15.06505 -14.66412 -14.58019 -14.16863 -14.03210 -13.87919 -13.54037 -13.28765 -12.86542 -12.71117 -12.62237 -12.47327 -11.94481 -11.56220 -11.52725 -11.29875 -10.75230 -10.56019 -10.46060 -10.42290 -10.11818 -10.02370 -9.85498 -9.39218 -8.79044 -8.65495 -8.44594 -8.07098 -6.15816 -4.16493 0.71675 0.91948 1.91921 2.11436 2.58521 2.87849 3.14871 3.21238 3.28506 3.29883 3.44937 3.55036 4.22040 4.32890 4.41084 4.49825 4.61366 4.63072 4.77307 4.87963 4.96272 5.06412 5.16952 5.26388 5.27887 5.43904 5.80196 5.90967 5.94474 6.09597 6.13323 6.19157 6.42392 6.47647 6.53393 6.60341 6.75715 6.95783 7.10778 7.15839 7.31652 7.60554 7.98142 8.38697 8.60688 8.88404 9.43880 10.97164 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.019409 B = 0.002920 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.305466 B = 9587.941820 C =10655.457014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.547 5.547 3 C 0.487 3.513 4 O -0.513 6.513 5 C 0.053 3.947 6 O -0.301 6.301 7 C 0.087 3.913 8 C -0.118 4.118 9 C -0.093 4.093 10 C -0.098 4.098 11 C 0.173 3.827 12 N -0.706 5.706 13 C 0.697 3.303 14 O -0.573 6.573 15 N -0.735 5.735 16 C 0.147 3.853 17 C -0.021 4.021 18 C -0.524 4.524 19 H 0.076 0.924 20 C 0.070 3.930 21 N -0.897 5.897 22 Si 0.882 3.118 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.267 1.267 26 C 0.072 3.928 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.406 0.594 36 H 0.393 0.607 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.022 0.978 40 H 0.017 0.983 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.847 8.489 17.898 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.273 5.273 3 C 0.276 3.724 4 O -0.388 6.388 5 C -0.025 4.025 6 O -0.215 6.215 7 C 0.041 3.959 8 C -0.137 4.137 9 C -0.113 4.113 10 C -0.119 4.119 11 C 0.076 3.924 12 N -0.363 5.363 13 C 0.398 3.602 14 O -0.449 6.449 15 N -0.389 5.389 16 C 0.025 3.975 17 C -0.059 4.059 18 C -0.562 4.562 19 H 0.095 0.905 20 C -0.132 4.132 21 N -0.535 5.535 22 Si 0.710 3.290 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.191 1.191 26 C -0.025 4.025 27 H 0.117 0.883 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.163 0.837 31 H 0.118 0.882 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.248 0.752 36 H 0.226 0.774 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.036 0.964 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.077 8.530 17.232 27.086 hybrid contribution -1.723 1.003 0.719 2.119 sum 17.354 9.533 17.951 26.726 Atomic orbital electron populations 1.22298 0.77766 1.05423 1.02478 1.45401 1.07421 1.04241 1.70229 1.21581 0.91382 0.83359 0.76103 1.90774 1.70729 1.29378 1.47882 1.23192 0.89084 0.89124 1.01141 1.86237 1.58640 1.13186 1.63434 1.18352 0.88252 0.87025 1.02320 1.20525 1.00352 0.89674 1.03196 1.20918 0.94030 0.97715 0.98597 1.21159 0.94459 0.97279 0.98987 1.16739 0.84077 0.91044 1.00533 1.43442 1.06191 1.59586 1.27039 1.16033 0.83452 0.80153 0.80593 1.90954 1.53825 1.45111 1.55051 1.45567 1.07128 1.55550 1.30624 1.21470 0.96693 0.95927 0.83407 1.19803 0.90437 0.97248 0.98442 1.20888 0.95332 1.31900 1.08105 0.90545 1.24998 0.98220 0.95159 0.94861 1.69902 1.16650 1.42886 1.24096 0.86752 0.80625 0.80482 0.81189 1.20221 1.21233 1.19125 1.18032 0.90860 0.85268 1.08301 0.88312 0.89985 0.91018 0.83676 0.88190 0.84159 0.84299 0.84113 0.75204 0.77443 0.91891 0.91770 0.95950 0.96433 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 8.70 59.84 0.52 1.08 16 2 N -0.55 -6.00 3.12 -120.41 -0.38 -6.37 16 3 C 0.49 5.45 7.67 -10.81 -0.08 5.37 16 4 O -0.51 -7.03 16.51 5.54 0.09 -6.94 16 5 C 0.05 0.42 7.17 36.04 0.26 0.68 16 6 O -0.30 -2.80 10.45 -19.71 -0.21 -3.01 16 7 C 0.09 0.88 6.44 -39.11 -0.25 0.63 16 8 C -0.12 -1.00 10.00 -39.45 -0.39 -1.39 16 9 C -0.09 -0.81 10.03 -39.57 -0.40 -1.20 16 10 C -0.10 -1.10 8.71 -39.36 -0.34 -1.44 16 11 C 0.17 2.03 5.96 -83.53 -0.50 1.53 16 12 N -0.71 -8.13 3.40 -14.13 -0.05 -8.18 16 13 C 0.70 10.70 8.35 -86.92 -0.73 9.98 16 14 O -0.57 -10.97 14.78 5.28 0.08 -10.89 16 15 N -0.74 -11.12 5.56 -65.22 -0.36 -11.49 16 16 C 0.15 2.85 5.61 -4.04 -0.02 2.82 16 17 C -0.02 -0.47 4.16 -27.88 -0.12 -0.59 16 18 C -0.52 -14.30 9.66 -34.44 -0.33 -14.64 16 19 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 21 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 22 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 26 C 0.07 0.80 6.41 -83.27 -0.53 0.26 16 27 H 0.10 0.93 6.97 -51.93 -0.36 0.57 16 28 H 0.08 0.78 6.27 -51.93 -0.33 0.45 16 29 H 0.07 0.48 6.96 -51.93 -0.36 0.12 16 30 H 0.15 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 33 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.14 1.71 7.30 -52.49 -0.38 1.33 16 35 H 0.41 3.53 5.19 -40.82 -0.21 3.32 16 36 H 0.39 4.75 8.49 -40.82 -0.35 4.40 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 40 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -34.81 341.25 -7.47 -42.28 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.88 Total: 4.72 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -3.02 Total: 4.96 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.01 Total: -52.18 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.04 Total: -20.84 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.81 -7.47 -42.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881263062.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.395 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds