Wall clock time and date at job start Tue Mar 31 2020 14:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35105 * 120.51862 * 2 1 4 4 O 1.21301 * 120.15133 * 1.71365 * 3 2 1 5 5 C 1.50763 * 119.69856 * 181.70100 * 3 2 1 6 6 O 1.43002 * 109.63202 * 328.68527 * 5 3 2 7 7 C 1.35989 * 116.73577 * 46.44000 * 6 5 3 8 8 C 1.38532 * 120.63716 * 147.14793 * 7 6 5 9 9 C 1.38296 * 120.00533 * 180.02562 * 8 7 6 10 10 C 1.38222 * 120.32499 * 359.97438 * 9 8 7 11 11 C 1.38856 * 120.11383 * 0.02562 * 10 9 8 12 12 N 1.40118 * 120.15744 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99736 * 310.66788 * 12 11 10 14 14 O 1.21598 * 119.99797 * 5.02167 * 13 12 11 15 15 N 1.34773 * 120.00320 * 185.02595 * 13 12 11 16 16 C 1.46499 * 119.99913 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.46953 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.47263 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00038 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99906 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99843 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00203 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47167 * 89.99588 * 22 20 18 24 24 H 1.48501 * 109.47013 * 209.99634 * 22 20 18 25 25 H 1.48502 * 109.46991 * 329.99593 * 22 20 18 26 26 C 1.39069 * 119.69298 * 359.96966 * 11 10 9 27 27 H 1.08998 * 109.46962 * 356.09503 * 1 2 3 28 28 H 1.08997 * 109.46893 * 116.09587 * 1 2 3 29 29 H 1.09003 * 109.47465 * 236.09464 * 1 2 3 30 30 H 1.08996 * 109.44703 * 208.63631 * 5 3 2 31 31 H 1.08996 * 109.41626 * 88.71427 * 5 3 2 32 32 H 1.07997 * 119.99574 * 0.02562 * 8 7 6 33 33 H 1.08004 * 119.83738 * 179.97438 * 9 8 7 34 34 H 1.08000 * 119.95013 * 179.97438 * 10 9 8 35 35 H 0.96993 * 120.00564 * 130.66539 * 12 11 10 36 36 H 0.97002 * 119.99798 * 0.02562 * 15 13 12 37 37 H 1.09005 * 109.47530 * 299.99793 * 16 15 13 38 38 H 1.08996 * 109.47476 * 60.00516 * 16 15 13 39 39 H 1.08994 * 109.47158 * 300.00107 * 17 16 15 40 40 H 1.09006 * 109.47237 * 60.00054 * 17 16 15 41 41 H 0.96999 * 119.99698 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1510 1.1639 0.0000 4 8 1.5573 2.2212 0.0314 5 6 3.6580 1.1426 -0.0389 6 8 4.1395 -0.0252 0.6315 7 6 3.5319 -1.2020 0.3229 8 6 4.2472 -2.3883 0.3277 9 6 3.6163 -3.5776 0.0113 10 6 2.2721 -3.5905 -0.3103 11 6 1.5462 -2.4068 -0.3180 12 7 0.1837 -2.4187 -0.6444 13 6 -0.2382 -3.0590 -1.7528 14 8 0.5489 -3.7025 -2.4198 15 7 -1.5323 -2.9859 -2.1220 16 6 -1.9906 -3.6814 -3.3272 17 6 -3.4888 -3.4373 -3.5182 18 6 -3.9602 -4.1522 -4.7583 19 1 -3.2612 -4.7239 -5.3507 20 6 -5.2841 -4.0773 -5.1360 21 7 -5.6956 -4.7016 -6.2180 22 14 -6.4934 -3.0890 -4.1110 23 1 -6.5313 -1.6887 -4.6037 24 1 -7.8463 -3.6907 -4.2250 25 1 -6.0639 -3.1022 -2.6895 26 6 2.1779 -1.2093 -0.0001 27 1 -0.3633 1.0253 0.0700 28 1 -0.3633 -0.4520 -0.9229 29 1 -0.3634 -0.5733 0.8529 30 1 4.0464 2.0319 0.4574 31 1 3.9936 1.1299 -1.0758 32 1 5.2977 -2.3844 0.5786 33 1 4.1767 -4.5009 0.0155 34 1 1.7856 -4.5227 -0.5569 35 1 -0.4560 -1.9663 -0.0726 36 1 -2.1601 -2.4722 -1.5902 37 1 -1.4478 -3.3032 -4.1936 38 1 -1.8069 -4.7506 -3.2217 39 1 -4.0319 -3.8151 -2.6520 40 1 -3.6722 -2.3680 -3.6239 41 1 -6.6269 -4.6486 -6.4839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881263062.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:13 Heat of formation + Delta-G solvation = -64.330905 kcal Electronic energy + Delta-G solvation = -26532.333986 eV Core-core repulsion = 22605.939752 eV Total energy + Delta-G solvation = -3926.394234 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.86148 -41.37546 -39.99240 -38.85803 -36.97449 -36.71351 -35.48226 -34.78859 -32.18429 -31.20418 -30.88036 -29.63339 -27.35553 -26.68042 -24.61240 -23.78600 -22.63634 -22.27257 -20.78122 -20.06919 -19.57396 -18.91148 -18.58416 -18.25080 -17.60870 -16.87454 -16.71884 -16.41038 -16.23428 -16.14007 -15.89398 -15.67958 -15.41865 -15.37742 -15.01622 -14.62316 -14.60584 -14.06656 -13.59374 -13.48277 -13.36289 -13.24177 -13.06770 -12.67957 -12.23935 -12.19514 -12.18396 -11.76942 -11.58014 -11.54997 -11.41085 -11.37830 -10.87715 -10.79076 -10.13303 -9.28074 -8.89910 -8.30051 -6.37286 -0.06632 0.13513 1.13034 1.32523 1.39196 1.41459 1.52257 1.53663 1.97243 2.17721 2.36483 2.65504 2.82226 3.05344 3.11724 3.66927 3.82438 3.89169 4.01573 4.14814 4.18747 4.29166 4.30379 4.38999 4.44162 4.53397 4.56148 4.72124 4.75054 5.01712 5.08428 5.17932 5.33869 5.39020 5.41124 5.44088 5.60057 5.64682 5.70004 5.81779 6.20409 6.22424 6.50475 6.70126 6.89553 7.27188 7.41231 8.86734 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.019409 B = 0.002920 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.305466 B = 9587.941820 C =10655.457014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.553 5.553 3 C 0.479 3.521 4 O -0.546 6.546 5 C 0.054 3.946 6 O -0.300 6.300 7 C 0.080 3.920 8 C -0.108 4.108 9 C -0.084 4.084 10 C -0.115 4.115 11 C 0.151 3.849 12 N -0.686 5.686 13 C 0.700 3.300 14 O -0.614 6.614 15 N -0.725 5.725 16 C 0.165 3.835 17 C -0.013 4.013 18 C -0.538 4.538 19 H 0.030 0.970 20 C 0.004 3.996 21 N -0.951 5.951 22 Si 0.958 3.042 23 H -0.267 1.267 24 H -0.288 1.288 25 H -0.234 1.234 26 C 0.063 3.937 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.171 0.829 31 H 0.117 0.883 32 H 0.170 0.830 33 H 0.167 0.833 34 H 0.125 0.875 35 H 0.420 0.580 36 H 0.411 0.589 37 H 0.043 0.957 38 H 0.047 0.953 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.776 9.947 20.609 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.278 5.278 3 C 0.269 3.731 4 O -0.423 6.423 5 C -0.023 4.023 6 O -0.214 6.214 7 C 0.033 3.967 8 C -0.127 4.127 9 C -0.103 4.103 10 C -0.136 4.136 11 C 0.055 3.945 12 N -0.344 5.344 13 C 0.400 3.600 14 O -0.493 6.493 15 N -0.380 5.380 16 C 0.041 3.959 17 C -0.050 4.050 18 C -0.576 4.576 19 H 0.048 0.952 20 C -0.193 4.193 21 N -0.591 5.591 22 Si 0.780 3.220 23 H -0.192 1.192 24 H -0.214 1.214 25 H -0.157 1.157 26 C -0.033 4.033 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.189 0.811 31 H 0.135 0.865 32 H 0.187 0.813 33 H 0.185 0.815 34 H 0.143 0.857 35 H 0.265 0.735 36 H 0.247 0.753 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 20.028 10.010 20.012 30.030 hybrid contribution -1.866 0.488 -0.156 1.935 sum 18.162 10.498 19.857 28.885 Atomic orbital electron populations 1.22397 0.77258 1.05552 1.03266 1.45565 1.08093 1.04325 1.69839 1.22197 0.92722 0.82875 0.75271 1.90754 1.71647 1.30338 1.49585 1.23417 0.86873 0.89492 1.02549 1.86243 1.58319 1.13194 1.63692 1.18622 0.88022 0.87920 1.02090 1.20881 1.01567 0.88748 1.01487 1.21230 0.93023 0.99105 0.96964 1.21211 0.95739 0.96577 1.00033 1.16890 0.83976 0.91676 1.01964 1.43148 1.06824 1.58526 1.25866 1.16072 0.82898 0.79927 0.81076 1.90928 1.54850 1.46911 1.56615 1.45126 1.07697 1.55512 1.29647 1.20935 0.95210 0.95304 0.84473 1.19654 0.91738 0.97384 0.96259 1.21246 0.94961 1.31721 1.09706 0.95157 1.26070 1.00589 0.96455 0.96192 1.70078 1.17338 1.45159 1.26550 0.85557 0.77133 0.78525 0.80758 1.19225 1.21423 1.15712 1.18103 0.91439 0.84915 1.08880 0.88787 0.90449 0.88626 0.81127 0.86500 0.81258 0.81534 0.85670 0.73535 0.75263 0.93891 0.93409 0.94250 0.94684 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.96 8.70 127.77 1.11 2.07 16 2 N -0.55 -11.41 3.12 -653.07 -2.04 -13.45 16 3 C 0.48 10.12 7.67 87.63 0.67 10.79 16 4 O -0.55 -14.59 16.51 -3.09 -0.05 -14.64 16 5 C 0.05 0.74 7.17 71.26 0.51 1.25 16 6 O -0.30 -4.79 10.45 -93.43 -0.98 -5.77 16 7 C 0.08 1.43 6.44 22.57 0.15 1.58 16 8 C -0.11 -1.49 10.00 22.35 0.22 -1.27 16 9 C -0.08 -1.26 10.03 22.28 0.22 -1.03 16 10 C -0.11 -2.46 8.71 22.41 0.20 -2.27 16 11 C 0.15 3.39 5.96 38.16 0.23 3.62 16 12 N -0.69 -15.06 3.40 -316.88 -1.08 -16.14 16 13 C 0.70 21.12 8.35 179.05 1.49 22.62 16 14 O -0.61 -23.80 14.78 -4.02 -0.06 -23.86 16 15 N -0.72 -21.10 5.56 -478.52 -2.66 -23.76 16 16 C 0.16 6.40 5.61 86.38 0.48 6.89 16 17 C -0.01 -0.53 4.16 29.85 0.12 -0.41 16 18 C -0.54 -30.03 9.66 25.60 0.25 -29.78 16 19 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 20 C 0.00 0.23 5.47 84.65 0.46 0.69 16 21 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 22 Si 0.96 41.50 27.47 68.60 1.88 43.39 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 25 H -0.23 -8.87 6.54 99.48 0.65 -8.22 16 26 C 0.06 1.30 6.41 38.20 0.24 1.54 16 27 H 0.09 1.70 6.97 -2.39 -0.02 1.69 16 28 H 0.08 1.36 6.27 -2.39 -0.01 1.35 16 29 H 0.10 1.10 6.96 -2.39 -0.02 1.08 16 30 H 0.17 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 33 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.13 3.07 7.30 -2.91 -0.02 3.05 16 35 H 0.42 6.55 5.19 -92.71 -0.48 6.07 16 36 H 0.41 8.91 8.49 -92.71 -0.79 8.12 16 37 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.04 1.56 7.20 -2.39 -0.02 1.55 16 40 H 0.03 1.39 7.57 -2.38 -0.02 1.37 16 41 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -78.41 341.25 1.46 -76.95 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -0.23 Total: 19.47 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 6.37 Total: 16.28 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -5.48 Total: -111.82 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.09 Total: -44.27 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.88 Total: 43.39 kcal Total: -78.41 1.46 -76.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881263062.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.621 kcal (2) G-P(sol) polarization free energy of solvation -78.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds