Wall clock time and date at job start Tue Mar 31 2020 14:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46953 * 2 1 4 4 C 1.50700 * 109.47536 * 239.99927 * 2 1 3 5 5 H 1.08006 * 119.99436 * 240.00322 * 4 2 1 6 6 C 1.37871 * 120.00078 * 59.99554 * 4 2 1 7 7 N 1.31512 * 120.00179 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00039 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47079 * 59.99979 * 8 6 4 10 10 H 1.48495 * 109.47302 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46810 * 300.00446 * 8 6 4 12 12 N 1.46498 * 109.47046 * 119.99268 * 2 1 3 13 13 C 1.34776 * 120.00506 * 275.28030 * 12 2 1 14 14 O 1.21599 * 119.99490 * 359.72639 * 13 12 2 15 15 N 1.34773 * 120.00439 * 179.72128 * 13 12 2 16 16 C 1.40111 * 120.00194 * 176.45888 * 15 13 12 17 17 C 1.38895 * 120.15575 * 44.88471 * 16 15 13 18 18 C 1.38186 * 120.12202 * 179.81475 * 17 16 15 19 19 C 1.38348 * 120.31302 * 0.43442 * 18 17 16 20 20 C 1.38474 * 120.01177 * 359.80846 * 19 18 17 21 21 C 1.39032 * 120.15665 * 225.16508 * 16 15 13 22 22 N 1.40385 * 120.74443 * 359.97438 * 21 16 15 23 23 C 1.46497 * 120.52042 * 15.40814 * 22 21 16 24 24 C 1.35099 * 118.95538 * 195.42637 * 22 21 16 25 25 O 1.21308 * 120.14263 * 181.66621 * 24 22 21 26 26 C 1.50750 * 119.71052 * 1.68879 * 24 22 21 27 27 O 1.35995 * 120.64081 * 180.02562 * 20 19 18 28 28 H 1.09005 * 109.46716 * 60.00799 * 1 2 3 29 29 H 1.08999 * 109.46604 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47374 * 300.00124 * 1 2 3 31 31 H 0.97005 * 120.00139 * 179.97438 * 7 6 4 32 32 H 0.97004 * 119.99993 * 95.00555 * 12 2 1 33 33 H 0.97005 * 119.99909 * 356.46470 * 15 13 12 34 34 H 1.07997 * 119.93913 * 0.02562 * 17 16 15 35 35 H 1.07992 * 119.84223 * 180.19519 * 18 17 16 36 36 H 1.08006 * 119.99392 * 179.78424 * 19 18 17 37 37 H 1.09000 * 109.47583 * 33.75480 * 23 22 21 38 38 H 1.09001 * 109.46990 * 153.75502 * 23 22 21 39 39 H 1.09001 * 109.47154 * 273.74891 * 23 22 21 40 40 H 1.09000 * 109.44468 * 88.74395 * 26 24 22 41 41 H 1.09008 * 109.44628 * 208.64305 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3216 -1.1205 -4.0079 9 1 1.8262 -2.5204 -4.0076 10 1 1.8272 -0.4202 -5.2204 11 1 3.8066 -1.1210 -4.0079 12 7 2.0183 -0.6905 1.1962 13 6 2.1417 -0.0194 2.3586 14 8 1.8524 1.1604 2.4131 15 7 2.5856 -0.6560 3.4604 16 6 2.7845 0.0577 4.6496 17 6 1.8298 0.9676 5.0853 18 6 2.0249 1.6684 6.2602 19 6 3.1746 1.4760 7.0053 20 6 4.1349 0.5748 6.5770 21 6 3.9412 -0.1372 5.3960 22 7 4.9231 -1.0473 4.9736 23 6 4.9241 -1.5561 3.5999 24 6 5.8667 -1.4467 5.8540 25 8 6.7430 -2.2089 5.5038 26 6 5.8257 -0.9414 7.2737 27 8 5.2695 0.3753 7.2996 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.7096 1.1616 -3.4845 32 1 2.2491 -1.6316 1.1528 33 1 2.7675 -1.6084 3.4302 34 1 0.9317 1.1252 4.5065 35 1 1.2782 2.3724 6.5963 36 1 3.3235 2.0290 7.9210 37 1 4.5647 -0.7798 2.9245 38 1 5.9379 -1.8414 3.3189 39 1 4.2706 -2.4260 3.5341 40 1 5.2095 -1.6070 7.8782 41 1 6.8372 -0.9161 7.6793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881264225.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:13 Heat of formation + Delta-G solvation = -40.539241 kcal Electronic energy + Delta-G solvation = -27102.822412 eV Core-core repulsion = 23177.459862 eV Total energy + Delta-G solvation = -3925.362550 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86010 -39.96948 -38.94359 -37.72585 -35.94187 -35.08070 -34.05203 -32.46549 -30.40885 -30.00036 -29.23651 -28.07616 -26.24899 -25.31028 -23.66136 -22.95785 -21.36403 -20.17683 -19.69961 -19.06029 -18.37465 -17.63455 -17.16370 -16.68113 -15.95135 -15.63847 -15.42424 -15.34811 -15.08801 -14.87629 -14.54284 -14.37071 -14.04464 -13.73959 -13.33868 -13.10971 -12.81975 -12.53659 -12.46350 -12.11563 -11.81546 -11.70215 -11.58123 -11.14461 -11.01942 -10.82964 -10.52442 -10.39008 -10.28780 -10.25073 -9.86370 -9.54884 -9.12642 -8.62399 -8.28233 -8.05684 -7.82524 -6.17975 -4.27653 0.90827 1.13940 2.08980 2.28770 2.94837 3.05243 3.22263 3.28128 3.29471 3.48866 3.70053 3.80005 4.27326 4.58238 4.62510 4.76534 4.77372 4.84051 5.07092 5.10495 5.14846 5.18206 5.26767 5.47924 5.59715 5.64827 6.05388 6.11161 6.30775 6.39590 6.63111 6.71216 6.77974 6.89436 6.98751 7.11052 7.15703 7.35244 7.48109 7.55171 7.73764 7.89662 8.08587 8.62451 8.75381 9.11270 9.40438 10.87989 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.003408 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.773039 B = 8214.389249 C = 9427.387333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.717 5.717 13 C 0.691 3.309 14 O -0.577 6.577 15 N -0.705 5.705 16 C 0.181 3.819 17 C -0.101 4.101 18 C -0.092 4.092 19 C -0.125 4.125 20 C 0.089 3.911 21 C 0.063 3.937 22 N -0.546 5.546 23 C 0.069 3.931 24 C 0.485 3.515 25 O -0.515 6.515 26 C 0.053 3.947 27 O -0.302 6.302 28 H 0.091 0.909 29 H 0.026 0.974 30 H 0.015 0.985 31 H 0.266 0.734 32 H 0.386 0.614 33 H 0.403 0.597 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -3.652 19.761 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.368 5.368 13 C 0.392 3.608 14 O -0.454 6.454 15 N -0.359 5.359 16 C 0.083 3.917 17 C -0.122 4.122 18 C -0.112 4.112 19 C -0.145 4.145 20 C 0.043 3.957 21 C -0.034 4.034 22 N -0.272 5.272 23 C -0.072 4.072 24 C 0.273 3.727 25 O -0.390 6.390 26 C -0.025 4.025 27 O -0.216 6.216 28 H 0.110 0.890 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.218 0.782 33 H 0.242 0.758 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.210 -2.789 19.379 20.026 hybrid contribution 0.467 -1.623 -1.173 2.057 sum 4.677 -4.412 18.206 19.308 Atomic orbital electron populations 1.22108 0.98458 0.99129 1.00994 1.18707 0.90885 0.93763 0.78709 0.93193 1.21147 1.32743 1.13364 0.90218 0.92111 1.24866 0.94748 0.94935 0.99028 1.69886 1.35644 1.22305 1.24110 0.86492 0.79188 0.79564 0.81763 1.20151 1.21082 1.20161 1.45897 1.68555 1.13359 1.09035 1.16170 0.78812 0.85538 0.80304 1.90921 1.56057 1.14189 1.84253 1.43385 1.71944 1.11762 1.08798 1.16833 0.91148 0.97009 0.86715 1.21175 0.99042 0.96355 0.95657 1.20903 0.96954 0.99268 0.94064 1.20470 0.91920 1.00488 1.01595 1.18317 0.88269 0.99013 0.90149 1.17967 0.89894 0.98034 0.97478 1.45465 1.26932 1.42231 1.12524 1.22259 1.04257 0.99931 0.80780 1.21573 0.81127 0.81277 0.88736 1.90770 1.34512 1.34873 1.78886 1.23148 1.02684 0.83842 0.92794 1.86222 1.38257 1.29339 1.67779 0.89042 0.95492 0.96563 0.92424 0.78215 0.75837 0.83898 0.84487 0.84386 0.88724 0.89391 0.91839 0.88442 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.26 37.16 0.34 -3.20 16 2 C 0.28 6.84 2.56 -69.08 -0.18 6.67 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.54 -13.70 8.73 -34.44 -0.30 -14.00 16 5 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.26 11.32 55.43 0.63 -23.63 16 8 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.72 -13.92 5.07 -59.81 -0.30 -14.22 16 13 C 0.69 12.99 7.97 -86.92 -0.69 12.29 16 14 O -0.58 -13.09 14.17 5.28 0.07 -13.02 16 15 N -0.70 -10.05 3.05 -14.13 -0.04 -10.09 16 16 C 0.18 2.54 5.98 -83.53 -0.50 2.04 16 17 C -0.10 -1.37 8.68 -39.36 -0.34 -1.72 16 18 C -0.09 -0.98 10.03 -39.56 -0.40 -1.38 16 19 C -0.13 -1.28 10.00 -39.45 -0.39 -1.67 16 20 C 0.09 1.06 6.44 -39.12 -0.25 0.80 16 21 C 0.06 0.82 6.40 -83.27 -0.53 0.29 16 22 N -0.55 -6.99 3.12 -120.41 -0.38 -7.36 16 23 C 0.07 0.83 8.68 59.85 0.52 1.35 16 24 C 0.48 6.02 7.67 -10.82 -0.08 5.94 16 25 O -0.52 -7.71 16.69 5.53 0.09 -7.61 16 26 C 0.05 0.47 7.17 36.03 0.26 0.73 16 27 O -0.30 -3.27 10.45 -19.73 -0.21 -3.48 16 28 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.39 6.33 8.56 -40.82 -0.35 5.98 16 33 H 0.40 4.65 6.07 -40.82 -0.25 4.40 16 34 H 0.14 2.15 7.02 -52.49 -0.37 1.78 16 35 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.09 1.29 6.06 -51.93 -0.31 0.98 16 38 H 0.09 1.09 7.34 -51.93 -0.38 0.71 16 39 H 0.06 0.62 6.77 -51.93 -0.35 0.27 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.14 0.94 8.14 -51.92 -0.42 0.52 16 LS Contribution 339.79 15.07 5.12 5.12 Total: -1.00 -32.14 339.79 -7.48 -39.62 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -4.80 Total: 9.66 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: -2.64 Total: 9.84 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.10 Total: -55.31 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.04 Total: -24.11 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.14 -7.48 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881264225.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.921 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds