Wall clock time and date at job start Tue Mar 31 2020 14:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37014 * 125.65583 * 2 1 4 4 C 1.35140 * 107.87890 * 180.13899 * 3 2 1 5 5 C 1.46656 * 126.37768 * 179.83983 * 4 3 2 6 6 O 1.21707 * 119.99928 * 188.04098 * 5 4 3 7 7 N 1.34777 * 120.00265 * 8.04276 * 5 4 3 8 8 C 1.46504 * 119.99458 * 6.41507 * 7 5 4 9 9 C 1.50697 * 109.47254 * 271.32493 * 8 7 5 10 10 H 1.08004 * 120.00206 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99771 * 180.02562 * 9 8 7 12 12 N 1.31506 * 120.00081 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99848 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47109 * 59.99865 * 13 11 9 15 15 H 1.48497 * 109.47344 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47219 * 300.00170 * 13 11 9 17 17 C 1.46492 * 120.00358 * 186.41875 * 7 5 4 18 18 C 1.50696 * 109.47406 * 270.00063 * 17 7 5 19 19 C 1.34516 * 125.79339 * 89.99662 * 18 17 7 20 20 C 1.41375 * 106.84232 * 179.79511 * 19 18 17 21 21 C 1.34515 * 106.84409 * 0.37249 * 20 19 18 22 22 O 1.34307 * 108.41745 * 359.62505 * 21 20 19 23 23 N 1.39843 * 107.24231 * 359.58499 * 4 3 2 24 24 C 1.46503 * 126.17723 * 180.25947 * 23 4 3 25 25 C 1.34624 * 125.65042 * 179.66368 * 2 1 3 26 26 O 1.21733 * 125.72516 * 0.02562 * 25 2 1 27 27 H 1.08994 * 109.47065 * 180.30819 * 1 2 3 28 28 H 1.09001 * 109.47075 * 300.30629 * 1 2 3 29 29 H 1.09000 * 109.47042 * 60.30635 * 1 2 3 30 30 H 1.08005 * 126.05876 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.47415 * 31.33112 * 8 7 5 32 32 H 1.09003 * 109.46735 * 151.32774 * 8 7 5 33 33 H 0.97003 * 120.00362 * 179.97438 * 12 11 9 34 34 H 1.09005 * 109.47208 * 149.99434 * 17 7 5 35 35 H 1.09003 * 109.46976 * 29.99761 * 17 7 5 36 36 H 1.07998 * 126.57360 * 359.97438 * 19 18 17 37 37 H 1.07997 * 126.58291 * 180.23249 * 20 19 18 38 38 H 1.07993 * 125.79197 * 179.88841 * 21 20 19 39 39 H 1.09000 * 109.47112 * 89.99945 * 24 23 4 40 40 H 1.08997 * 109.46786 * 209.99537 * 24 23 4 41 41 H 1.08998 * 109.47530 * 330.00162 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2637 1.1133 0.0000 4 6 3.5506 0.7007 -0.0031 5 6 4.7393 1.5595 -0.0075 6 8 5.8434 1.0697 -0.1575 7 7 4.6093 2.8912 0.1545 8 6 3.3002 3.4656 0.4748 9 6 2.5611 3.7741 -0.8017 10 1 3.0203 3.5630 -1.7562 11 6 1.2985 4.3260 -0.7511 12 7 0.7396 4.5835 0.4111 13 14 0.3820 4.7077 -2.3334 14 1 0.1959 3.4568 -3.1118 15 1 -0.9449 5.2901 -2.0087 16 1 1.1661 5.6791 -3.1376 17 6 5.7769 3.7641 0.0102 18 6 6.4544 3.9219 1.3470 19 6 7.4318 3.1348 1.8314 20 6 7.7739 3.6435 3.1053 21 6 6.9794 4.7062 3.3268 22 8 6.1845 4.8720 2.2571 23 7 3.5375 -0.6977 0.0046 24 6 4.7120 -1.5734 0.0098 25 6 2.2496 -1.0939 0.0064 26 8 1.8609 -2.2475 0.0128 27 1 -0.3633 -1.0276 0.0055 28 1 -0.3633 0.5186 0.8872 29 1 -0.3633 0.5091 -0.8927 30 1 1.9248 2.1388 -0.0004 31 1 2.7248 2.7521 1.0645 32 1 3.4364 4.3835 1.0467 33 1 -0.1485 4.9721 0.4467 34 1 5.4575 4.7410 -0.3529 35 1 6.4750 3.3226 -0.7011 36 1 7.8727 2.2801 1.3400 37 1 8.5268 3.2526 3.7735 38 1 6.9833 5.3239 4.2126 39 1 5.0029 -1.7849 1.0388 40 1 4.4714 -2.5069 -0.4988 41 1 5.5355 -1.0800 -0.5064 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900454555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:20 Heat of formation + Delta-G solvation = 28.170406 kcal Electronic energy + Delta-G solvation = -27813.490957 eV Core-core repulsion = 23891.107881 eV Total energy + Delta-G solvation = -3922.383076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.22507 -41.90305 -38.99482 -36.30829 -35.69051 -34.63939 -33.21239 -32.60891 -31.08193 -29.65139 -27.89343 -27.39634 -25.66105 -25.27057 -23.40767 -22.09572 -21.36395 -20.56805 -20.00812 -19.06802 -17.27849 -16.89094 -16.56278 -16.41150 -16.12305 -15.99378 -15.19546 -14.85886 -14.66405 -14.42986 -14.32708 -13.82783 -13.64093 -13.55688 -13.07235 -12.61193 -12.56403 -12.51927 -12.46863 -12.37487 -12.17426 -11.86500 -11.40623 -11.23072 -11.13717 -10.96634 -10.58273 -10.43764 -10.07729 -9.95921 -9.62181 -9.43616 -9.30657 -8.86237 -8.25826 -8.04619 -7.19967 -6.48137 -4.58429 1.96916 2.06758 2.68174 2.88118 3.08664 3.15455 3.18403 3.29849 3.31563 3.54754 3.88900 4.08311 4.27604 4.82886 5.02543 5.11547 5.25987 5.32392 5.43435 5.51157 5.62970 5.72171 5.73974 5.82863 5.87091 5.94129 6.02236 6.08131 6.25768 6.27185 6.38714 6.43272 6.45255 6.80604 6.87418 6.96976 7.22107 7.34471 7.47152 7.48086 7.70032 7.76859 8.04504 8.50830 8.67040 8.80495 9.08319 10.55067 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.009392 B = 0.006412 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.500765 B = 4365.572727 C = 6587.969613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.529 5.529 3 C 0.072 3.928 4 C -0.073 4.073 5 C 0.600 3.400 6 O -0.567 6.567 7 N -0.583 5.583 8 C 0.215 3.785 9 C -0.551 4.551 10 H 0.071 0.929 11 C 0.068 3.932 12 N -0.879 5.879 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.272 1.272 17 C 0.204 3.796 18 C -0.021 4.021 19 C -0.194 4.194 20 C -0.221 4.221 21 C -0.047 4.047 22 O -0.170 6.170 23 N -0.515 5.515 24 C 0.105 3.895 25 C 0.641 3.359 26 O -0.588 6.588 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.259 0.741 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.273 0.727 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.197 0.803 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.388 -0.523 2.290 5.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.245 5.245 3 C -0.055 4.055 4 C -0.179 4.179 5 C 0.390 3.610 6 O -0.449 6.449 7 N -0.313 5.313 8 C 0.095 3.905 9 C -0.589 4.589 10 H 0.089 0.911 11 C -0.138 4.138 12 N -0.515 5.515 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.197 1.197 17 C 0.080 3.920 18 C -0.072 4.072 19 C -0.214 4.214 20 C -0.240 4.240 21 C -0.115 4.115 22 O -0.065 6.065 23 N -0.236 5.236 24 C -0.037 4.037 25 C 0.344 3.656 26 O -0.468 6.468 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.273 0.727 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.214 0.786 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.259 -1.334 2.266 5.879 hybrid contribution -0.415 0.192 -0.511 0.686 sum 4.844 -1.142 1.755 5.277 Atomic orbital electron populations 1.21781 0.75253 1.04034 1.03463 1.45173 1.07946 1.06684 1.64669 1.25562 0.88084 0.95890 0.95974 1.19454 0.94476 0.82921 1.21005 1.16658 0.86314 0.81735 0.76247 1.90676 1.26723 1.74384 1.53152 1.47887 1.10602 1.04715 1.68094 1.20100 0.77930 0.95773 0.96675 1.21505 1.01111 1.42984 0.93325 0.91070 1.25022 0.97401 0.94454 0.96901 1.69923 1.16331 1.41259 1.23956 0.86547 0.78933 0.79318 0.82940 1.19694 1.20823 1.19680 1.19700 0.87675 0.96349 0.88258 1.23167 0.99279 0.90795 0.93986 1.21677 1.00829 1.02433 0.96431 1.21806 1.04148 0.99322 0.98708 1.23961 0.94480 1.01305 0.91799 1.84073 1.51816 1.46463 1.24130 1.44975 1.06394 1.05256 1.66948 1.21728 0.86031 0.93356 1.02539 1.16235 0.81098 0.84986 0.83272 1.90947 1.77028 1.16716 1.62157 0.89469 0.90355 0.90544 0.72666 0.93100 0.93523 0.91745 0.88184 0.87535 0.83372 0.83989 0.78602 0.92286 0.90810 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.44 11.16 59.85 0.67 2.11 16 2 N -0.53 -10.08 3.12 -128.79 -0.40 -10.48 16 3 C 0.07 1.45 8.82 -16.34 -0.14 1.30 16 4 C -0.07 -1.49 6.71 -81.91 -0.55 -2.04 16 5 C 0.60 12.19 7.61 -12.86 -0.10 12.09 16 6 O -0.57 -11.68 14.46 5.18 0.07 -11.61 16 7 N -0.58 -11.35 2.44 -177.99 -0.43 -11.78 16 8 C 0.21 4.55 4.65 -5.19 -0.02 4.52 16 9 C -0.55 -12.23 7.03 -34.44 -0.24 -12.47 16 10 H 0.07 1.61 7.81 -52.48 -0.41 1.20 16 11 C 0.07 1.53 4.93 -17.82 -0.09 1.45 16 12 N -0.88 -20.74 13.29 55.43 0.74 -20.00 16 13 Si 0.90 18.05 29.54 -169.99 -5.02 13.03 16 14 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 15 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 16 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 17 C 0.20 3.45 5.88 -5.20 -0.03 3.42 16 18 C -0.02 -0.35 6.90 -35.63 -0.25 -0.60 16 19 C -0.19 -3.11 10.81 -39.71 -0.43 -3.54 16 20 C -0.22 -3.08 10.91 -39.71 -0.43 -3.51 16 21 C -0.05 -0.64 12.09 29.42 0.36 -0.29 16 22 O -0.17 -2.85 10.65 5.69 0.06 -2.79 16 23 N -0.51 -10.21 3.21 -124.83 -0.40 -10.61 16 24 C 0.11 1.74 10.67 59.85 0.64 2.38 16 25 C 0.64 13.32 8.49 -87.08 -0.74 12.58 16 26 O -0.59 -13.25 17.35 5.16 0.09 -13.16 16 27 H 0.09 1.23 7.68 -51.93 -0.40 0.83 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.26 5.45 2.66 -52.48 -0.14 5.31 16 31 H 0.05 1.13 5.01 -51.93 -0.26 0.87 16 32 H 0.05 1.06 8.06 -51.93 -0.42 0.64 16 33 H 0.27 6.18 8.31 -40.82 -0.34 5.84 16 34 H 0.10 1.61 8.07 -51.93 -0.42 1.19 16 35 H 0.11 1.69 7.52 -51.93 -0.39 1.30 16 36 H 0.15 2.37 8.06 -52.49 -0.42 1.94 16 37 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.20 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 41 H 0.10 1.63 6.31 -51.93 -0.33 1.31 16 LS Contribution 350.16 15.07 5.28 5.28 Total: -1.00 -28.53 350.16 -6.24 -34.77 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -4.86 Total: 9.96 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: -1.36 Total: 17.40 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.50 Total: -52.88 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: 0.23 Total: -27.56 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.02 Total: 13.03 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.53 -6.24 -34.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900454555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.940 kcal (2) G-P(sol) polarization free energy of solvation -28.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds