Wall clock time and date at job start Tue Mar 31 2020 14:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37014 * 125.65583 * 2 1 4 4 C 1.35140 * 107.87890 * 180.13899 * 3 2 1 5 5 C 1.46656 * 126.37768 * 179.83983 * 4 3 2 6 6 O 1.21707 * 119.99928 * 188.04098 * 5 4 3 7 7 N 1.34777 * 120.00265 * 8.04276 * 5 4 3 8 8 C 1.46504 * 119.99458 * 6.41507 * 7 5 4 9 9 C 1.50697 * 109.47254 * 271.32493 * 8 7 5 10 10 H 1.08004 * 120.00206 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99771 * 180.02562 * 9 8 7 12 12 N 1.31506 * 120.00081 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99848 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47109 * 59.99865 * 13 11 9 15 15 H 1.48497 * 109.47344 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47219 * 300.00170 * 13 11 9 17 17 C 1.46492 * 120.00358 * 186.41875 * 7 5 4 18 18 C 1.50696 * 109.47406 * 270.00063 * 17 7 5 19 19 C 1.34516 * 125.79339 * 89.99662 * 18 17 7 20 20 C 1.41375 * 106.84232 * 179.79511 * 19 18 17 21 21 C 1.34515 * 106.84409 * 0.37249 * 20 19 18 22 22 O 1.34307 * 108.41745 * 359.62505 * 21 20 19 23 23 N 1.39843 * 107.24231 * 359.58499 * 4 3 2 24 24 C 1.46503 * 126.17723 * 180.25947 * 23 4 3 25 25 C 1.34624 * 125.65042 * 179.66368 * 2 1 3 26 26 O 1.21733 * 125.72516 * 0.02562 * 25 2 1 27 27 H 1.08994 * 109.47065 * 180.30819 * 1 2 3 28 28 H 1.09001 * 109.47075 * 300.30629 * 1 2 3 29 29 H 1.09000 * 109.47042 * 60.30635 * 1 2 3 30 30 H 1.08005 * 126.05876 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.47415 * 31.33112 * 8 7 5 32 32 H 1.09003 * 109.46735 * 151.32774 * 8 7 5 33 33 H 0.97003 * 120.00362 * 179.97438 * 12 11 9 34 34 H 1.09005 * 109.47208 * 149.99434 * 17 7 5 35 35 H 1.09003 * 109.46976 * 29.99761 * 17 7 5 36 36 H 1.07998 * 126.57360 * 359.97438 * 19 18 17 37 37 H 1.07997 * 126.58291 * 180.23249 * 20 19 18 38 38 H 1.07993 * 125.79197 * 179.88841 * 21 20 19 39 39 H 1.09000 * 109.47112 * 89.99945 * 24 23 4 40 40 H 1.08997 * 109.46786 * 209.99537 * 24 23 4 41 41 H 1.08998 * 109.47530 * 330.00162 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2637 1.1133 0.0000 4 6 3.5506 0.7007 -0.0031 5 6 4.7393 1.5595 -0.0075 6 8 5.8434 1.0697 -0.1575 7 7 4.6093 2.8912 0.1545 8 6 3.3002 3.4656 0.4748 9 6 2.5611 3.7741 -0.8017 10 1 3.0203 3.5630 -1.7562 11 6 1.2985 4.3260 -0.7511 12 7 0.7396 4.5835 0.4111 13 14 0.3820 4.7077 -2.3334 14 1 0.1959 3.4568 -3.1118 15 1 -0.9449 5.2901 -2.0087 16 1 1.1661 5.6791 -3.1376 17 6 5.7769 3.7641 0.0102 18 6 6.4544 3.9219 1.3470 19 6 7.4318 3.1348 1.8314 20 6 7.7739 3.6435 3.1053 21 6 6.9794 4.7062 3.3268 22 8 6.1845 4.8720 2.2571 23 7 3.5375 -0.6977 0.0046 24 6 4.7120 -1.5734 0.0098 25 6 2.2496 -1.0939 0.0064 26 8 1.8609 -2.2475 0.0128 27 1 -0.3633 -1.0276 0.0055 28 1 -0.3633 0.5186 0.8872 29 1 -0.3633 0.5091 -0.8927 30 1 1.9248 2.1388 -0.0004 31 1 2.7248 2.7521 1.0645 32 1 3.4364 4.3835 1.0467 33 1 -0.1485 4.9721 0.4467 34 1 5.4575 4.7410 -0.3529 35 1 6.4750 3.3226 -0.7011 36 1 7.8727 2.2801 1.3400 37 1 8.5268 3.2526 3.7735 38 1 6.9833 5.3239 4.2126 39 1 5.0029 -1.7849 1.0388 40 1 4.4714 -2.5069 -0.4988 41 1 5.5355 -1.0800 -0.5064 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900454555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:19 Heat of formation + Delta-G solvation = 13.001481 kcal Electronic energy + Delta-G solvation = -27814.148731 eV Core-core repulsion = 23891.107881 eV Total energy + Delta-G solvation = -3923.040850 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.50908 -43.36985 -40.56674 -37.94168 -37.27416 -36.13405 -34.84963 -33.85499 -32.49389 -31.00952 -29.43685 -28.93555 -27.05202 -26.62486 -25.10667 -23.62793 -22.54213 -21.99890 -21.37686 -20.55048 -18.79140 -18.38884 -18.09569 -17.92026 -17.68682 -17.38939 -16.58756 -16.47907 -16.10403 -15.93141 -15.82143 -15.21421 -15.15000 -14.92291 -14.60353 -14.25467 -13.98443 -13.85735 -13.66607 -13.49969 -13.42148 -13.21858 -12.91412 -12.81539 -12.67419 -12.50845 -12.23187 -12.07231 -11.77231 -11.60618 -10.97808 -10.84377 -10.77058 -10.60240 -9.72716 -9.36592 -8.78599 -8.22607 -6.37698 0.46756 0.76221 1.24643 1.48369 1.53210 1.57874 1.69487 1.71560 2.05017 2.11782 2.34088 2.44534 2.75863 3.07473 3.65040 3.85228 3.92450 4.15809 4.20765 4.22811 4.37731 4.43061 4.43938 4.48015 4.61069 4.68293 4.69297 4.74897 4.79573 4.95979 4.98603 5.09557 5.18213 5.25736 5.38720 5.59174 5.67053 5.72613 5.80327 5.96135 6.19920 6.27783 6.44254 6.76139 7.08210 7.21053 7.32628 8.80392 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.009392 B = 0.006412 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.500765 B = 4365.572727 C = 6587.969613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.526 5.526 3 C 0.072 3.928 4 C -0.084 4.084 5 C 0.597 3.403 6 O -0.573 6.573 7 N -0.582 5.582 8 C 0.231 3.769 9 C -0.551 4.551 10 H 0.065 0.935 11 C 0.040 3.960 12 N -0.901 5.901 13 Si 0.945 3.055 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.275 1.275 17 C 0.203 3.797 18 C -0.046 4.046 19 C -0.198 4.198 20 C -0.229 4.229 21 C -0.040 4.040 22 O -0.191 6.191 23 N -0.516 5.516 24 C 0.102 3.898 25 C 0.631 3.369 26 O -0.610 6.610 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.251 0.749 31 H 0.042 0.958 32 H 0.028 0.972 33 H 0.274 0.726 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.145 0.855 37 H 0.170 0.830 38 H 0.238 0.762 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.634 -0.257 2.627 6.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.241 5.241 3 C -0.056 4.056 4 C -0.190 4.190 5 C 0.387 3.613 6 O -0.456 6.456 7 N -0.311 5.311 8 C 0.111 3.889 9 C -0.589 4.589 10 H 0.083 0.917 11 C -0.164 4.164 12 N -0.538 5.538 13 Si 0.770 3.230 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.200 1.200 17 C 0.080 3.920 18 C -0.097 4.097 19 C -0.219 4.219 20 C -0.247 4.247 21 C -0.107 4.107 22 O -0.087 6.087 23 N -0.236 5.236 24 C -0.038 4.038 25 C 0.334 3.666 26 O -0.493 6.493 27 H 0.115 0.885 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.266 0.734 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.163 0.837 37 H 0.188 0.812 38 H 0.254 0.746 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.517 -1.059 2.599 6.190 hybrid contribution -0.430 0.138 -0.549 0.711 sum 5.088 -0.921 2.050 5.562 Atomic orbital electron populations 1.22091 0.73115 1.05135 1.04901 1.45397 1.09276 1.05805 1.63591 1.25358 0.88320 0.95789 0.96159 1.19596 0.94743 0.83367 1.21304 1.16702 0.86270 0.81942 0.76353 1.90662 1.26844 1.74463 1.53630 1.47881 1.10795 1.04754 1.67713 1.19784 0.78559 0.94610 0.95983 1.21549 1.01282 1.42851 0.93267 0.91655 1.25497 0.97862 0.94262 0.98777 1.69988 1.16659 1.41905 1.25261 0.85789 0.77924 0.78962 0.80289 1.19436 1.20638 1.20028 1.19792 0.87007 0.96097 0.89090 1.23051 1.00375 0.91908 0.94365 1.21839 1.00498 1.02056 0.97458 1.22147 1.04966 0.99410 0.98224 1.24841 0.92898 1.01306 0.91695 1.84058 1.52859 1.46727 1.25030 1.45210 1.06967 1.05308 1.66142 1.21894 0.85061 0.93356 1.03520 1.16374 0.81484 0.85038 0.83720 1.90919 1.77436 1.17469 1.63467 0.88549 0.88877 0.89185 0.73424 0.94021 0.95351 0.91617 0.87809 0.86719 0.83715 0.81250 0.74564 0.91080 0.89561 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.51 11.16 127.77 1.43 3.94 16 2 N -0.53 -19.66 3.12 -679.66 -2.12 -21.78 16 3 C 0.07 2.88 8.82 83.17 0.73 3.61 16 4 C -0.08 -3.41 6.71 39.35 0.26 -3.15 16 5 C 0.60 24.17 7.61 86.44 0.66 24.83 16 6 O -0.57 -23.41 14.46 -4.37 -0.06 -23.47 16 7 N -0.58 -22.72 2.44 -835.24 -2.04 -24.76 16 8 C 0.23 9.85 4.65 85.63 0.40 10.25 16 9 C -0.55 -24.39 7.03 25.60 0.18 -24.21 16 10 H 0.07 2.94 7.81 -2.91 -0.02 2.92 16 11 C 0.04 1.77 4.93 84.66 0.42 2.19 16 12 N -0.90 -42.20 13.29 21.45 0.28 -41.91 16 13 Si 0.94 36.28 29.54 68.60 2.03 38.30 16 14 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 15 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 16 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 17 C 0.20 6.89 5.88 85.63 0.50 7.39 16 18 C -0.05 -1.55 6.90 24.83 0.17 -1.38 16 19 C -0.20 -6.21 10.81 22.19 0.24 -5.97 16 20 C -0.23 -5.90 10.91 22.19 0.24 -5.65 16 21 C -0.04 -1.00 12.09 66.97 0.81 -0.19 16 22 O -0.19 -6.25 10.65 -2.56 -0.03 -6.28 16 23 N -0.52 -20.18 3.21 -667.06 -2.14 -22.32 16 24 C 0.10 3.30 10.67 127.77 1.36 4.67 16 25 C 0.63 25.82 8.49 179.11 1.52 27.34 16 26 O -0.61 -27.09 17.35 -4.45 -0.08 -27.17 16 27 H 0.10 2.58 7.68 -2.39 -0.02 2.57 16 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.25 10.54 2.66 -2.91 -0.01 10.53 16 31 H 0.04 1.88 5.01 -2.39 -0.01 1.87 16 32 H 0.03 1.31 8.06 -2.39 -0.02 1.29 16 33 H 0.27 12.28 8.31 -92.71 -0.77 11.51 16 34 H 0.10 3.37 8.07 -2.38 -0.02 3.35 16 35 H 0.11 3.63 7.52 -2.39 -0.02 3.62 16 36 H 0.15 4.55 8.06 -2.91 -0.02 4.53 16 37 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 38 H 0.24 3.61 8.06 -2.91 -0.02 3.58 16 39 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.09 2.55 8.08 -2.39 -0.02 2.53 16 41 H 0.10 3.17 6.31 -2.39 -0.02 3.15 16 Total: -1.00 -59.47 350.16 5.84 -53.64 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 1.07 Total: 32.10 kcal Atomic # 6 Polarization: 34.73 SS G_CDS: 8.93 Total: 43.66 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -6.02 Total: -110.77 kcal Atomic # 8 Polarization: -56.76 SS G_CDS: -0.17 Total: -56.92 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.30 kcal Total: -59.47 5.84 -53.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900454555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.637 kcal (2) G-P(sol) polarization free energy of solvation -59.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds