Wall clock time and date at job start Tue Mar 31 2020 12:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47250 * 2 1 4 4 H 1.08994 * 109.47168 * 304.99807 * 3 2 1 5 5 N 1.46501 * 109.46956 * 65.00080 * 3 2 1 6 6 C 1.38822 * 119.99652 * 274.99634 * 5 3 2 7 7 C 1.39955 * 119.97349 * 359.72626 * 6 5 3 8 8 N 1.32135 * 120.32006 * 179.74515 * 7 6 5 9 9 C 1.31929 * 120.27078 * 0.53081 * 8 7 6 10 10 C 1.40684 * 119.93190 * 359.73296 * 9 8 7 11 11 C 1.41276 * 120.15383 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00150 * 353.74018 * 11 10 9 13 13 C 1.40057 * 119.99740 * 173.74679 * 11 10 9 14 14 N 1.30738 * 120.00218 * 6.26828 * 13 11 10 15 15 Si 1.86805 * 119.99813 * 186.26490 * 13 11 10 16 16 H 1.48494 * 109.46957 * 60.00488 * 15 13 11 17 17 H 1.48500 * 109.47004 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47226 * 299.99923 * 15 13 11 19 19 N 1.32239 * 119.96857 * 180.02562 * 6 5 3 20 20 C 1.50702 * 109.47269 * 184.99930 * 3 2 1 21 21 C 1.38263 * 119.96465 * 280.27816 * 20 3 2 22 22 C 1.38212 * 120.06897 * 180.27340 * 21 20 3 23 23 C 1.38411 * 120.00094 * 359.72767 * 22 21 20 24 24 F 1.35105 * 120.03653 * 180.02562 * 23 22 21 25 25 C 1.38648 * 119.92973 * 359.97438 * 23 22 21 26 26 F 1.35102 * 120.03685 * 180.02562 * 25 23 22 27 27 C 1.38216 * 119.96670 * 99.99684 * 20 3 2 28 28 H 1.09004 * 109.47187 * 59.99918 * 1 2 3 29 29 H 1.09001 * 109.47301 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47141 * 300.00376 * 1 2 3 31 31 H 1.08997 * 109.47266 * 240.00036 * 2 1 3 32 32 H 1.09004 * 109.47187 * 120.00082 * 2 1 3 33 33 H 0.97002 * 119.99984 * 95.00216 * 5 3 2 34 34 H 1.07996 * 119.83998 * 0.02562 * 7 6 5 35 35 H 1.07995 * 120.03391 * 179.74570 * 9 8 7 36 36 H 0.96995 * 120.00116 * 179.97438 * 14 13 11 37 37 H 1.08003 * 119.96612 * 359.97438 * 21 20 3 38 38 H 1.07997 * 120.00124 * 179.69936 * 22 21 20 39 39 H 1.07996 * 119.99423 * 0.02562 * 27 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.3986 2.6814 1.3704 7 6 -0.4926 2.6491 0.2917 8 7 -1.6896 3.1984 0.3987 9 6 -2.0513 3.7915 1.5203 10 6 -1.1622 3.8352 2.6096 11 6 -1.5445 4.4695 3.8127 12 1 -2.4784 5.0092 3.8655 13 6 -0.7122 4.3984 4.9369 14 7 0.4716 3.8521 4.8404 15 14 -1.2936 5.0844 6.5743 16 1 -2.5286 4.3765 6.9970 17 1 -0.2357 4.8868 7.5975 18 1 -1.5788 6.5346 6.4302 19 7 0.0495 3.2729 2.5004 20 6 3.5419 1.4443 -0.1238 21 6 4.3267 1.1972 0.9874 22 6 5.7044 1.2040 0.8774 23 6 6.2998 1.4526 -0.3471 24 9 7.6465 1.4588 -0.4555 25 6 5.5127 1.6942 -1.4626 26 9 6.0916 1.9367 -2.6591 27 6 4.1333 1.6871 -1.3492 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2719 2.1231 1.9978 34 1 -0.2022 2.1690 -0.6311 35 1 -3.0290 4.2428 1.6021 36 1 1.0481 3.8032 5.6189 37 1 3.8628 1.0036 1.9432 38 1 6.3165 1.0157 1.7471 39 1 3.5191 1.8759 -2.2172 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162462757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:14 Heat of formation + Delta-G solvation = -15.404425 kcal Electronic energy + Delta-G solvation = -25996.200940 eV Core-core repulsion = 21960.840802 eV Total energy + Delta-G solvation = -4035.360138 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.119 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.60803 -48.68536 -39.92445 -38.83894 -36.38760 -33.94477 -32.73214 -31.31050 -30.98548 -30.80588 -28.76752 -26.14629 -25.43981 -23.53878 -22.63570 -22.26214 -21.66828 -20.18495 -18.23074 -17.67790 -17.32195 -16.93695 -16.57144 -16.44770 -15.69620 -15.16387 -15.10227 -14.91495 -14.67445 -14.53901 -14.33588 -14.13160 -14.05659 -13.27527 -13.00288 -12.81122 -12.75754 -12.39976 -11.99038 -11.61998 -11.59654 -11.52191 -11.36162 -11.10016 -10.88704 -10.77125 -10.48109 -10.35433 -9.89615 -9.68239 -9.41713 -9.26097 -8.80132 -8.40250 -7.41927 -6.76223 -6.48570 -4.67839 0.70644 0.80194 2.67615 3.01340 3.03424 3.08023 3.14601 3.25326 3.57681 3.84400 3.86299 4.21135 4.32812 4.46176 4.68239 4.81285 4.92444 5.14873 5.23594 5.42003 5.56627 5.58591 5.74737 5.76166 5.84942 5.86118 5.98286 6.01573 6.15638 6.20184 6.26119 6.39252 6.54429 6.55743 6.73028 6.78319 7.00152 7.09853 7.55531 7.88470 7.99579 8.35371 8.52149 8.80325 9.38576 9.95891 10.15016 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.015334 B = 0.003439 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.577358 B = 8139.237137 C = 9287.022924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C 0.202 3.798 4 H 0.091 0.909 5 N -0.725 5.725 6 C 0.374 3.626 7 C -0.168 4.168 8 N -0.409 5.409 9 C -0.109 4.109 10 C 0.246 3.754 11 C -0.417 4.417 12 H 0.089 0.911 13 C 0.069 3.931 14 N -0.711 5.711 15 Si 0.910 3.090 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.263 1.263 19 N -0.507 5.507 20 C -0.061 4.061 21 C -0.088 4.088 22 C -0.121 4.121 23 C 0.061 3.939 24 F -0.132 7.132 25 C 0.068 3.932 26 F -0.130 7.130 27 C -0.116 4.116 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.395 0.605 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.274 0.726 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.354 -6.754 -5.586 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.169 4.169 3 C 0.095 3.905 4 H 0.109 0.891 5 N -0.362 5.362 6 C 0.130 3.870 7 C -0.330 4.330 8 N -0.120 5.120 9 C -0.279 4.279 10 C 0.118 3.882 11 C -0.450 4.450 12 H 0.107 0.893 13 C -0.157 4.157 14 N -0.332 5.332 15 Si 0.734 3.266 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.188 1.188 19 N -0.233 5.233 20 C -0.062 4.062 21 C -0.107 4.107 22 C -0.139 4.139 23 C 0.041 3.959 24 F -0.110 7.110 25 C 0.048 3.952 26 F -0.109 7.109 27 C -0.135 4.135 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.232 0.768 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.085 0.915 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.606 -6.859 -5.719 13.117 hybrid contribution 0.534 0.340 0.842 1.053 sum 10.140 -6.519 -4.877 13.005 Atomic orbital electron populations 1.22121 0.94438 1.00842 1.03675 1.22044 0.97429 0.95527 1.01928 1.19655 0.87642 0.93883 0.89345 0.89088 1.44176 1.15100 1.62618 1.14346 1.19439 0.85575 0.89801 0.92151 1.22241 0.93902 1.17329 0.99486 1.67536 1.15496 1.04011 1.24964 1.22881 1.01572 1.11239 0.92204 1.19053 0.86947 0.89245 0.92946 1.19594 1.04654 1.27174 0.93536 0.89253 1.26108 0.94293 0.94266 1.01039 1.70090 1.05809 1.26932 1.30329 0.86341 0.79500 0.80366 0.80418 1.18774 1.20223 1.18785 1.69016 1.17926 1.16504 1.19860 1.20002 0.96435 0.97296 0.92441 1.20994 0.92205 0.98010 0.99473 1.21082 0.95761 1.01227 0.95880 1.17703 0.77287 1.06690 0.94267 1.91520 1.28531 1.94247 1.96744 1.17603 0.91406 1.05644 0.80523 1.91526 1.84655 1.91975 1.42717 1.20934 0.91760 1.01458 0.99386 0.92094 0.93757 0.90814 0.91676 0.91659 0.76814 0.85457 0.85393 0.91471 0.83887 0.83558 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.22 37.15 0.31 -1.95 16 2 C -0.13 -1.61 5.58 -26.73 -0.15 -1.76 16 3 C 0.20 2.71 2.41 -69.08 -0.17 2.54 16 4 H 0.09 1.26 6.30 -51.93 -0.33 0.93 16 5 N -0.72 -12.63 5.13 -54.92 -0.28 -12.91 16 6 C 0.37 8.32 6.48 -155.02 -1.00 7.32 16 7 C -0.17 -3.68 7.89 -16.78 -0.13 -3.82 16 8 N -0.41 -9.86 10.47 -12.11 -0.13 -9.99 16 9 C -0.11 -2.73 10.97 -16.59 -0.18 -2.91 16 10 C 0.25 6.48 6.54 -84.83 -0.55 5.93 16 11 C -0.42 -10.59 9.15 -37.75 -0.35 -10.93 16 12 H 0.09 2.10 7.85 -52.49 -0.41 1.68 16 13 C 0.07 1.66 5.49 -17.34 -0.10 1.57 16 14 N -0.71 -17.66 11.51 55.55 0.64 -17.02 16 15 Si 0.91 17.60 29.57 -169.99 -5.03 12.57 16 16 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 17 H -0.28 -5.25 7.11 56.52 0.40 -4.84 16 18 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 19 N -0.51 -13.07 8.10 -10.14 -0.08 -13.15 16 20 C -0.06 -0.71 4.95 -104.62 -0.52 -1.22 16 21 C -0.09 -0.96 9.05 -39.58 -0.36 -1.32 16 22 C -0.12 -1.24 10.02 -39.53 -0.40 -1.63 16 23 C 0.06 0.71 7.31 -39.37 -0.29 0.43 16 24 F -0.13 -1.65 17.18 2.25 0.04 -1.61 16 25 C 0.07 0.82 7.31 -39.37 -0.29 0.53 16 26 F -0.13 -1.65 17.18 2.25 0.04 -1.61 16 27 C -0.12 -1.28 9.65 -39.53 -0.38 -1.66 16 28 H 0.06 0.89 6.34 -51.93 -0.33 0.56 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.37 5.40 -51.93 -0.28 1.09 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 6.81 7.01 -40.82 -0.29 6.53 16 34 H 0.13 2.44 4.01 -52.49 -0.21 2.23 16 35 H 0.13 2.94 8.06 -52.49 -0.42 2.51 16 36 H 0.27 6.18 8.29 -40.82 -0.34 5.85 16 37 H 0.14 1.46 6.93 -52.48 -0.36 1.10 16 38 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.15 1.37 8.03 -52.49 -0.42 0.95 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -28.54 332.19 -8.23 -36.77 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -3.88 Total: 10.84 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -4.55 Total: -8.89 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.15 Total: -53.08 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.08 Total: -3.22 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.54 -8.23 -36.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162462757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.363 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds