Wall clock time and date at job start Tue Mar 31 2020 14:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45204 * 109.47115 * 2 1 4 4 C 1.34228 * 116.99910 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00091 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99641 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.77318 * 300.47168 * 6 4 3 8 8 C 1.51314 * 109.62677 * 60.94888 * 6 4 3 9 9 O 1.20758 * 121.00442 * 349.96819 * 8 6 4 10 10 C 1.51413 * 117.98904 * 169.98712 * 8 6 4 11 11 C 1.53379 * 108.12039 * 310.90461 * 10 8 6 12 12 C 1.53018 * 109.13184 * 52.46119 * 11 10 8 13 13 N 1.46793 * 109.89743 * 297.14738 * 12 11 10 14 14 C 1.38822 * 110.99620 * 189.45360 * 13 12 11 15 15 C 1.39968 * 119.96896 * 92.50883 * 14 13 12 16 16 N 1.32128 * 120.31755 * 180.02562 * 15 14 13 17 17 C 1.31939 * 120.27163 * 359.68593 * 16 15 14 18 18 C 1.40681 * 119.93178 * 0.53871 * 17 16 15 19 19 C 1.41269 * 120.15765 * 179.75467 * 18 17 16 20 20 H 1.08000 * 119.99766 * 353.34230 * 19 18 17 21 21 C 1.40056 * 120.00087 * 173.61055 * 19 18 17 22 22 N 1.30723 * 120.00174 * 6.40515 * 21 19 18 23 23 Si 1.86800 * 120.00053 * 186.39932 * 21 19 18 24 24 H 1.48501 * 109.46972 * 89.99910 * 23 21 19 25 25 H 1.48496 * 109.47247 * 210.00358 * 23 21 19 26 26 H 1.48505 * 109.47170 * 330.00647 * 23 21 19 27 27 N 1.32235 * 119.97422 * 272.48078 * 14 13 12 28 28 H 1.09008 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47290 * 299.99845 * 1 2 3 30 30 H 1.08996 * 109.47593 * 60.00473 * 1 2 3 31 31 H 1.09006 * 109.47057 * 240.00167 * 2 1 3 32 32 H 1.08999 * 109.47446 * 120.00286 * 2 1 3 33 33 H 1.08997 * 109.73744 * 70.55983 * 10 8 6 34 34 H 1.09002 * 109.73350 * 191.20663 * 10 8 6 35 35 H 1.08997 * 109.52910 * 172.36167 * 11 10 8 36 36 H 1.09002 * 109.52994 * 292.56303 * 11 10 8 37 37 H 1.09003 * 109.39455 * 177.01266 * 12 11 10 38 38 H 1.08998 * 109.39734 * 57.28021 * 12 11 10 39 39 H 1.07995 * 119.84285 * 359.97438 * 15 14 13 40 40 H 1.08001 * 120.03292 * 180.27916 * 17 16 15 41 41 H 0.97000 * 120.00334 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5804 3.4776 -0.8835 8 6 3.4759 3.6709 1.2466 9 8 2.6270 3.2089 1.9706 10 6 4.1272 5.0018 1.5584 11 6 5.6471 4.8254 1.4530 12 6 5.9869 4.2018 0.0976 13 7 5.3897 2.8645 -0.0007 14 6 5.8539 2.1938 -1.1240 15 6 6.9723 1.3578 -1.0268 16 7 7.4204 0.7166 -2.0916 17 6 6.8134 0.8540 -3.2550 18 6 5.6913 1.6951 -3.3663 19 6 5.0408 1.8498 -4.6108 20 1 5.4658 1.4091 -5.5006 21 6 3.8480 2.5793 -4.6917 22 7 3.4022 3.2214 -3.6439 23 14 2.8942 2.6348 -6.2969 24 1 1.9206 1.5140 -6.3332 25 1 2.1669 3.9257 -6.3961 26 1 3.8368 2.5087 -7.4374 27 7 5.2389 2.3448 -2.2849 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.7932 5.7520 0.8416 34 1 3.8614 5.3139 2.5684 35 1 6.1335 5.7970 1.5393 36 1 5.9943 4.1709 2.2526 37 1 7.0694 4.1234 -0.0036 38 1 5.5947 4.8330 -0.6998 39 1 7.4720 1.2370 -0.0770 40 1 7.1802 0.3245 -4.1219 41 1 2.5762 3.7269 -3.7001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166734269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:39 Heat of formation + Delta-G solvation = -60.861702 kcal Electronic energy + Delta-G solvation = -28410.934303 eV Core-core repulsion = 24484.690505 eV Total energy + Delta-G solvation = -3926.243798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.77805 -39.17277 -38.91437 -37.03455 -35.86664 -34.10439 -33.28150 -31.61481 -31.39448 -29.90772 -28.94728 -26.24478 -25.36187 -23.37387 -22.54325 -22.28784 -21.09513 -20.65587 -18.96496 -17.74441 -17.39617 -16.78564 -16.32957 -15.75853 -15.51943 -15.30203 -15.09008 -14.93617 -14.77906 -14.22620 -14.13416 -13.76305 -13.38115 -13.09819 -12.95217 -12.74590 -12.53263 -12.16024 -11.93037 -11.63992 -11.54240 -11.47796 -11.43031 -11.30728 -11.11197 -10.92069 -10.83347 -10.49670 -10.10173 -10.04133 -9.88776 -9.63047 -9.39482 -9.15102 -8.52821 -7.70163 -7.42831 -6.63194 -4.75787 1.94429 2.40809 2.79962 2.86104 2.96407 2.98610 2.99089 3.14246 3.77186 4.09424 4.17967 4.53660 4.79021 4.90633 4.98317 5.14870 5.17098 5.27478 5.40869 5.51748 5.58366 5.66752 5.71962 5.75649 5.79351 5.91101 5.94881 5.98746 6.05258 6.10924 6.13386 6.28686 6.38896 6.74619 6.86637 6.93335 7.03795 7.16353 7.36169 7.49963 7.74497 8.00012 8.37359 8.38227 8.63241 9.18811 9.70309 10.02944 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.009950 B = 0.006597 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.508938 B = 4243.545317 C = 5203.950217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.066 3.934 3 O -0.350 6.350 4 C 0.491 3.509 5 O -0.482 6.482 6 C 0.050 3.950 7 H 0.144 0.856 8 C 0.378 3.622 9 O -0.440 6.440 10 C -0.165 4.165 11 C -0.111 4.111 12 C 0.056 3.944 13 N -0.452 5.452 14 C 0.276 3.724 15 C -0.070 4.070 16 N -0.424 5.424 17 C -0.067 4.067 18 C 0.225 3.775 19 C -0.417 4.417 20 H 0.090 0.910 21 C 0.072 3.928 22 N -0.722 5.722 23 Si 0.912 3.088 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.259 1.259 27 N -0.486 5.486 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.755 4.959 6.021 8.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.008 4.008 3 O -0.267 6.267 4 C 0.331 3.669 5 O -0.367 6.367 6 C -0.060 4.060 7 H 0.161 0.839 8 C 0.251 3.749 9 O -0.311 6.311 10 C -0.203 4.203 11 C -0.149 4.149 12 C -0.070 4.070 13 N -0.178 5.178 14 C 0.038 3.962 15 C -0.230 4.230 16 N -0.136 5.136 17 C -0.236 4.236 18 C 0.098 3.902 19 C -0.449 4.449 20 H 0.108 0.892 21 C -0.154 4.154 22 N -0.344 5.344 23 Si 0.736 3.264 24 H -0.193 1.193 25 H -0.200 1.200 26 H -0.183 1.183 27 N -0.208 5.208 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.053 4.269 6.948 9.106 hybrid contribution -0.719 0.268 -1.539 1.719 sum -4.772 4.537 5.409 8.522 Atomic orbital electron populations 1.21760 0.93012 1.02421 1.03344 1.22885 0.94979 0.80791 1.02158 1.86459 1.24327 1.31639 1.84263 1.22512 0.80587 0.91392 0.72375 1.90675 1.60078 1.42092 1.43809 1.21906 0.90883 0.92202 1.01032 0.83883 1.24567 0.79426 0.87518 0.83356 1.90423 1.26374 1.67732 1.46545 1.22367 0.97377 0.96096 1.04419 1.21636 0.93379 1.01681 0.98192 1.22203 1.00644 0.87360 0.96834 1.59969 1.02293 1.18033 1.37510 1.20465 0.93344 0.93806 0.88608 1.22069 1.00441 1.03446 0.97092 1.67724 1.28562 1.18002 0.99282 1.23130 0.99385 1.05759 0.95352 1.19136 0.89969 0.88991 0.92148 1.19606 1.04665 1.26993 0.93671 0.89154 1.26061 0.97660 0.93643 0.98014 1.69985 1.17158 1.18033 1.29211 0.86244 0.79913 0.78582 0.81708 1.19274 1.19998 1.18315 1.69258 1.30428 1.23915 0.97202 0.90633 0.91626 0.91581 0.91529 0.91733 0.87962 0.88756 0.89684 0.90271 0.89176 0.92709 0.85255 0.84890 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.29 37.15 0.38 -1.55 16 2 C 0.07 1.14 6.19 37.15 0.23 1.37 16 3 O -0.35 -7.22 9.55 -44.43 -0.42 -7.64 16 4 C 0.49 11.02 6.44 36.01 0.23 11.25 16 5 O -0.48 -12.09 14.75 -18.75 -0.28 -12.37 16 6 C 0.05 0.98 2.19 -69.61 -0.15 0.83 16 7 H 0.14 3.04 7.61 -51.93 -0.40 2.64 16 8 C 0.38 6.33 6.71 -28.38 -0.19 6.14 16 9 O -0.44 -8.32 16.46 -7.91 -0.13 -8.45 16 10 C -0.16 -1.94 6.24 -27.34 -0.17 -2.11 16 11 C -0.11 -1.25 6.13 -26.53 -0.16 -1.42 16 12 C 0.06 0.86 5.31 -3.87 -0.02 0.84 16 13 N -0.45 -8.94 4.26 -167.69 -0.72 -9.66 16 14 C 0.28 6.49 3.55 -155.02 -0.55 5.94 16 15 C -0.07 -1.69 11.17 -16.78 -0.19 -1.88 16 16 N -0.42 -10.66 10.47 -12.11 -0.13 -10.79 16 17 C -0.07 -1.69 10.97 -16.58 -0.18 -1.87 16 18 C 0.23 5.92 6.54 -84.84 -0.55 5.36 16 19 C -0.42 -10.43 9.15 -37.75 -0.35 -10.77 16 20 H 0.09 2.10 7.86 -52.49 -0.41 1.69 16 21 C 0.07 1.69 5.49 -17.34 -0.10 1.59 16 22 N -0.72 -17.36 11.51 55.55 0.64 -16.72 16 23 Si 0.91 17.48 29.56 -169.99 -5.03 12.46 16 24 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 26 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 27 N -0.49 -12.39 6.72 -10.14 -0.07 -12.46 16 28 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 32 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.34 8.06 -51.93 -0.42 0.93 16 38 H 0.05 0.88 8.13 -51.93 -0.42 0.45 16 39 H 0.13 2.88 8.06 -52.49 -0.42 2.46 16 40 H 0.13 3.03 8.06 -52.49 -0.42 2.60 16 41 H 0.27 6.02 8.29 -40.82 -0.34 5.68 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -31.57 350.30 -8.05 -39.62 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.43 Total: 7.00 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: -1.77 Total: 13.73 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.27 Total: -49.62 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.83 Total: -28.46 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.57 -8.05 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166734269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.239 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds