Wall clock time and date at job start Tue Mar 31 2020 14:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45204 * 109.47115 * 2 1 4 4 C 1.34228 * 116.99910 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00091 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99641 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.77318 * 300.47168 * 6 4 3 8 8 C 1.51314 * 109.62677 * 60.94888 * 6 4 3 9 9 O 1.20758 * 121.00442 * 349.96819 * 8 6 4 10 10 C 1.51413 * 117.98904 * 169.98712 * 8 6 4 11 11 C 1.53379 * 108.12039 * 310.90461 * 10 8 6 12 12 C 1.53018 * 109.13184 * 52.46119 * 11 10 8 13 13 N 1.46793 * 109.89743 * 297.14738 * 12 11 10 14 14 C 1.38822 * 110.99620 * 189.45360 * 13 12 11 15 15 C 1.39968 * 119.96896 * 92.50883 * 14 13 12 16 16 N 1.32128 * 120.31755 * 180.02562 * 15 14 13 17 17 C 1.31939 * 120.27163 * 359.68593 * 16 15 14 18 18 C 1.40681 * 119.93178 * 0.53871 * 17 16 15 19 19 C 1.41269 * 120.15765 * 179.75467 * 18 17 16 20 20 H 1.08000 * 119.99766 * 353.34230 * 19 18 17 21 21 C 1.40056 * 120.00087 * 173.61055 * 19 18 17 22 22 N 1.30723 * 120.00174 * 6.40515 * 21 19 18 23 23 Si 1.86800 * 120.00053 * 186.39932 * 21 19 18 24 24 H 1.48501 * 109.46972 * 89.99910 * 23 21 19 25 25 H 1.48496 * 109.47247 * 210.00358 * 23 21 19 26 26 H 1.48505 * 109.47170 * 330.00647 * 23 21 19 27 27 N 1.32235 * 119.97422 * 272.48078 * 14 13 12 28 28 H 1.09008 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47290 * 299.99845 * 1 2 3 30 30 H 1.08996 * 109.47593 * 60.00473 * 1 2 3 31 31 H 1.09006 * 109.47057 * 240.00167 * 2 1 3 32 32 H 1.08999 * 109.47446 * 120.00286 * 2 1 3 33 33 H 1.08997 * 109.73744 * 70.55983 * 10 8 6 34 34 H 1.09002 * 109.73350 * 191.20663 * 10 8 6 35 35 H 1.08997 * 109.52910 * 172.36167 * 11 10 8 36 36 H 1.09002 * 109.52994 * 292.56303 * 11 10 8 37 37 H 1.09003 * 109.39455 * 177.01266 * 12 11 10 38 38 H 1.08998 * 109.39734 * 57.28021 * 12 11 10 39 39 H 1.07995 * 119.84285 * 359.97438 * 15 14 13 40 40 H 1.08001 * 120.03292 * 180.27916 * 17 16 15 41 41 H 0.97000 * 120.00334 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5804 3.4776 -0.8835 8 6 3.4759 3.6709 1.2466 9 8 2.6270 3.2089 1.9706 10 6 4.1272 5.0018 1.5584 11 6 5.6471 4.8254 1.4530 12 6 5.9869 4.2018 0.0976 13 7 5.3897 2.8645 -0.0007 14 6 5.8539 2.1938 -1.1240 15 6 6.9723 1.3578 -1.0268 16 7 7.4204 0.7166 -2.0916 17 6 6.8134 0.8540 -3.2550 18 6 5.6913 1.6951 -3.3663 19 6 5.0408 1.8498 -4.6108 20 1 5.4658 1.4091 -5.5006 21 6 3.8480 2.5793 -4.6917 22 7 3.4022 3.2214 -3.6439 23 14 2.8942 2.6348 -6.2969 24 1 1.9206 1.5140 -6.3332 25 1 2.1669 3.9257 -6.3961 26 1 3.8368 2.5087 -7.4374 27 7 5.2389 2.3448 -2.2849 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.7932 5.7520 0.8416 34 1 3.8614 5.3139 2.5684 35 1 6.1335 5.7970 1.5393 36 1 5.9943 4.1709 2.2526 37 1 7.0694 4.1234 -0.0036 38 1 5.5947 4.8330 -0.6998 39 1 7.4720 1.2370 -0.0770 40 1 7.1802 0.3245 -4.1219 41 1 2.5762 3.7269 -3.7001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166734269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:38 Heat of formation + Delta-G solvation = -81.002884 kcal Electronic energy + Delta-G solvation = -28411.807690 eV Core-core repulsion = 24484.690505 eV Total energy + Delta-G solvation = -3927.117185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.35221 -40.92117 -40.44615 -38.57829 -37.51923 -35.94731 -34.65342 -33.26040 -32.87032 -31.50597 -30.46794 -27.99892 -26.83065 -24.85855 -24.13326 -23.79210 -22.70952 -22.21369 -20.33548 -19.53089 -19.01829 -18.46373 -17.89412 -17.41812 -17.17785 -16.97696 -16.71858 -16.41430 -16.20929 -15.64543 -15.50170 -15.09057 -14.93375 -14.72112 -14.43034 -14.27343 -13.70644 -13.43139 -13.40610 -13.35690 -13.09015 -13.05052 -12.92992 -12.68934 -12.60843 -12.15098 -12.08038 -11.94401 -11.74320 -11.66109 -11.62724 -11.53027 -10.98363 -10.74507 -10.19131 -9.57499 -9.22106 -8.44517 -6.67189 0.51559 0.66338 1.02676 1.12487 1.38512 1.49150 1.50237 1.51991 2.15634 2.60033 2.71543 2.83212 3.48632 3.67186 3.74731 3.85421 3.89622 3.97707 3.99801 4.09580 4.13416 4.18308 4.34963 4.46487 4.50395 4.62750 4.70684 4.71624 4.80648 4.87688 4.94389 5.01491 5.03004 5.08493 5.23846 5.27240 5.34964 5.53353 5.66319 5.93676 6.12731 6.19871 6.51386 6.66338 6.75967 7.27946 7.80618 8.25510 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.009950 B = 0.006597 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.508938 B = 4243.545317 C = 5203.950217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.056 3.944 3 O -0.356 6.356 4 C 0.481 3.519 5 O -0.521 6.521 6 C 0.046 3.954 7 H 0.128 0.872 8 C 0.383 3.617 9 O -0.466 6.466 10 C -0.152 4.152 11 C -0.098 4.098 12 C 0.051 3.949 13 N -0.455 5.455 14 C 0.283 3.717 15 C -0.092 4.092 16 N -0.433 5.433 17 C -0.094 4.094 18 C 0.194 3.806 19 C -0.438 4.438 20 H 0.099 0.901 21 C 0.030 3.970 22 N -0.742 5.742 23 Si 0.987 3.013 24 H -0.269 1.269 25 H -0.263 1.263 26 H -0.252 1.252 27 N -0.501 5.501 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.999 7.011 6.499 10.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.018 4.018 3 O -0.273 6.273 4 C 0.324 3.676 5 O -0.409 6.409 6 C -0.064 4.064 7 H 0.145 0.855 8 C 0.257 3.743 9 O -0.338 6.338 10 C -0.189 4.189 11 C -0.136 4.136 12 C -0.075 4.075 13 N -0.181 5.181 14 C 0.044 3.956 15 C -0.253 4.253 16 N -0.145 5.145 17 C -0.262 4.262 18 C 0.067 3.933 19 C -0.469 4.469 20 H 0.117 0.883 21 C -0.194 4.194 22 N -0.363 5.363 23 Si 0.807 3.193 24 H -0.194 1.194 25 H -0.188 1.188 26 H -0.175 1.175 27 N -0.223 5.223 28 H 0.125 0.875 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.160 0.840 40 H 0.164 0.836 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.289 6.343 7.432 11.110 hybrid contribution -0.371 -0.397 -1.639 1.727 sum -5.660 5.946 5.793 10.047 Atomic orbital electron populations 1.21780 0.89330 1.04620 1.03671 1.23227 0.97842 0.79331 1.01376 1.86469 1.23543 1.33556 1.83695 1.23227 0.80934 0.92251 0.71208 1.90641 1.60916 1.43492 1.45819 1.22070 0.90736 0.90921 1.02656 0.85489 1.25036 0.78919 0.88929 0.81373 1.90415 1.27689 1.68831 1.46828 1.22446 0.96863 0.92841 1.06723 1.21673 0.93303 1.03506 0.95114 1.22441 1.00487 0.85059 0.99484 1.60045 1.02479 1.20343 1.35249 1.20763 0.92578 0.93229 0.89079 1.22360 1.01405 1.04118 0.97383 1.67680 1.28919 1.18288 0.99608 1.23316 1.00014 1.06902 0.95946 1.19592 0.90739 0.89774 0.93205 1.20000 1.05644 1.27610 0.93695 0.88260 1.26943 0.97976 0.92819 1.01636 1.70049 1.17572 1.17698 1.31023 0.85113 0.78216 0.78773 0.77173 1.19403 1.18756 1.17531 1.69307 1.30988 1.24401 0.97634 0.87477 0.90775 0.91666 0.93334 0.91577 0.85542 0.85810 0.85189 0.90126 0.88957 0.93365 0.84026 0.83616 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 10.29 71.98 0.74 -2.66 16 2 C 0.06 1.97 6.19 71.98 0.45 2.41 16 3 O -0.36 -15.07 9.55 -46.44 -0.44 -15.51 16 4 C 0.48 22.31 6.44 71.24 0.46 22.76 16 5 O -0.52 -27.32 14.75 21.98 0.32 -27.00 16 6 C 0.05 1.85 2.19 43.58 0.10 1.95 16 7 H 0.13 5.52 7.61 -2.39 -0.02 5.50 16 8 C 0.38 12.29 6.71 29.52 0.20 12.49 16 9 O -0.47 -17.15 16.46 11.86 0.20 -16.95 16 10 C -0.15 -2.98 6.24 30.20 0.19 -2.79 16 11 C -0.10 -1.85 6.13 30.73 0.19 -1.67 16 12 C 0.05 1.48 5.31 86.33 0.46 1.94 16 13 N -0.46 -18.10 4.26 -684.45 -2.92 -21.02 16 14 C 0.28 13.70 3.55 133.38 0.47 14.17 16 15 C -0.09 -4.58 11.17 85.07 0.95 -3.63 16 16 N -0.43 -22.57 10.47 -192.22 -2.01 -24.59 16 17 C -0.09 -4.90 10.97 85.27 0.94 -3.97 16 18 C 0.19 10.56 6.54 40.15 0.26 10.82 16 19 C -0.44 -22.35 9.15 23.46 0.21 -22.14 16 20 H 0.10 4.69 7.86 -2.91 -0.02 4.67 16 21 C 0.03 1.41 5.49 85.30 0.47 1.87 16 22 N -0.74 -35.95 11.51 21.84 0.25 -35.70 16 23 Si 0.99 35.33 29.56 68.60 2.03 37.36 16 24 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 25 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 26 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 27 N -0.50 -26.37 6.72 -186.00 -1.25 -27.62 16 28 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.85 8.13 -2.38 -0.02 1.83 16 32 H 0.07 2.27 8.13 -2.39 -0.02 2.25 16 33 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 2.65 8.06 -2.39 -0.02 2.64 16 38 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16 39 H 0.14 6.49 8.06 -2.91 -0.02 6.46 16 40 H 0.15 6.93 8.06 -2.91 -0.02 6.90 16 41 H 0.28 12.37 8.29 -92.71 -0.77 11.60 16 Total: -1.00 -72.45 350.30 3.30 -69.14 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 1.05 Total: 30.33 kcal Atomic # 6 Polarization: 25.47 SS G_CDS: 6.08 Total: 31.55 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -5.93 Total: -108.92 kcal Atomic # 8 Polarization: -59.54 SS G_CDS: 0.08 Total: -59.46 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Total: -72.45 3.30 -69.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166734269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.858 kcal (2) G-P(sol) polarization free energy of solvation -72.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds