Wall clock time and date at job start Tue Mar 31 2020 14:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.45749 * 117.94842 * 2 1 4 4 C 1.52737 * 110.59233 * 198.88915 * 3 2 1 5 5 H 1.09000 * 109.52797 * 69.41909 * 4 3 2 6 6 N 1.46502 * 109.66772 * 189.73548 * 4 3 2 7 7 C 1.39673 * 119.99975 * 274.40522 * 6 4 3 8 8 C 1.38176 * 119.98914 * 353.75033 * 7 6 4 9 9 C 1.41136 * 119.50500 * 179.97438 * 8 7 6 10 10 C 1.40349 * 120.25185 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00242 * 333.25267 * 10 9 8 12 12 C 1.46523 * 120.00038 * 153.26007 * 10 9 8 13 13 N 1.29512 * 120.00045 * 343.74262 * 12 10 9 14 14 Si 1.86805 * 120.00111 * 163.74306 * 12 10 9 15 15 H 1.48500 * 109.46920 * 89.99810 * 14 12 10 16 16 H 1.48503 * 109.47023 * 209.99945 * 14 12 10 17 17 H 1.48506 * 109.46907 * 329.99967 * 14 12 10 18 18 C 1.41339 * 119.49220 * 359.97438 * 9 8 7 19 19 C 1.36491 * 119.96484 * 359.97438 * 18 9 8 20 20 C 1.38667 * 120.50273 * 359.73038 * 19 18 9 21 21 N 1.48014 * 119.74418 * 180.29726 * 20 19 18 22 22 O 1.31695 * 120.00039 * 142.92151 * 21 20 19 23 23 O 1.31699 * 119.99808 * 322.91041 * 21 20 19 24 24 C 1.53344 * 108.82247 * 309.61726 * 4 3 2 25 25 C 1.53075 * 108.42392 * 67.36939 * 24 4 3 26 26 C 1.33360 * 117.94628 * 180.27045 * 2 1 3 27 27 O 1.21280 * 118.24404 * 357.74849 * 26 2 1 28 28 H 1.09004 * 109.46973 * 179.73075 * 1 2 3 29 29 H 1.08992 * 109.47171 * 299.73533 * 1 2 3 30 30 H 1.09007 * 109.46971 * 59.73617 * 1 2 3 31 31 H 1.08999 * 109.30601 * 319.39419 * 3 2 1 32 32 H 1.09001 * 109.29670 * 78.76495 * 3 2 1 33 33 H 0.96997 * 119.99799 * 94.39871 * 6 4 3 34 34 H 1.07994 * 120.24758 * 0.02562 * 8 7 6 35 35 H 0.96998 * 120.00040 * 180.02562 * 13 12 10 36 36 H 1.08003 * 120.01787 * 180.02562 * 18 9 8 37 37 H 1.07998 * 119.74999 * 180.02562 * 19 18 9 38 38 H 1.08999 * 109.67658 * 307.63100 * 24 4 3 39 39 H 1.08999 * 109.67092 * 187.09865 * 24 4 3 40 40 H 1.08997 * 109.39868 * 190.97430 * 25 24 4 41 41 H 1.08997 * 109.40490 * 71.22758 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5948 1.1280 -0.4629 5 1 3.6127 0.8810 -1.5244 6 7 4.3255 2.3776 -0.2368 7 6 4.2864 3.3927 -1.1954 8 6 3.6678 3.1713 -2.4109 9 6 3.6338 4.2043 -3.3719 10 6 3.0101 3.9963 -4.6119 11 1 2.9412 2.9992 -5.0213 12 6 2.4526 5.1319 -5.3512 13 7 2.2468 6.2592 -4.7478 14 14 2.0386 4.9536 -7.1641 15 1 0.6352 4.4902 -7.3080 16 1 2.1982 6.2664 -7.8396 17 1 2.9534 3.9626 -7.7856 18 6 4.2328 5.4499 -3.0761 19 6 4.8372 5.6458 -1.8681 20 6 4.8648 4.6323 -0.9222 21 7 5.5191 4.8653 0.3849 22 8 5.0050 4.3460 1.4805 23 8 6.6156 5.5916 0.4521 24 6 4.2492 -0.0030 0.3397 25 6 3.5838 -1.3238 -0.0548 26 6 2.0900 -1.1781 -0.0056 27 8 1.4158 -2.1856 0.0317 28 1 -0.3633 -1.0277 -0.0048 29 1 -0.3633 0.5097 0.8923 30 1 -0.3633 0.5180 -0.8877 31 1 1.6271 1.9719 -0.6695 32 1 2.1398 1.6996 1.0091 33 1 4.8362 2.5000 0.5787 34 1 3.2129 2.2152 -2.6237 35 1 1.8774 7.0109 -5.2371 36 1 4.2114 6.2464 -3.8051 37 1 5.2934 6.5991 -1.6455 38 1 4.1088 0.1747 1.4059 39 1 5.3142 -0.0461 0.1115 40 1 3.8942 -2.1065 0.6374 41 1 3.8880 -1.5948 -1.0658 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167250152.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:40 Heat of formation + Delta-G solvation = -1.597803 kcal Electronic energy + Delta-G solvation = -26937.441865 eV Core-core repulsion = 23013.767943 eV Total energy + Delta-G solvation = -3923.673922 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.59115 -39.03303 -37.23055 -36.77006 -35.06684 -34.24190 -33.30726 -32.77219 -30.90672 -29.42211 -27.81989 -27.02711 -26.71547 -24.34712 -23.75743 -22.55071 -21.05702 -20.64020 -18.82122 -18.22880 -17.31503 -16.93699 -16.69395 -16.51533 -16.12365 -15.97241 -15.44327 -15.04884 -14.49935 -14.22194 -14.13675 -13.67864 -13.40669 -13.35677 -12.98150 -12.72562 -12.65585 -12.44727 -12.30860 -11.94236 -11.87631 -11.68832 -11.57219 -11.45081 -11.11552 -10.90158 -10.75712 -10.20053 -10.14289 -10.03587 -9.79979 -9.73833 -9.62121 -9.43345 -8.75120 -8.33565 -7.68545 -7.04074 -5.17618 0.71774 2.26975 2.58171 2.61649 2.63925 2.64779 2.67473 2.76370 2.94306 3.31307 3.67322 3.81423 4.50314 4.56685 4.67567 4.87992 4.96625 5.17497 5.22313 5.36893 5.45079 5.53861 5.59679 5.62775 5.68086 5.81746 5.92733 5.99248 6.06884 6.19271 6.25624 6.30880 6.38236 6.47448 6.71149 7.02343 7.17541 7.31111 7.36859 7.37791 7.56212 7.80494 8.01325 8.08623 8.10009 8.15984 8.24054 9.18286 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.009292 B = 0.004899 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.706233 B = 5714.594793 C = 8081.700354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.600 5.600 3 C 0.095 3.905 4 C 0.144 3.856 5 H 0.093 0.907 6 N -0.735 5.735 7 C 0.299 3.701 8 C -0.307 4.307 9 C 0.140 3.860 10 C -0.388 4.388 11 H 0.100 0.900 12 C 0.066 3.934 13 N -0.717 5.717 14 Si 0.927 3.073 15 H -0.259 1.259 16 H -0.267 1.267 17 H -0.250 1.250 18 C -0.171 4.171 19 C -0.035 4.035 20 C -0.166 4.166 21 N 0.040 4.960 22 O -0.296 6.296 23 O -0.277 6.277 24 C -0.133 4.133 25 C -0.128 4.128 26 C 0.515 3.485 27 O -0.563 6.563 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.406 0.594 34 H 0.115 0.885 35 H 0.303 0.697 36 H 0.129 0.871 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 -6.798 -1.570 7.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.332 5.332 3 C -0.029 4.029 4 C 0.037 3.963 5 H 0.110 0.890 6 N -0.371 5.371 7 C 0.194 3.806 8 C -0.333 4.333 9 C 0.136 3.864 10 C -0.414 4.414 11 H 0.118 0.882 12 C -0.166 4.166 13 N -0.336 5.336 14 Si 0.748 3.252 15 H -0.184 1.184 16 H -0.191 1.191 17 H -0.173 1.173 18 C -0.193 4.193 19 C -0.055 4.055 20 C -0.266 4.266 21 N 0.478 4.522 22 O -0.457 6.457 23 O -0.446 6.446 24 C -0.171 4.171 25 C -0.168 4.168 26 C 0.304 3.696 27 O -0.443 6.443 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.245 0.755 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.675 -7.230 -1.820 8.312 hybrid contribution 0.116 0.531 0.066 0.547 sum -3.560 -6.699 -1.755 7.786 Atomic orbital electron populations 1.21792 0.79508 1.04415 1.01659 1.47141 1.07638 1.06050 1.72405 1.21990 0.93857 0.84126 1.02936 1.20925 0.89867 0.84684 1.00835 0.88956 1.44863 1.55131 1.14340 1.22719 1.17112 0.89841 0.84575 0.89108 1.20383 1.17379 1.02184 0.93329 1.17557 0.87114 0.90623 0.91130 1.21330 1.25348 0.94538 1.00151 0.88211 1.27792 0.92829 0.93797 1.02215 1.69098 1.21799 1.02742 1.39951 0.85964 0.80526 0.80078 0.78626 1.18365 1.19084 1.17262 1.21021 1.02872 0.99299 0.96075 1.19890 0.97426 0.96101 0.92080 1.19358 1.23045 0.98760 0.85479 1.50133 0.99831 0.98455 1.03830 1.96039 1.68770 1.57123 1.23791 1.96136 1.10629 1.41923 1.95933 1.21960 1.01121 0.92964 1.01070 1.21574 0.90932 0.99116 1.05149 1.20193 0.91022 0.82786 0.75630 1.90680 1.66425 1.35816 1.51332 0.89107 0.92197 0.91875 0.89485 0.91008 0.75470 0.86748 0.88380 0.85368 0.86916 0.90481 0.89675 0.87762 0.87881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 10.48 59.85 0.63 1.42 16 2 N -0.60 -7.77 3.21 -182.97 -0.59 -8.36 16 3 C 0.10 1.27 6.00 -4.58 -0.03 1.24 16 4 C 0.14 1.95 2.34 -67.89 -0.16 1.79 16 5 H 0.09 1.27 6.21 -51.93 -0.32 0.95 16 6 N -0.74 -12.56 5.01 -52.16 -0.26 -12.82 16 7 C 0.30 6.04 6.59 -83.84 -0.55 5.49 16 8 C -0.31 -6.08 9.02 -38.51 -0.35 -6.43 16 9 C 0.14 2.98 5.59 -106.82 -0.60 2.38 16 10 C -0.39 -7.77 9.30 -35.45 -0.33 -8.10 16 11 H 0.10 1.85 7.98 -52.48 -0.42 1.43 16 12 C 0.07 1.22 5.31 -15.19 -0.08 1.14 16 13 N -0.72 -13.97 11.16 55.98 0.62 -13.34 16 14 Si 0.93 13.71 29.67 -169.99 -5.04 8.67 16 15 H -0.26 -3.84 7.11 56.52 0.40 -3.43 16 16 H -0.27 -3.88 7.11 56.52 0.40 -3.48 16 17 H -0.25 -3.71 7.11 56.52 0.40 -3.31 16 18 C -0.17 -3.70 8.70 -39.03 -0.34 -4.04 16 19 C -0.03 -0.76 9.60 -40.05 -0.38 -1.15 16 20 C -0.17 -3.75 6.60 -79.32 -0.52 -4.27 16 21 N 0.04 0.96 4.77 34.27 0.16 1.12 16 22 O -0.30 -7.03 17.42 -31.56 -0.55 -7.58 16 23 O -0.28 -6.97 19.67 -31.57 -0.62 -7.59 16 24 C -0.13 -1.46 5.52 -26.51 -0.15 -1.61 16 25 C -0.13 -1.35 6.03 -28.10 -0.17 -1.51 16 26 C 0.51 7.05 7.47 -11.87 -0.09 6.96 16 27 O -0.56 -9.43 15.95 5.56 0.09 -9.34 16 28 H 0.09 1.12 6.59 -51.93 -0.34 0.78 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.24 8.10 -51.93 -0.42 0.81 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.41 7.30 6.11 -40.82 -0.25 7.05 16 34 H 0.11 2.06 6.11 -52.49 -0.32 1.74 16 35 H 0.30 5.16 8.27 -40.82 -0.34 4.82 16 36 H 0.13 2.74 6.30 -52.48 -0.33 2.41 16 37 H 0.11 2.38 8.01 -52.49 -0.42 1.96 16 38 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 347.38 15.07 5.23 5.23 Total: -1.00 -27.01 347.38 -8.99 -36.00 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -4.92 Total: 14.68 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -3.12 Total: -6.69 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: -0.06 Total: -33.40 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -1.08 Total: -24.50 kcal Atomic # 14 Polarization: 13.71 SS G_CDS: -5.04 Total: 8.67 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.01 -8.99 -36.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167250152.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.404 kcal (2) G-P(sol) polarization free energy of solvation -27.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds