Wall clock time and date at job start Tue Mar 31 2020 14:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.45749 * 117.94842 * 2 1 4 4 C 1.52737 * 110.59233 * 198.88915 * 3 2 1 5 5 H 1.09000 * 109.52797 * 69.41909 * 4 3 2 6 6 N 1.46502 * 109.66772 * 189.73548 * 4 3 2 7 7 C 1.39673 * 119.99975 * 274.40522 * 6 4 3 8 8 C 1.38176 * 119.98914 * 353.75033 * 7 6 4 9 9 C 1.41136 * 119.50500 * 179.97438 * 8 7 6 10 10 C 1.40349 * 120.25185 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00242 * 333.25267 * 10 9 8 12 12 C 1.46523 * 120.00038 * 153.26007 * 10 9 8 13 13 N 1.29512 * 120.00045 * 343.74262 * 12 10 9 14 14 Si 1.86805 * 120.00111 * 163.74306 * 12 10 9 15 15 H 1.48500 * 109.46920 * 89.99810 * 14 12 10 16 16 H 1.48503 * 109.47023 * 209.99945 * 14 12 10 17 17 H 1.48506 * 109.46907 * 329.99967 * 14 12 10 18 18 C 1.41339 * 119.49220 * 359.97438 * 9 8 7 19 19 C 1.36491 * 119.96484 * 359.97438 * 18 9 8 20 20 C 1.38667 * 120.50273 * 359.73038 * 19 18 9 21 21 N 1.48014 * 119.74418 * 180.29726 * 20 19 18 22 22 O 1.31695 * 120.00039 * 142.92151 * 21 20 19 23 23 O 1.31699 * 119.99808 * 322.91041 * 21 20 19 24 24 C 1.53344 * 108.82247 * 309.61726 * 4 3 2 25 25 C 1.53075 * 108.42392 * 67.36939 * 24 4 3 26 26 C 1.33360 * 117.94628 * 180.27045 * 2 1 3 27 27 O 1.21280 * 118.24404 * 357.74849 * 26 2 1 28 28 H 1.09004 * 109.46973 * 179.73075 * 1 2 3 29 29 H 1.08992 * 109.47171 * 299.73533 * 1 2 3 30 30 H 1.09007 * 109.46971 * 59.73617 * 1 2 3 31 31 H 1.08999 * 109.30601 * 319.39419 * 3 2 1 32 32 H 1.09001 * 109.29670 * 78.76495 * 3 2 1 33 33 H 0.96997 * 119.99799 * 94.39871 * 6 4 3 34 34 H 1.07994 * 120.24758 * 0.02562 * 8 7 6 35 35 H 0.96998 * 120.00040 * 180.02562 * 13 12 10 36 36 H 1.08003 * 120.01787 * 180.02562 * 18 9 8 37 37 H 1.07998 * 119.74999 * 180.02562 * 19 18 9 38 38 H 1.08999 * 109.67658 * 307.63100 * 24 4 3 39 39 H 1.08999 * 109.67092 * 187.09865 * 24 4 3 40 40 H 1.08997 * 109.39868 * 190.97430 * 25 24 4 41 41 H 1.08997 * 109.40490 * 71.22758 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5948 1.1280 -0.4629 5 1 3.6127 0.8810 -1.5244 6 7 4.3255 2.3776 -0.2368 7 6 4.2864 3.3927 -1.1954 8 6 3.6678 3.1713 -2.4109 9 6 3.6338 4.2043 -3.3719 10 6 3.0101 3.9963 -4.6119 11 1 2.9412 2.9992 -5.0213 12 6 2.4526 5.1319 -5.3512 13 7 2.2468 6.2592 -4.7478 14 14 2.0386 4.9536 -7.1641 15 1 0.6352 4.4902 -7.3080 16 1 2.1982 6.2664 -7.8396 17 1 2.9534 3.9626 -7.7856 18 6 4.2328 5.4499 -3.0761 19 6 4.8372 5.6458 -1.8681 20 6 4.8648 4.6323 -0.9222 21 7 5.5191 4.8653 0.3849 22 8 5.0050 4.3460 1.4805 23 8 6.6156 5.5916 0.4521 24 6 4.2492 -0.0030 0.3397 25 6 3.5838 -1.3238 -0.0548 26 6 2.0900 -1.1781 -0.0056 27 8 1.4158 -2.1856 0.0317 28 1 -0.3633 -1.0277 -0.0048 29 1 -0.3633 0.5097 0.8923 30 1 -0.3633 0.5180 -0.8877 31 1 1.6271 1.9719 -0.6695 32 1 2.1398 1.6996 1.0091 33 1 4.8362 2.5000 0.5787 34 1 3.2129 2.2152 -2.6237 35 1 1.8774 7.0109 -5.2371 36 1 4.2114 6.2464 -3.8051 37 1 5.2934 6.5991 -1.6455 38 1 4.1088 0.1747 1.4059 39 1 5.3142 -0.0461 0.1115 40 1 3.8942 -2.1065 0.6374 41 1 3.8880 -1.5948 -1.0658 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167250152.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:39 Heat of formation + Delta-G solvation = -16.002021 kcal Electronic energy + Delta-G solvation = -26938.066479 eV Core-core repulsion = 23013.767943 eV Total energy + Delta-G solvation = -3924.298536 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.67816 -40.56740 -38.73779 -38.18579 -36.38027 -35.60870 -34.85618 -34.12104 -32.53227 -30.74252 -29.06487 -28.67508 -27.81382 -25.61621 -25.13820 -23.80234 -22.64995 -22.04236 -20.02481 -19.63447 -18.93981 -18.60585 -17.88256 -17.63738 -17.43588 -17.20869 -16.84084 -16.39745 -15.77498 -15.43659 -15.38362 -15.10170 -14.86077 -14.50312 -14.25691 -14.11830 -13.96381 -13.58867 -13.40625 -13.21185 -12.97603 -12.95227 -12.88873 -12.64438 -12.38831 -12.04700 -11.92755 -11.87977 -11.76961 -11.55533 -11.44064 -11.38095 -11.01322 -10.75070 -9.99318 -9.81247 -9.18504 -8.57520 -6.79451 -1.09423 0.71357 0.97292 1.05150 1.39994 1.50059 1.54153 1.59702 1.87339 2.07708 2.32953 2.41969 3.29060 3.51270 3.59086 3.65998 3.88189 3.98996 4.17960 4.33804 4.43163 4.46119 4.52564 4.55451 4.57426 4.63055 4.68360 4.81625 4.84485 4.87328 4.90448 5.00052 5.03050 5.11227 5.30861 5.42406 5.57874 5.66425 5.69521 6.00573 6.23049 6.35457 6.36533 6.39049 6.61683 6.67239 7.04814 7.71370 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.009292 B = 0.004899 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.706233 B = 5714.594793 C = 8081.700354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.599 5.599 3 C 0.104 3.896 4 C 0.141 3.859 5 H 0.098 0.902 6 N -0.728 5.728 7 C 0.293 3.707 8 C -0.302 4.302 9 C 0.102 3.898 10 C -0.361 4.361 11 H 0.122 0.878 12 C 0.031 3.969 13 N -0.733 5.733 14 Si 0.999 3.001 15 H -0.254 1.254 16 H -0.262 1.262 17 H -0.246 1.246 18 C -0.157 4.157 19 C -0.059 4.059 20 C -0.169 4.169 21 N 0.045 4.955 22 O -0.325 6.325 23 O -0.355 6.355 24 C -0.124 4.124 25 C -0.118 4.118 26 C 0.509 3.491 27 O -0.597 6.597 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.401 0.599 34 H 0.137 0.863 35 H 0.319 0.681 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.121 0.879 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 -8.270 -4.870 10.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.331 5.331 3 C -0.020 4.020 4 C 0.035 3.965 5 H 0.116 0.884 6 N -0.361 5.361 7 C 0.186 3.814 8 C -0.328 4.328 9 C 0.097 3.903 10 C -0.386 4.386 11 H 0.140 0.860 12 C -0.200 4.200 13 N -0.352 5.352 14 Si 0.816 3.184 15 H -0.178 1.178 16 H -0.186 1.186 17 H -0.169 1.169 18 C -0.179 4.179 19 C -0.080 4.080 20 C -0.275 4.275 21 N 0.461 4.539 22 O -0.478 6.478 23 O -0.504 6.504 24 C -0.162 4.162 25 C -0.158 4.158 26 C 0.299 3.701 27 O -0.479 6.479 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.240 0.760 34 H 0.154 0.846 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.139 0.861 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.277 -8.637 -4.944 11.264 hybrid contribution 0.269 0.966 0.583 1.159 sum -5.009 -7.671 -4.361 10.147 Atomic orbital electron populations 1.21881 0.78842 1.04137 1.02807 1.47202 1.08238 1.05789 1.71854 1.21819 0.93654 0.84087 1.02476 1.21140 0.89838 0.83841 1.01658 0.88441 1.44988 1.54647 1.14701 1.21750 1.17220 0.89650 0.84507 0.90017 1.20505 1.17012 1.02627 0.92702 1.17874 0.89001 0.90945 0.92458 1.21994 1.21293 0.96313 0.98974 0.86015 1.28699 0.92288 0.92948 1.06077 1.69093 1.20368 1.03562 1.42158 0.84895 0.80360 0.80229 0.72878 1.17802 1.18614 1.16872 1.21122 1.01905 0.99443 0.95435 1.19952 0.98972 0.96306 0.92746 1.19774 1.22738 0.99901 0.85118 1.50137 1.00129 0.99550 1.04049 1.95974 1.69123 1.58326 1.24364 1.96095 1.12463 1.45623 1.96172 1.21908 1.01576 0.92066 1.00697 1.21589 0.88470 0.99081 1.06673 1.20757 0.92224 0.82294 0.74810 1.90670 1.67415 1.36796 1.53055 0.90022 0.91015 0.90819 0.90178 0.91460 0.76021 0.84583 0.86770 0.85377 0.87359 0.90380 0.88524 0.86094 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.42 10.48 127.77 1.34 2.76 16 2 N -0.60 -14.55 3.21 -851.98 -2.74 -17.28 16 3 C 0.10 2.62 6.00 86.43 0.52 3.14 16 4 C 0.14 3.56 2.34 45.02 0.11 3.67 16 5 H 0.10 2.40 6.21 -2.39 -0.01 2.39 16 6 N -0.73 -24.54 5.01 -318.94 -1.60 -26.14 16 7 C 0.29 11.79 6.59 38.18 0.25 12.04 16 8 C -0.30 -11.40 9.02 22.97 0.21 -11.19 16 9 C 0.10 4.13 5.59 -21.29 -0.12 4.01 16 10 C -0.36 -13.07 9.30 24.95 0.23 -12.84 16 11 H 0.12 3.89 7.98 -2.91 -0.02 3.86 16 12 C 0.03 1.03 5.31 87.20 0.46 1.49 16 13 N -0.73 -26.40 11.16 23.21 0.26 -26.15 16 14 Si 1.00 24.17 29.67 68.60 2.04 26.20 16 15 H -0.25 -6.01 7.11 99.48 0.71 -5.31 16 16 H -0.26 -6.20 7.11 99.48 0.71 -5.49 16 17 H -0.25 -5.85 7.11 99.48 0.71 -5.14 16 18 C -0.16 -6.71 8.70 22.62 0.20 -6.51 16 19 C -0.06 -2.70 9.60 21.96 0.21 -2.49 16 20 C -0.17 -7.90 6.60 36.78 0.24 -7.66 16 21 N 0.05 2.31 4.77 -45.50 -0.22 2.09 16 22 O -0.33 -16.33 17.42 3.52 0.06 -16.27 16 23 O -0.36 -19.43 19.67 3.52 0.07 -19.36 16 24 C -0.12 -2.47 5.52 30.73 0.17 -2.30 16 25 C -0.12 -2.18 6.03 29.71 0.18 -2.00 16 26 C 0.51 13.00 7.47 87.71 0.66 13.66 16 27 O -0.60 -19.26 15.95 -3.03 -0.05 -19.31 16 28 H 0.08 1.95 6.59 -2.38 -0.02 1.93 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.08 2.14 8.10 -2.39 -0.02 2.12 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.40 14.63 6.11 -92.71 -0.57 14.07 16 34 H 0.14 4.46 6.11 -2.91 -0.02 4.44 16 35 H 0.32 9.84 8.27 -92.71 -0.77 9.08 16 36 H 0.13 5.36 6.30 -2.91 -0.02 5.34 16 37 H 0.11 4.87 8.01 -2.91 -0.02 4.84 16 38 H 0.08 1.57 8.13 -2.39 -0.02 1.55 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -59.78 347.38 3.00 -56.78 By element: Atomic # 1 Polarization: 43.12 SS G_CDS: 0.52 Total: 43.64 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 4.65 Total: -4.22 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: -4.29 Total: -67.47 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: 0.08 Total: -54.94 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: 2.04 Total: 26.20 kcal Total: -59.78 3.00 -56.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167250152.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.782 kcal (2) G-P(sol) polarization free energy of solvation -59.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds