Wall clock time and date at job start Tue Mar 31 2020 14:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46763 * 124.35011 * 2 1 4 4 C 1.54479 * 105.47292 * 196.99800 * 3 2 1 5 5 H 1.08998 * 110.96992 * 92.74060 * 4 3 2 6 6 C 1.52994 * 110.96885 * 216.46523 * 4 3 2 7 7 N 1.46498 * 109.47422 * 181.90964 * 6 4 3 8 8 C 1.37653 * 120.00610 * 180.02562 * 7 6 4 9 9 C 1.40189 * 119.81065 * 359.72341 * 8 7 6 10 10 C 1.35796 * 120.19024 * 179.71828 * 9 8 7 11 11 C 1.41744 * 119.80623 * 0.55526 * 10 9 8 12 12 C 1.39521 * 120.18407 * 179.69763 * 11 10 9 13 13 H 1.08000 * 119.99588 * 144.17476 * 12 11 10 14 14 C 1.46586 * 119.99917 * 324.16716 * 12 11 10 15 15 N 1.29493 * 119.99710 * 170.71401 * 14 12 11 16 16 Si 1.86793 * 120.00288 * 350.71297 * 14 12 11 17 17 H 1.48505 * 109.47418 * 88.56516 * 16 14 12 18 18 H 1.48499 * 109.47382 * 208.56610 * 16 14 12 19 19 H 1.48503 * 109.47340 * 328.56196 * 16 14 12 20 20 C 1.41714 * 119.63067 * 359.72383 * 11 10 9 21 21 N 1.48016 * 120.09832 * 179.97438 * 20 11 10 22 22 O 1.31700 * 119.99931 * 173.84463 * 21 20 11 23 23 O 1.31695 * 120.00099 * 353.83861 * 21 20 11 24 24 C 1.35834 * 119.80658 * 359.97438 * 20 11 10 25 25 C 1.54632 * 101.79618 * 334.60238 * 4 3 2 26 26 C 1.34416 * 124.34492 * 179.97438 * 2 1 3 27 27 O 1.21281 * 124.94678 * 359.62946 * 26 2 1 28 28 H 1.09007 * 109.47572 * 89.99768 * 1 2 3 29 29 H 1.09001 * 109.47346 * 210.00372 * 1 2 3 30 30 H 1.09003 * 109.47053 * 329.99698 * 1 2 3 31 31 H 1.08998 * 110.24373 * 77.99662 * 3 2 1 32 32 H 1.08999 * 110.31933 * 316.03554 * 3 2 1 33 33 H 1.09005 * 109.47333 * 61.91301 * 6 4 3 34 34 H 1.08999 * 109.47237 * 301.91118 * 6 4 3 35 35 H 0.97004 * 119.99901 * 359.72120 * 7 6 4 36 36 H 1.08002 * 119.89955 * 0.02562 * 9 8 7 37 37 H 1.08002 * 120.09414 * 180.25464 * 10 9 8 38 38 H 0.97003 * 119.99532 * 180.02562 * 15 14 12 39 39 H 1.07997 * 119.91042 * 180.02562 * 24 20 11 40 40 H 1.09001 * 110.48450 * 143.46249 * 25 4 3 41 41 H 1.09004 * 110.48655 * 266.09901 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7011 0.7486 -0.4352 5 1 3.8275 0.8451 -1.5136 6 6 4.7878 1.5240 0.3121 7 7 6.1066 1.0920 -0.1575 8 6 7.2449 1.6537 0.3749 9 6 7.1376 2.6431 1.3623 10 6 8.2556 3.1984 1.8970 11 6 9.5335 2.7833 1.4455 12 6 10.6872 3.3530 1.9848 13 1 11.5706 2.7489 2.1301 14 6 10.7004 4.7715 2.3541 15 7 11.7006 5.2588 3.0167 16 14 9.2745 5.8763 1.8689 17 1 8.2336 5.8349 2.9274 18 1 9.7608 7.2701 1.7073 19 1 8.6952 5.4024 0.5862 20 6 9.6327 1.7868 0.4428 21 7 10.9618 1.3460 -0.0368 22 8 11.0571 0.3373 -0.8782 23 8 12.0492 1.9625 0.3779 24 6 8.5044 1.2373 -0.0770 25 6 3.6904 -0.7381 -0.0101 26 6 2.2233 -1.1098 0.0005 27 8 1.7945 -2.2443 0.0074 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 2.3303 1.6431 1.0003 32 1 1.8993 1.9393 -0.7096 33 1 4.7019 1.3308 1.3815 34 1 4.6670 2.5909 0.1247 35 1 6.1777 0.4069 -0.8406 36 1 6.1630 2.9610 1.7023 37 1 8.1712 3.9575 2.6605 38 1 11.7091 6.1974 3.2614 39 1 8.5781 0.4774 -0.8409 40 1 4.2334 -1.3458 -0.7339 41 1 4.1202 -0.8535 0.9850 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168727105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:56 Heat of formation + Delta-G solvation = 11.587014 kcal Electronic energy + Delta-G solvation = -25980.158348 eV Core-core repulsion = 22057.056162 eV Total energy + Delta-G solvation = -3923.102186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.77146 -39.02270 -37.33566 -36.56536 -35.49083 -34.21716 -32.98129 -32.43722 -30.67645 -30.05681 -28.42584 -27.40630 -26.01778 -24.49927 -23.87042 -22.11326 -21.18432 -20.16029 -19.80583 -18.33892 -17.38575 -17.18105 -16.79318 -16.29284 -15.79317 -15.69771 -15.19094 -15.02149 -14.83852 -14.29288 -14.14081 -14.01864 -13.81233 -13.50794 -13.35964 -13.19141 -12.90066 -12.75433 -12.68799 -12.37657 -12.19306 -11.64948 -11.54137 -11.44289 -11.25750 -10.92390 -10.87537 -10.39712 -10.07170 -9.94954 -9.47339 -9.35970 -9.10899 -9.04273 -8.93761 -8.49945 -7.70220 -7.14533 -4.85955 0.87946 2.24786 2.30080 2.56530 2.63315 2.64962 2.82174 2.85320 3.11925 3.41478 3.69619 3.88531 3.97457 4.17278 4.38970 4.61928 4.72130 4.82688 4.94928 4.99962 5.07544 5.22524 5.31751 5.35977 5.46554 5.47008 5.54246 5.61474 5.78102 5.91279 6.11022 6.12684 6.22722 6.44400 6.64759 6.72077 6.84341 7.03324 7.17550 7.40070 7.67797 7.81745 7.85761 7.99797 8.12879 8.23814 8.81498 9.18355 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.003058 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.629655 B = 9155.439066 C =10459.844370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.627 5.627 3 C 0.111 3.889 4 C -0.111 4.111 5 H 0.098 0.902 6 C 0.145 3.855 7 N -0.749 5.749 8 C 0.105 3.895 9 C -0.107 4.107 10 C -0.158 4.158 11 C 0.045 3.955 12 C -0.300 4.300 13 H 0.134 0.866 14 C 0.061 3.939 15 N -0.712 5.712 16 Si 0.922 3.078 17 H -0.255 1.255 18 H -0.275 1.275 19 H -0.234 1.234 20 C -0.062 4.062 21 N 0.034 4.966 22 O -0.361 6.361 23 O -0.276 6.276 24 C -0.104 4.104 25 C -0.150 4.150 26 C 0.517 3.483 27 O -0.534 6.534 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.394 0.606 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.307 0.693 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.955 2.719 -0.606 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.362 5.362 3 C -0.013 4.013 4 C -0.130 4.130 5 H 0.117 0.883 6 C 0.019 3.981 7 N -0.385 5.385 8 C 0.004 3.996 9 C -0.128 4.128 10 C -0.178 4.178 11 C 0.039 3.961 12 C -0.328 4.328 13 H 0.151 0.849 14 C -0.172 4.172 15 N -0.332 5.332 16 Si 0.745 3.255 17 H -0.180 1.180 18 H -0.201 1.201 19 H -0.157 1.157 20 C -0.165 4.165 21 N 0.450 4.550 22 O -0.502 6.502 23 O -0.435 6.435 24 C -0.130 4.130 25 C -0.190 4.190 26 C 0.305 3.695 27 O -0.411 6.411 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.228 0.772 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.120 0.880 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -21.421 2.331 -0.391 21.551 hybrid contribution -0.060 0.238 -0.432 0.497 sum -21.482 2.570 -0.823 21.651 Atomic orbital electron populations 1.21541 0.78036 1.03162 1.01903 1.48189 1.06535 1.07447 1.74012 1.22059 0.89618 0.87205 1.02410 1.22367 0.94054 0.94579 1.02036 0.88347 1.21081 0.81877 0.97704 0.97415 1.43463 1.01745 1.46535 1.46775 1.16916 0.85372 0.98510 0.98832 1.20360 0.98027 0.97393 0.97053 1.20881 0.91554 1.03254 1.02102 1.17142 0.93294 0.93718 0.91935 1.21986 0.99927 0.93047 1.17800 0.84883 1.28195 0.97743 0.99707 0.91539 1.68931 1.28288 1.17645 1.18348 0.86134 0.79497 0.77421 0.82468 1.18034 1.20140 1.15696 1.19219 0.79762 1.11254 1.06273 1.49636 1.03560 1.00666 1.01104 1.96059 1.95713 1.21392 1.37004 1.96087 1.24808 1.56542 1.66071 1.19448 0.89349 1.02143 1.02011 1.22472 0.94143 0.96881 1.05525 1.21030 0.89452 0.84230 0.74795 1.90728 1.78805 1.21214 1.50311 0.92576 0.90689 0.90944 0.90455 0.89910 0.92368 0.92185 0.77209 0.86933 0.86179 0.87986 0.86131 0.87730 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 10.96 59.85 0.66 1.26 16 2 N -0.63 -5.15 3.33 -180.26 -0.60 -5.75 16 3 C 0.11 0.63 6.91 -3.12 -0.02 0.61 16 4 C -0.11 -0.75 3.18 -88.99 -0.28 -1.04 16 5 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 6 C 0.14 1.24 4.16 -4.05 -0.02 1.23 16 7 N -0.75 -9.15 5.54 -58.49 -0.32 -9.47 16 8 C 0.10 1.76 6.67 -83.80 -0.56 1.21 16 9 C -0.11 -1.77 9.21 -39.72 -0.37 -2.13 16 10 C -0.16 -3.03 7.12 -39.12 -0.28 -3.31 16 11 C 0.04 1.03 5.11 -106.75 -0.55 0.49 16 12 C -0.30 -7.33 8.37 -35.74 -0.30 -7.63 16 13 H 0.13 3.66 6.04 -52.49 -0.32 3.34 16 14 C 0.06 1.33 5.65 -15.17 -0.09 1.24 16 15 N -0.71 -15.53 13.89 55.99 0.78 -14.76 16 16 Si 0.92 16.31 24.62 -169.99 -4.19 12.13 16 17 H -0.26 -4.05 6.64 56.52 0.38 -3.68 16 18 H -0.28 -4.66 7.11 56.52 0.40 -4.26 16 19 H -0.23 -4.36 6.90 56.52 0.39 -3.97 16 20 C -0.06 -1.52 6.89 -79.48 -0.55 -2.06 16 21 N 0.03 0.96 4.98 34.19 0.17 1.13 16 22 O -0.36 -10.35 19.14 -31.57 -0.60 -10.95 16 23 O -0.28 -8.12 16.28 -31.56 -0.51 -8.63 16 24 C -0.10 -2.16 9.35 -39.73 -0.37 -2.54 16 25 C -0.15 -1.29 6.27 -26.71 -0.17 -1.45 16 26 C 0.52 5.71 8.02 -10.83 -0.09 5.62 16 27 O -0.53 -8.16 17.59 5.56 0.10 -8.06 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.56 7.92 -51.93 -0.41 0.15 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.37 7.89 -51.93 -0.41 -0.04 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.50 7.79 -51.93 -0.40 0.10 16 34 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 35 H 0.39 4.41 8.41 -40.82 -0.34 4.06 16 36 H 0.11 1.45 6.66 -52.49 -0.35 1.10 16 37 H 0.12 2.11 4.85 -52.49 -0.25 1.85 16 38 H 0.31 5.72 8.27 -40.82 -0.34 5.39 16 39 H 0.12 2.45 7.55 -52.49 -0.40 2.06 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.11 0.96 7.81 -51.93 -0.41 0.56 16 LS Contribution 345.68 15.07 5.21 5.21 Total: -1.00 -32.61 345.68 -7.93 -40.54 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -4.99 Total: 7.10 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.97 Total: -8.49 kcal Atomic # 7 Polarization: -28.86 SS G_CDS: 0.02 Total: -28.84 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -1.02 Total: -27.64 kcal Atomic # 14 Polarization: 16.31 SS G_CDS: -4.19 Total: 12.13 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.61 -7.93 -40.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168727105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.131 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds