Wall clock time and date at job start Tue Mar 31 2020 14:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46763 * 124.35011 * 2 1 4 4 C 1.54479 * 105.47292 * 196.99800 * 3 2 1 5 5 H 1.08998 * 110.96992 * 92.74060 * 4 3 2 6 6 C 1.52994 * 110.96885 * 216.46523 * 4 3 2 7 7 N 1.46498 * 109.47422 * 181.90964 * 6 4 3 8 8 C 1.37653 * 120.00610 * 180.02562 * 7 6 4 9 9 C 1.40189 * 119.81065 * 359.72341 * 8 7 6 10 10 C 1.35796 * 120.19024 * 179.71828 * 9 8 7 11 11 C 1.41744 * 119.80623 * 0.55526 * 10 9 8 12 12 C 1.39521 * 120.18407 * 179.69763 * 11 10 9 13 13 H 1.08000 * 119.99588 * 144.17476 * 12 11 10 14 14 C 1.46586 * 119.99917 * 324.16716 * 12 11 10 15 15 N 1.29493 * 119.99710 * 170.71401 * 14 12 11 16 16 Si 1.86793 * 120.00288 * 350.71297 * 14 12 11 17 17 H 1.48505 * 109.47418 * 88.56516 * 16 14 12 18 18 H 1.48499 * 109.47382 * 208.56610 * 16 14 12 19 19 H 1.48503 * 109.47340 * 328.56196 * 16 14 12 20 20 C 1.41714 * 119.63067 * 359.72383 * 11 10 9 21 21 N 1.48016 * 120.09832 * 179.97438 * 20 11 10 22 22 O 1.31700 * 119.99931 * 173.84463 * 21 20 11 23 23 O 1.31695 * 120.00099 * 353.83861 * 21 20 11 24 24 C 1.35834 * 119.80658 * 359.97438 * 20 11 10 25 25 C 1.54632 * 101.79618 * 334.60238 * 4 3 2 26 26 C 1.34416 * 124.34492 * 179.97438 * 2 1 3 27 27 O 1.21281 * 124.94678 * 359.62946 * 26 2 1 28 28 H 1.09007 * 109.47572 * 89.99768 * 1 2 3 29 29 H 1.09001 * 109.47346 * 210.00372 * 1 2 3 30 30 H 1.09003 * 109.47053 * 329.99698 * 1 2 3 31 31 H 1.08998 * 110.24373 * 77.99662 * 3 2 1 32 32 H 1.08999 * 110.31933 * 316.03554 * 3 2 1 33 33 H 1.09005 * 109.47333 * 61.91301 * 6 4 3 34 34 H 1.08999 * 109.47237 * 301.91118 * 6 4 3 35 35 H 0.97004 * 119.99901 * 359.72120 * 7 6 4 36 36 H 1.08002 * 119.89955 * 0.02562 * 9 8 7 37 37 H 1.08002 * 120.09414 * 180.25464 * 10 9 8 38 38 H 0.97003 * 119.99532 * 180.02562 * 15 14 12 39 39 H 1.07997 * 119.91042 * 180.02562 * 24 20 11 40 40 H 1.09001 * 110.48450 * 143.46249 * 25 4 3 41 41 H 1.09004 * 110.48655 * 266.09901 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7011 0.7486 -0.4352 5 1 3.8275 0.8451 -1.5136 6 6 4.7878 1.5240 0.3121 7 7 6.1066 1.0920 -0.1575 8 6 7.2449 1.6537 0.3749 9 6 7.1376 2.6431 1.3623 10 6 8.2556 3.1984 1.8970 11 6 9.5335 2.7833 1.4455 12 6 10.6872 3.3530 1.9848 13 1 11.5706 2.7489 2.1301 14 6 10.7004 4.7715 2.3541 15 7 11.7006 5.2588 3.0167 16 14 9.2745 5.8763 1.8689 17 1 8.2336 5.8349 2.9274 18 1 9.7608 7.2701 1.7073 19 1 8.6952 5.4024 0.5862 20 6 9.6327 1.7868 0.4428 21 7 10.9618 1.3460 -0.0368 22 8 11.0571 0.3373 -0.8782 23 8 12.0492 1.9625 0.3779 24 6 8.5044 1.2373 -0.0770 25 6 3.6904 -0.7381 -0.0101 26 6 2.2233 -1.1098 0.0005 27 8 1.7945 -2.2443 0.0074 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 2.3303 1.6431 1.0003 32 1 1.8993 1.9393 -0.7096 33 1 4.7019 1.3308 1.3815 34 1 4.6670 2.5909 0.1247 35 1 6.1777 0.4069 -0.8406 36 1 6.1630 2.9610 1.7023 37 1 8.1712 3.9575 2.6605 38 1 11.7091 6.1974 3.2614 39 1 8.5781 0.4774 -0.8409 40 1 4.2334 -1.3458 -0.7339 41 1 4.1202 -0.8535 0.9850 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168727105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:55 Heat of formation + Delta-G solvation = -13.578187 kcal Electronic energy + Delta-G solvation = -25981.249593 eV Core-core repulsion = 22057.056162 eV Total energy + Delta-G solvation = -3924.193431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47636 -40.55598 -38.50727 -37.78033 -36.85241 -35.75395 -34.24768 -33.84787 -32.21024 -31.50237 -29.31812 -28.15100 -27.26595 -25.78778 -25.21210 -23.66395 -22.09797 -21.38326 -20.58528 -20.13842 -18.74794 -18.12650 -17.80206 -17.45879 -17.38274 -16.56158 -16.35281 -16.20265 -15.94911 -15.73290 -15.57453 -15.16585 -14.67799 -14.65956 -14.47661 -14.34456 -14.09776 -13.82913 -13.32779 -13.26411 -13.11328 -12.97852 -12.75939 -12.67626 -12.38581 -12.12227 -11.93086 -11.82568 -11.38148 -11.16163 -10.98484 -10.94573 -10.83951 -10.64037 -10.09945 -9.70764 -9.47394 -8.59679 -6.70667 -1.02251 0.68447 0.96006 1.20517 1.41683 1.51490 1.53947 1.60286 1.97253 2.07275 2.25841 2.68234 3.02562 3.33977 3.54872 3.77108 3.93150 4.07616 4.14873 4.23467 4.36450 4.44322 4.49536 4.52412 4.65210 4.66703 4.74888 4.78413 4.85528 4.88152 4.93351 5.02070 5.10205 5.25248 5.29013 5.39806 5.42400 5.57236 5.69450 5.92199 6.02441 6.08101 6.34436 6.63680 6.91429 7.11571 7.12363 7.45365 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.003058 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.629655 B = 9155.439066 C =10459.844370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.623 5.623 3 C 0.111 3.889 4 C -0.098 4.098 5 H 0.106 0.894 6 C 0.131 3.869 7 N -0.730 5.730 8 C 0.194 3.806 9 C -0.101 4.101 10 C -0.127 4.127 11 C 0.000 4.000 12 C -0.244 4.244 13 H 0.084 0.916 14 C 0.013 3.987 15 N -0.716 5.716 16 Si 0.978 3.022 17 H -0.192 1.192 18 H -0.258 1.258 19 H -0.243 1.243 20 C -0.026 4.026 21 N 0.016 4.984 22 O -0.492 6.492 23 O -0.428 6.428 24 C -0.199 4.199 25 C -0.151 4.151 26 C 0.503 3.497 27 O -0.592 6.592 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.402 0.598 36 H 0.183 0.817 37 H 0.158 0.842 38 H 0.333 0.667 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.390 8.626 2.487 29.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.356 5.356 3 C -0.011 4.011 4 C -0.118 4.118 5 H 0.124 0.876 6 C 0.008 3.992 7 N -0.362 5.362 8 C 0.085 3.915 9 C -0.121 4.121 10 C -0.147 4.147 11 C -0.006 4.006 12 C -0.275 4.275 13 H 0.102 0.898 14 C -0.218 4.218 15 N -0.337 5.337 16 Si 0.792 3.208 17 H -0.114 1.114 18 H -0.183 1.183 19 H -0.166 1.166 20 C -0.141 4.141 21 N 0.377 4.623 22 O -0.599 6.599 23 O -0.546 6.546 24 C -0.227 4.227 25 C -0.191 4.191 26 C 0.293 3.707 27 O -0.473 6.473 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.236 0.764 36 H 0.200 0.800 37 H 0.175 0.825 38 H 0.148 0.852 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -28.537 8.112 2.569 29.778 hybrid contribution 1.536 -1.008 -0.797 2.003 sum -27.000 7.104 1.772 27.975 Atomic orbital electron populations 1.21702 0.77128 1.03827 1.02555 1.48382 1.07412 1.07621 1.72161 1.22296 0.88022 0.86257 1.04555 1.22279 0.94553 0.92539 1.02385 0.87584 1.21559 0.79256 0.99672 0.98707 1.43970 1.02331 1.44795 1.45109 1.17242 0.85079 0.94530 0.94621 1.21031 1.00175 0.95619 0.95280 1.21291 0.89631 1.02367 1.01396 1.17580 0.95147 0.95083 0.92765 1.22508 0.98880 0.94583 1.11560 0.89794 1.29408 1.01518 0.99133 0.91778 1.68873 1.28851 1.19893 1.16122 0.85409 0.76704 0.75434 0.83247 1.11438 1.18260 1.16580 1.19946 0.79740 1.09091 1.05301 1.49487 1.03657 1.03383 1.05773 1.95896 1.96028 1.25278 1.42727 1.95924 1.27116 1.59990 1.71576 1.19331 0.90173 1.06779 1.06379 1.22487 0.92498 0.98534 1.05555 1.21499 0.90789 0.84102 0.74350 1.90696 1.79857 1.23580 1.53175 0.91981 0.92564 0.87753 0.88099 0.87260 0.90193 0.88809 0.76373 0.80005 0.82481 0.85202 0.87771 0.88348 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 10.96 127.77 1.40 2.22 16 2 N -0.62 -7.58 3.33 -842.81 -2.81 -10.39 16 3 C 0.11 0.47 6.91 86.83 0.60 1.07 16 4 C -0.10 -0.70 3.18 -9.74 -0.03 -0.73 16 5 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 6 C 0.13 1.10 4.16 86.38 0.36 1.46 16 7 N -0.73 -13.46 5.54 -338.96 -1.88 -15.34 16 8 C 0.19 5.58 6.67 39.17 0.26 5.84 16 9 C -0.10 -2.44 9.21 22.18 0.20 -2.24 16 10 C -0.13 -4.00 7.12 22.57 0.16 -3.84 16 11 C 0.00 0.00 5.11 -21.25 -0.11 -0.11 16 12 C -0.24 -12.21 8.37 24.76 0.21 -12.00 16 13 H 0.08 5.10 6.04 -2.91 -0.02 5.08 16 14 C 0.01 0.52 5.65 87.22 0.49 1.01 16 15 N -0.72 -29.52 13.89 23.22 0.32 -29.19 16 16 Si 0.98 26.85 24.62 68.60 1.69 28.54 16 17 H -0.19 -3.64 6.64 99.48 0.66 -2.98 16 18 H -0.26 -6.59 7.11 99.48 0.71 -5.88 16 19 H -0.24 -7.20 6.90 99.48 0.69 -6.51 16 20 C -0.03 -1.37 6.89 36.68 0.25 -1.12 16 21 N 0.02 1.02 4.98 -45.75 -0.23 0.79 16 22 O -0.49 -34.18 19.14 3.51 0.07 -34.11 16 23 O -0.43 -30.02 16.28 3.52 0.06 -29.97 16 24 C -0.20 -8.54 9.35 22.17 0.21 -8.34 16 25 C -0.15 -2.05 6.27 30.61 0.19 -1.86 16 26 C 0.50 10.00 8.02 87.92 0.71 10.70 16 27 O -0.59 -18.04 17.59 -3.03 -0.05 -18.10 16 28 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.06 0.74 7.92 -2.39 -0.02 0.72 16 30 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.10 0.07 7.89 -2.39 -0.02 0.05 16 32 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.08 0.53 7.79 -2.38 -0.02 0.51 16 34 H 0.09 0.43 7.90 -2.39 -0.02 0.41 16 35 H 0.40 7.38 8.41 -92.71 -0.78 6.60 16 36 H 0.18 2.21 6.66 -2.91 -0.02 2.19 16 37 H 0.16 3.88 4.85 -2.91 -0.01 3.87 16 38 H 0.33 11.05 8.27 -92.71 -0.77 10.28 16 39 H 0.10 4.74 7.55 -2.91 -0.02 4.72 16 40 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.11 1.50 7.81 -2.39 -0.02 1.48 16 Total: -1.00 -94.55 345.68 2.31 -92.24 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.24 Total: 23.45 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 4.90 Total: -7.93 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -4.59 Total: -54.12 kcal Atomic # 8 Polarization: -82.25 SS G_CDS: 0.07 Total: -82.17 kcal Atomic # 14 Polarization: 26.85 SS G_CDS: 1.69 Total: 28.54 kcal Total: -94.55 2.31 -92.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168727105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.661 kcal (2) G-P(sol) polarization free energy of solvation -94.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds