Wall clock time and date at job start Tue Mar 31 2020 12:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47032 * 2 1 4 4 C 1.53007 * 109.47369 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47118 * 179.97438 * 4 3 2 6 6 C 1.36744 * 120.00141 * 269.99809 * 5 4 3 7 7 H 1.08007 * 119.99963 * 136.45195 * 6 5 4 8 8 C 1.39098 * 120.00354 * 316.45220 * 6 5 4 9 9 N 1.31328 * 120.00051 * 351.61097 * 8 6 5 10 10 Si 1.86807 * 120.00150 * 171.61823 * 8 6 5 11 11 H 1.48503 * 109.47105 * 59.99770 * 10 8 6 12 12 H 1.48499 * 109.46963 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47109 * 299.99695 * 10 8 6 14 14 C 1.34783 * 119.99775 * 90.00797 * 5 4 3 15 15 O 1.21663 * 120.00020 * 5.36831 * 14 5 4 16 16 C 1.47218 * 119.99741 * 185.37468 * 14 5 4 17 17 N 1.31694 * 125.86096 * 356.01478 * 16 14 5 18 18 C 1.33093 * 109.21402 * 180.13678 * 17 16 14 19 19 C 1.35574 * 108.40536 * 359.55818 * 18 17 16 20 20 N 1.36019 * 107.08107 * 0.26533 * 19 18 17 21 21 C 1.46492 * 126.49364 * 180.02562 * 20 19 18 22 22 C 1.53007 * 109.47095 * 265.02058 * 21 20 19 23 23 F 1.39909 * 109.46805 * 59.99784 * 22 21 20 24 24 F 1.39905 * 109.47532 * 179.97438 * 22 21 20 25 25 F 1.39895 * 109.47503 * 300.00090 * 22 21 20 26 26 H 1.09007 * 109.47236 * 299.99878 * 1 2 3 27 27 H 1.08995 * 109.47753 * 59.99731 * 1 2 3 28 28 H 1.09001 * 109.46962 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47554 * 240.00187 * 2 1 3 30 30 H 1.09000 * 109.47841 * 119.99780 * 2 1 3 31 31 H 1.09001 * 109.47076 * 60.00443 * 3 2 1 32 32 H 1.08999 * 109.47394 * 300.00004 * 3 2 1 33 33 H 1.09001 * 109.46647 * 60.00195 * 4 3 2 34 34 H 1.08999 * 109.46878 * 300.00335 * 4 3 2 35 35 H 0.97003 * 120.00415 * 185.00153 * 9 8 6 36 36 H 1.08001 * 125.79161 * 179.82228 * 18 17 16 37 37 H 1.07999 * 126.45601 * 180.28626 * 19 18 17 38 38 H 1.09000 * 109.47287 * 25.01799 * 21 20 19 39 39 H 1.08998 * 109.47459 * 145.02571 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2866 3.4677 -1.1845 7 1 3.9648 4.4906 -1.3139 8 6 4.9335 2.8056 -2.2227 9 7 5.4703 1.6251 -2.0151 10 14 5.0388 3.5954 -3.9123 11 1 5.7582 4.8904 -3.8094 12 1 5.7735 2.6935 -4.8354 13 1 3.6689 3.8304 -4.4351 14 6 4.2825 3.4598 1.1670 15 8 4.1737 2.8577 2.2186 16 6 4.6589 4.8830 1.1691 17 7 4.8804 5.6240 0.1032 18 6 5.2007 6.8578 0.4863 19 6 5.1729 6.9062 1.8409 20 7 4.8318 5.6641 2.2781 21 6 4.6783 5.2431 3.6728 22 6 5.9845 4.6145 4.1625 23 9 7.0175 5.5535 4.0698 24 9 5.8382 4.2129 5.4947 25 9 6.2925 3.5028 3.3711 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9336 0.9287 -0.8892 34 1 3.9329 0.9289 0.8908 35 1 5.9835 1.1954 -2.7172 36 1 5.4379 7.6815 -0.1706 37 1 5.3817 7.7685 2.4567 38 1 4.4385 6.1093 4.2896 39 1 3.8736 4.5115 3.7451 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198300831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:11 Heat of formation + Delta-G solvation = -134.502731 kcal Electronic energy + Delta-G solvation = -28471.275951 eV Core-core repulsion = 23999.982098 eV Total energy + Delta-G solvation = -4471.293853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.18062 -48.72866 -48.63258 -43.04692 -40.13408 -37.21245 -35.78410 -35.28304 -33.32635 -31.18835 -30.12364 -29.46268 -26.80521 -25.32771 -24.69898 -23.02510 -22.21435 -21.81837 -20.99014 -19.92728 -19.53957 -19.40711 -18.43463 -17.52372 -17.20093 -16.61322 -16.19240 -16.13041 -15.89465 -15.63911 -15.53224 -15.24261 -15.09754 -15.03413 -14.81640 -14.79071 -14.68124 -14.29533 -14.23256 -13.79998 -13.72308 -13.57940 -13.21753 -13.05934 -12.81377 -12.77376 -12.13893 -12.03681 -11.93310 -11.82444 -11.39480 -11.06958 -10.88978 -10.76001 -10.38346 -9.49565 -9.20355 -8.18093 -5.97026 0.43561 1.31953 1.48495 1.49542 1.59065 1.66763 1.92739 2.37542 2.60768 2.75437 2.80072 2.91409 3.17036 3.21638 3.73182 3.85050 3.98065 4.08790 4.12697 4.27835 4.34459 4.51588 4.60333 4.61253 4.86145 4.89396 5.02484 5.07839 5.19977 5.22133 5.39991 5.46733 5.56138 5.68078 5.87491 5.95317 6.10561 6.62796 7.01938 7.25436 7.57287 7.96320 8.83600 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.011544 B = 0.005695 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.880691 B = 4915.354863 C = 6363.378747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.112 4.112 4 C 0.113 3.887 5 N -0.421 5.421 6 C -0.319 4.319 7 H 0.115 0.885 8 C -0.003 4.003 9 N -0.908 5.908 10 Si 0.984 3.016 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.264 1.264 14 C 0.527 3.473 15 O -0.617 6.617 16 C 0.155 3.845 17 N -0.443 5.443 18 C -0.060 4.060 19 C -0.014 4.014 20 N -0.440 5.440 21 C 0.073 3.927 22 C 0.440 3.560 23 F -0.183 7.183 24 F -0.173 7.173 25 F -0.187 7.187 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.038 0.962 35 H 0.268 0.732 36 H 0.200 0.800 37 H 0.233 0.767 38 H 0.187 0.813 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.156 8.661 8.734 12.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.150 4.150 4 C -0.010 4.010 5 N -0.137 5.137 6 C -0.448 4.448 7 H 0.133 0.867 8 C -0.203 4.203 9 N -0.547 5.547 10 Si 0.808 3.192 11 H -0.195 1.195 12 H -0.211 1.211 13 H -0.188 1.188 14 C 0.315 3.685 15 O -0.505 6.505 16 C -0.104 4.104 17 N -0.164 5.164 18 C -0.211 4.211 19 C -0.148 4.148 20 N -0.124 5.124 21 C -0.051 4.051 22 C 0.385 3.615 23 F -0.164 7.164 24 F -0.154 7.154 25 F -0.169 7.169 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.217 0.783 37 H 0.250 0.750 38 H 0.204 0.796 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.229 7.788 8.421 12.225 hybrid contribution 0.912 0.164 0.025 0.927 sum -3.317 7.951 8.446 12.065 Atomic orbital electron populations 1.21704 0.94084 1.02335 1.01792 1.21398 0.97106 0.95009 1.01791 1.21755 0.94943 0.97906 1.00411 1.21591 0.93426 0.83589 1.02426 1.43383 1.53391 1.12271 1.04622 1.20222 1.36516 0.99264 0.88749 0.86733 1.26286 0.94650 0.95994 1.03396 1.69810 1.33257 1.16201 1.35465 0.85130 0.78774 0.78038 0.77276 1.19500 1.21085 1.18841 1.17179 0.81914 0.84451 0.84933 1.90591 1.60336 1.67795 1.31786 1.22732 1.10708 0.94895 0.82029 1.70807 1.14070 1.03957 1.27545 1.23236 1.07768 0.95951 0.94131 1.23706 1.05583 0.88322 0.97213 1.45195 1.51274 1.10136 1.05826 1.23232 0.94196 1.06274 0.81412 1.20984 0.87836 0.77127 0.75588 1.93185 1.62479 1.64820 1.95928 1.93190 1.95805 1.91223 1.35227 1.93302 1.94136 1.55130 1.74309 0.92772 0.92729 0.91110 0.92172 0.92230 0.93956 0.92865 0.88410 0.94387 0.92200 0.78348 0.75025 0.79598 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.91 71.98 0.71 -3.00 16 2 C -0.11 -3.79 5.93 30.59 0.18 -3.61 16 3 C -0.11 -4.58 5.54 30.60 0.17 -4.41 16 4 C 0.11 5.60 5.02 86.38 0.43 6.03 16 5 N -0.42 -22.39 2.49 -639.51 -1.59 -23.98 16 6 C -0.32 -17.14 7.94 84.13 0.67 -16.47 16 7 H 0.12 6.15 5.84 -2.91 -0.02 6.14 16 8 C 0.00 -0.14 5.21 84.97 0.44 0.30 16 9 N -0.91 -50.69 11.12 21.69 0.24 -50.45 16 10 Si 0.98 42.70 29.57 68.60 2.03 44.73 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 13 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 14 C 0.53 26.85 7.34 86.60 0.64 27.49 16 15 O -0.62 -31.51 12.41 -4.23 -0.05 -31.56 16 16 C 0.15 6.85 7.22 136.17 0.98 7.83 16 17 N -0.44 -19.40 7.92 -189.59 -1.50 -20.90 16 18 C -0.06 -1.92 11.85 83.89 0.99 -0.93 16 19 C -0.01 -0.36 11.56 83.43 0.96 0.60 16 20 N -0.44 -14.32 2.66 -515.97 -1.37 -15.70 16 21 C 0.07 1.88 5.55 86.38 0.48 2.36 16 22 C 0.44 13.29 3.29 71.98 0.24 13.52 16 23 F -0.18 -5.20 17.24 44.97 0.78 -4.42 16 24 F -0.17 -4.72 17.32 44.97 0.78 -3.94 16 25 F -0.19 -7.86 14.53 44.97 0.65 -7.21 16 26 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.10 5.23 5.46 -2.39 -0.01 5.22 16 34 H 0.04 1.97 7.35 -2.39 -0.02 1.95 16 35 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 36 H 0.20 4.82 8.06 -2.91 -0.02 4.80 16 37 H 0.23 3.08 8.06 -2.91 -0.02 3.05 16 38 H 0.19 2.43 8.13 -2.39 -0.02 2.41 16 39 H 0.14 3.92 6.74 -2.39 -0.02 3.90 16 Total: -1.00 -71.18 337.88 7.94 -63.24 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 1.08 Total: 20.48 kcal Atomic # 6 Polarization: 22.82 SS G_CDS: 6.90 Total: 29.72 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -4.22 Total: -111.02 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.05 Total: -31.56 kcal Atomic # 9 Polarization: -17.78 SS G_CDS: 2.21 Total: -15.57 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -71.18 7.94 -63.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198300831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.266 kcal (2) G-P(sol) polarization free energy of solvation -71.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds