Wall clock time and date at job start Tue Mar 31 2020 12:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46867 * 2 1 4 4 C 1.52995 * 109.47142 * 120.00218 * 2 1 3 5 5 N 1.46500 * 109.47111 * 174.69673 * 4 2 1 6 6 N 1.28472 * 124.87409 * 95.43486 * 5 4 2 7 7 C 1.31872 * 110.06018 * 180.02562 * 6 5 4 8 8 C 1.47599 * 126.52314 * 179.97438 * 7 6 5 9 9 O 1.21610 * 120.00118 * 185.47510 * 8 7 6 10 10 N 1.34782 * 120.00362 * 5.47128 * 8 7 6 11 11 C 1.46501 * 119.99977 * 175.13321 * 10 8 7 12 12 C 1.36911 * 119.99395 * 355.13806 * 10 8 7 13 13 H 1.07999 * 120.00318 * 35.07011 * 12 10 8 14 14 C 1.39023 * 119.99505 * 215.06191 * 12 10 8 15 15 N 1.31378 * 120.00205 * 5.99222 * 14 12 10 16 16 Si 1.86801 * 119.99698 * 185.98185 * 14 12 10 17 17 H 1.48498 * 109.46822 * 90.00717 * 16 14 12 18 18 H 1.48499 * 109.46954 * 210.00469 * 16 14 12 19 19 H 1.48496 * 109.47302 * 330.00329 * 16 14 12 20 20 C 1.41544 * 106.94850 * 359.75051 * 7 6 5 21 21 C 1.35047 * 124.88450 * 275.47230 * 5 4 2 22 22 C 1.50704 * 126.37687 * 359.96440 * 21 5 4 23 23 F 1.39906 * 109.46886 * 83.79818 * 22 21 5 24 24 F 1.39899 * 109.47211 * 323.80202 * 22 21 5 25 25 F 1.39895 * 109.46987 * 203.79848 * 22 21 5 26 26 H 1.08993 * 109.47255 * 300.00117 * 1 2 3 27 27 H 1.09008 * 109.46989 * 59.99985 * 1 2 3 28 28 H 1.08997 * 109.46798 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47054 * 240.00303 * 2 1 3 30 30 H 1.09001 * 109.47760 * 305.07935 * 3 2 1 31 31 H 1.09005 * 109.47291 * 65.08411 * 3 2 1 32 32 H 1.09002 * 109.47098 * 185.07980 * 3 2 1 33 33 H 1.09000 * 109.47044 * 54.69594 * 4 2 1 34 34 H 1.09003 * 109.47266 * 294.69890 * 4 2 1 35 35 H 1.09003 * 109.46850 * 94.56445 * 11 10 8 36 36 H 1.08997 * 109.46790 * 214.55974 * 11 10 8 37 37 H 1.08994 * 109.47128 * 334.55957 * 11 10 8 38 38 H 0.97001 * 120.00429 * 179.97438 * 15 14 12 39 39 H 1.08001 * 127.24682 * 180.26945 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4994 -0.8328 1.1870 6 7 4.3228 -0.0150 1.7382 7 6 5.5635 -0.3913 1.4974 8 6 6.7918 0.2858 1.9574 9 8 7.8798 -0.1080 1.5831 10 7 6.7076 1.3405 2.7924 11 6 7.9272 1.9456 3.3334 12 6 5.4823 1.8462 3.1349 13 1 4.6382 1.1830 3.2532 14 6 5.3248 3.2136 3.3304 15 7 6.3190 4.0329 3.0729 16 14 3.6993 3.8859 3.9591 17 1 3.7219 3.9279 5.4433 18 1 3.4923 5.2572 3.4282 19 1 2.5915 3.0071 3.5056 20 6 5.4931 -1.5709 0.7182 21 6 4.1726 -1.8095 0.5416 22 6 3.5664 -2.9556 -0.2266 23 9 3.2567 -2.5350 -1.5245 24 9 2.3993 -3.3823 0.4161 25 9 4.4802 -4.0133 -0.2846 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6043 1.9820 -0.8410 31 1 1.7529 1.9294 0.9320 32 1 3.1262 1.4439 -0.0910 33 1 1.6012 -1.7178 1.2979 34 1 1.7563 -0.1556 2.1367 35 1 8.2236 2.7873 2.7075 36 1 7.7395 2.2958 4.3483 37 1 8.7257 1.2038 3.3469 38 1 6.2090 4.9870 3.2090 39 1 6.3193 -2.1559 0.3419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199603032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:13 Heat of formation + Delta-G solvation = -98.287353 kcal Electronic energy + Delta-G solvation = -28579.869425 eV Core-core repulsion = 24110.145989 eV Total energy + Delta-G solvation = -4469.723436 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.27155 -47.82832 -47.71741 -42.37024 -38.21449 -36.46555 -34.74140 -32.00315 -31.63906 -31.30807 -27.31518 -27.16596 -26.41985 -25.40882 -24.57512 -21.95950 -21.38953 -20.31939 -19.38918 -18.63164 -18.36806 -18.31268 -16.64260 -16.37492 -15.91587 -15.09387 -14.99127 -14.59370 -14.54889 -14.30482 -14.22890 -14.17826 -13.99152 -13.89685 -13.84852 -13.79931 -13.38291 -12.85415 -12.70023 -12.35971 -12.17233 -12.01515 -11.77739 -11.35561 -11.28142 -11.11963 -11.03566 -10.99754 -10.83623 -10.74563 -10.37642 -9.83071 -9.11182 -9.09019 -8.73526 -8.65216 -7.58879 -6.33747 -4.00132 1.81224 2.31390 2.47368 2.74715 3.13666 3.18637 3.21957 3.57443 3.98887 4.08400 4.27971 4.42018 4.47981 4.61249 4.71128 4.90912 5.01035 5.13515 5.28034 5.44536 5.47711 5.60934 5.64282 5.78234 5.86137 5.96182 5.98355 6.15227 6.19913 6.45229 6.61803 6.76954 6.92430 6.95383 7.34780 7.57758 7.87005 8.32751 8.47427 9.08577 9.47390 9.87500 10.68581 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.013335 B = 0.005838 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.280254 B = 4794.862614 C = 6439.706512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.149 4.149 4 C 0.107 3.893 5 N -0.267 5.267 6 N -0.190 5.190 7 C 0.024 3.976 8 C 0.529 3.471 9 O -0.603 6.603 10 N -0.420 5.420 11 C 0.115 3.885 12 C -0.324 4.324 13 H 0.119 0.881 14 C 0.041 3.959 15 N -0.870 5.870 16 Si 0.921 3.079 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.266 1.266 20 C -0.119 4.119 21 C -0.114 4.114 22 C 0.550 3.450 23 F -0.172 7.172 24 F -0.178 7.178 25 F -0.164 7.164 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.040 0.960 38 H 0.269 0.731 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.804 -8.976 -4.663 15.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.206 4.206 4 C -0.014 4.014 5 N -0.056 5.056 6 N -0.025 5.025 7 C -0.134 4.134 8 C 0.316 3.684 9 O -0.489 6.489 10 N -0.136 5.136 11 C -0.028 4.028 12 C -0.454 4.454 13 H 0.136 0.864 14 C -0.165 4.165 15 N -0.508 5.508 16 Si 0.747 3.253 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.190 1.190 20 C -0.149 4.149 21 C -0.238 4.238 22 C 0.494 3.506 23 F -0.154 7.154 24 F -0.160 7.160 25 F -0.145 7.145 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.985 -8.125 -4.270 15.096 hybrid contribution -0.538 -0.182 -0.208 0.604 sum -12.523 -8.307 -4.478 15.681 Atomic orbital electron populations 1.21760 0.93536 1.02046 1.02700 1.21552 0.96680 0.98030 0.97061 1.21846 1.02373 0.94176 1.02194 1.22439 0.73617 1.03780 1.01516 1.45838 1.07564 1.16548 1.35649 1.74525 1.00301 1.13207 1.14438 1.22200 0.91976 0.96367 1.02865 1.16866 0.85448 0.84237 0.81819 1.90640 1.27348 1.70046 1.60819 1.43403 1.07456 1.25781 1.36925 1.21412 0.85708 0.96834 0.98825 1.20181 0.87556 0.91649 1.45995 0.86441 1.25485 0.98436 0.96102 0.96430 1.69932 1.31648 1.03907 1.45299 0.86020 0.82180 0.78247 0.78808 1.20404 1.20955 1.19050 1.21549 0.93775 0.98367 1.01203 1.20897 0.94019 0.97931 1.10976 1.17148 0.75303 0.81070 0.77098 1.93235 1.93052 1.89960 1.39109 1.93131 1.50340 1.90931 1.81582 1.93219 1.66654 1.58337 1.96301 0.92023 0.91784 0.92381 0.90507 0.92544 0.91892 0.91680 0.87807 0.87202 0.91519 0.92597 0.94102 0.92106 0.81598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.19 37.16 0.34 -0.92 16 2 C -0.11 -1.35 3.12 -90.62 -0.28 -1.63 16 3 C -0.15 -2.09 8.96 37.16 0.33 -1.76 16 4 C 0.11 1.37 5.33 -4.04 -0.02 1.35 16 5 N -0.27 -4.49 2.91 -57.11 -0.17 -4.66 16 6 N -0.19 -3.92 8.08 33.41 0.27 -3.65 16 7 C 0.02 0.53 6.86 -82.77 -0.57 -0.04 16 8 C 0.53 13.60 7.63 -12.44 -0.09 13.50 16 9 O -0.60 -16.42 16.49 5.27 0.09 -16.33 16 10 N -0.42 -10.97 2.97 -123.36 -0.37 -11.34 16 11 C 0.12 2.84 8.78 59.85 0.53 3.36 16 12 C -0.32 -8.34 8.33 -14.99 -0.12 -8.47 16 13 H 0.12 2.94 5.38 -52.49 -0.28 2.66 16 14 C 0.04 1.04 5.26 -17.46 -0.09 0.95 16 15 N -0.87 -23.06 11.12 55.50 0.62 -22.44 16 16 Si 0.92 19.61 29.56 -169.99 -5.02 14.58 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 C -0.12 -2.24 10.34 -39.35 -0.41 -2.65 16 21 C -0.11 -1.87 6.37 -82.21 -0.52 -2.39 16 22 C 0.55 7.44 3.38 36.01 0.12 7.56 16 23 F -0.17 -2.29 16.68 2.25 0.04 -2.25 16 24 F -0.18 -2.18 14.84 2.25 0.03 -2.14 16 25 F -0.16 -2.20 16.97 2.25 0.04 -2.16 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.95 7.51 -51.93 -0.39 0.55 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.13 7.47 -51.93 -0.39 0.74 16 33 H 0.10 1.12 5.85 -51.93 -0.30 0.81 16 34 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.07 1.72 7.19 -51.93 -0.37 1.35 16 36 H 0.06 1.34 7.90 -51.93 -0.41 0.93 16 37 H 0.04 0.95 7.36 -51.93 -0.38 0.57 16 38 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 39 H 0.17 2.87 8.06 -52.49 -0.42 2.44 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -29.39 338.37 -4.79 -34.18 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.62 Total: 2.24 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -0.79 Total: 8.88 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.35 Total: -42.09 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.09 Total: -16.33 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.11 Total: -6.56 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.39 -4.79 -34.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199603032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.105 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds