Wall clock time and date at job start Tue Mar 31 2020 12:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46867 * 2 1 4 4 C 1.52995 * 109.47142 * 120.00218 * 2 1 3 5 5 N 1.46500 * 109.47111 * 174.69673 * 4 2 1 6 6 N 1.28472 * 124.87409 * 95.43486 * 5 4 2 7 7 C 1.31872 * 110.06018 * 180.02562 * 6 5 4 8 8 C 1.47599 * 126.52314 * 179.97438 * 7 6 5 9 9 O 1.21610 * 120.00118 * 185.47510 * 8 7 6 10 10 N 1.34782 * 120.00362 * 5.47128 * 8 7 6 11 11 C 1.46501 * 119.99977 * 175.13321 * 10 8 7 12 12 C 1.36911 * 119.99395 * 355.13806 * 10 8 7 13 13 H 1.07999 * 120.00318 * 35.07011 * 12 10 8 14 14 C 1.39023 * 119.99505 * 215.06191 * 12 10 8 15 15 N 1.31378 * 120.00205 * 5.99222 * 14 12 10 16 16 Si 1.86801 * 119.99698 * 185.98185 * 14 12 10 17 17 H 1.48498 * 109.46822 * 90.00717 * 16 14 12 18 18 H 1.48499 * 109.46954 * 210.00469 * 16 14 12 19 19 H 1.48496 * 109.47302 * 330.00329 * 16 14 12 20 20 C 1.41544 * 106.94850 * 359.75051 * 7 6 5 21 21 C 1.35047 * 124.88450 * 275.47230 * 5 4 2 22 22 C 1.50704 * 126.37687 * 359.96440 * 21 5 4 23 23 F 1.39906 * 109.46886 * 83.79818 * 22 21 5 24 24 F 1.39899 * 109.47211 * 323.80202 * 22 21 5 25 25 F 1.39895 * 109.46987 * 203.79848 * 22 21 5 26 26 H 1.08993 * 109.47255 * 300.00117 * 1 2 3 27 27 H 1.09008 * 109.46989 * 59.99985 * 1 2 3 28 28 H 1.08997 * 109.46798 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47054 * 240.00303 * 2 1 3 30 30 H 1.09001 * 109.47760 * 305.07935 * 3 2 1 31 31 H 1.09005 * 109.47291 * 65.08411 * 3 2 1 32 32 H 1.09002 * 109.47098 * 185.07980 * 3 2 1 33 33 H 1.09000 * 109.47044 * 54.69594 * 4 2 1 34 34 H 1.09003 * 109.47266 * 294.69890 * 4 2 1 35 35 H 1.09003 * 109.46850 * 94.56445 * 11 10 8 36 36 H 1.08997 * 109.46790 * 214.55974 * 11 10 8 37 37 H 1.08994 * 109.47128 * 334.55957 * 11 10 8 38 38 H 0.97001 * 120.00429 * 179.97438 * 15 14 12 39 39 H 1.08001 * 127.24682 * 180.26945 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4994 -0.8328 1.1870 6 7 4.3228 -0.0150 1.7382 7 6 5.5635 -0.3913 1.4974 8 6 6.7918 0.2858 1.9574 9 8 7.8798 -0.1080 1.5831 10 7 6.7076 1.3405 2.7924 11 6 7.9272 1.9456 3.3334 12 6 5.4823 1.8462 3.1349 13 1 4.6382 1.1830 3.2532 14 6 5.3248 3.2136 3.3304 15 7 6.3190 4.0329 3.0729 16 14 3.6993 3.8859 3.9591 17 1 3.7219 3.9279 5.4433 18 1 3.4923 5.2572 3.4282 19 1 2.5915 3.0071 3.5056 20 6 5.4931 -1.5709 0.7182 21 6 4.1726 -1.8095 0.5416 22 6 3.5664 -2.9556 -0.2266 23 9 3.2567 -2.5350 -1.5245 24 9 2.3993 -3.3823 0.4161 25 9 4.4802 -4.0133 -0.2846 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6043 1.9820 -0.8410 31 1 1.7529 1.9294 0.9320 32 1 3.1262 1.4439 -0.0910 33 1 1.6012 -1.7178 1.2979 34 1 1.7563 -0.1556 2.1367 35 1 8.2236 2.7873 2.7075 36 1 7.7395 2.2958 4.3483 37 1 8.7257 1.2038 3.3469 38 1 6.2090 4.9870 3.2090 39 1 6.3193 -2.1559 0.3419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199603032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:13 Heat of formation + Delta-G solvation = -114.508604 kcal Electronic energy + Delta-G solvation = -28580.572832 eV Core-core repulsion = 24110.145989 eV Total energy + Delta-G solvation = -4470.426843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.35718 -48.88754 -48.80606 -43.84241 -40.16834 -37.52825 -36.74114 -33.57327 -33.22294 -32.90358 -28.96317 -28.14463 -27.82578 -26.96124 -26.26346 -23.60365 -22.65607 -21.40445 -21.09483 -19.93746 -19.71744 -19.42909 -18.37143 -17.88216 -17.25535 -16.66123 -16.35439 -16.15414 -15.94083 -15.70748 -15.63344 -15.60069 -15.24401 -15.07184 -14.95842 -14.91587 -14.62637 -14.62412 -13.81533 -13.74227 -13.51933 -13.21291 -13.14342 -13.09021 -12.89976 -12.78032 -12.61783 -12.31078 -12.08605 -11.98379 -11.77755 -11.54747 -11.05507 -10.71188 -10.56028 -10.16096 -9.59405 -8.27346 -6.01484 0.42533 0.76423 1.06229 1.43791 1.46114 1.53751 1.57183 2.28220 2.38594 2.51767 2.84513 2.90928 3.15319 3.19112 3.38071 3.62047 3.81362 3.96966 4.13919 4.30958 4.34056 4.46418 4.51024 4.57178 4.74140 4.76521 4.86590 4.90723 4.98580 5.11256 5.17652 5.28748 5.31221 5.33258 5.48763 5.68217 5.90147 6.50297 6.76740 7.13135 7.50540 7.89384 8.76192 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.013335 B = 0.005838 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.280254 B = 4794.862614 C = 6439.706512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C -0.148 4.148 4 C 0.093 3.907 5 N -0.253 5.253 6 N -0.203 5.203 7 C -0.013 4.013 8 C 0.520 3.480 9 O -0.630 6.630 10 N -0.436 5.436 11 C 0.126 3.874 12 C -0.338 4.338 13 H 0.124 0.876 14 C -0.003 4.003 15 N -0.904 5.904 16 Si 0.984 3.016 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.250 1.250 20 C -0.130 4.130 21 C -0.099 4.099 22 C 0.564 3.436 23 F -0.166 7.166 24 F -0.164 7.164 25 F -0.160 7.160 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.024 0.976 33 H 0.133 0.867 34 H 0.116 0.884 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.270 0.730 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.194 -10.207 -5.048 18.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 C -0.205 4.205 4 C -0.025 4.025 5 N -0.042 5.042 6 N -0.040 5.040 7 C -0.169 4.169 8 C 0.308 3.692 9 O -0.518 6.518 10 N -0.152 5.152 11 C -0.017 4.017 12 C -0.467 4.467 13 H 0.141 0.859 14 C -0.205 4.205 15 N -0.542 5.542 16 Si 0.807 3.193 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.174 1.174 20 C -0.159 4.159 21 C -0.225 4.225 22 C 0.508 3.492 23 F -0.147 7.147 24 F -0.145 7.145 25 F -0.141 7.141 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.151 0.849 34 H 0.134 0.866 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.386 -9.365 -4.650 18.602 hybrid contribution 0.470 0.146 -0.153 0.515 sum -14.916 -9.219 -4.803 18.181 Atomic orbital electron populations 1.21742 0.90583 1.03589 1.03522 1.21540 0.98921 0.96007 0.96199 1.21831 0.99821 0.96277 1.02584 1.22962 0.71116 1.05866 1.02550 1.46201 1.08761 1.15431 1.33822 1.74359 1.00194 1.14178 1.15248 1.21820 0.91520 0.98127 1.05428 1.17378 0.86485 0.84033 0.81266 1.90587 1.28745 1.70730 1.61705 1.43654 1.07928 1.26205 1.37413 1.21250 0.85888 0.96249 0.98328 1.20453 0.87632 0.92188 1.46445 0.85920 1.26356 1.01799 0.96050 0.96274 1.70056 1.33602 1.04156 1.46392 0.85058 0.78425 0.77474 0.78350 1.19709 1.21051 1.17356 1.21644 0.95384 0.97638 1.01267 1.21154 0.93266 0.98164 1.09869 1.16678 0.75554 0.80075 0.76870 1.93257 1.92965 1.89944 1.38558 1.93161 1.49355 1.90624 1.81372 1.93239 1.66728 1.57894 1.96254 0.91370 0.90895 0.90488 0.90720 0.90947 0.92491 0.95655 0.84926 0.86572 0.93317 0.92556 0.93557 0.92035 0.80768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.19 71.98 0.66 -1.18 16 2 C -0.11 -2.21 3.12 -10.79 -0.03 -2.24 16 3 C -0.15 -3.93 8.96 71.98 0.65 -3.28 16 4 C 0.09 2.11 5.33 86.38 0.46 2.57 16 5 N -0.25 -8.07 2.91 -334.60 -0.97 -9.05 16 6 N -0.20 -8.35 8.08 -48.20 -0.39 -8.74 16 7 C -0.01 -0.58 6.86 42.43 0.29 -0.29 16 8 C 0.52 27.67 7.63 86.71 0.66 28.33 16 9 O -0.63 -35.60 16.49 -4.06 -0.07 -35.67 16 10 N -0.44 -23.59 2.97 -662.45 -1.97 -25.56 16 11 C 0.13 6.47 8.78 127.77 1.12 7.59 16 12 C -0.34 -17.73 8.33 84.09 0.70 -17.03 16 13 H 0.12 6.19 5.38 -2.91 -0.02 6.18 16 14 C 0.00 -0.14 5.26 84.95 0.45 0.31 16 15 N -0.90 -49.02 11.12 21.68 0.24 -48.77 16 16 Si 0.98 39.86 29.56 68.60 2.03 41.88 16 17 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 19 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 20 C -0.13 -4.86 10.34 22.42 0.23 -4.63 16 21 C -0.10 -3.07 6.37 41.40 0.26 -2.81 16 22 C 0.56 13.58 3.38 71.24 0.24 13.82 16 23 F -0.17 -3.89 16.68 44.97 0.75 -3.14 16 24 F -0.16 -3.33 14.84 44.97 0.67 -2.66 16 25 F -0.16 -3.87 16.97 44.97 0.76 -3.11 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 1.60 7.51 -2.39 -0.02 1.58 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.02 0.85 7.47 -2.39 -0.02 0.84 16 33 H 0.13 2.27 5.85 -2.39 -0.01 2.25 16 34 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.05 2.64 7.19 -2.39 -0.02 2.62 16 36 H 0.06 2.81 7.90 -2.39 -0.02 2.79 16 37 H 0.05 2.26 7.36 -2.39 -0.02 2.24 16 38 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 39 H 0.17 6.02 8.06 -2.91 -0.02 6.00 16 Total: -1.00 -65.20 338.37 7.84 -57.36 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.09 Total: 16.29 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 5.69 Total: 21.16 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -3.09 Total: -92.12 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.07 Total: -35.67 kcal Atomic # 9 Polarization: -11.09 SS G_CDS: 2.18 Total: -8.91 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.88 kcal Total: -65.20 7.84 -57.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199603032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.147 kcal (2) G-P(sol) polarization free energy of solvation -65.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds