Wall clock time and date at job start Tue Mar 31 2020 14:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45206 * 109.47124 * 2 1 4 4 C 1.34224 * 116.99800 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00686 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99691 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.47259 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.47704 * 54.99624 * 7 6 4 9 9 C 1.50700 * 109.47318 * 175.00019 * 7 6 4 10 10 H 1.07999 * 119.99988 * 239.99541 * 9 7 6 11 11 C 1.37885 * 120.00047 * 59.99721 * 9 7 6 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 7 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47163 * 59.99902 * 13 11 9 15 15 H 1.48495 * 109.47159 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47290 * 299.99897 * 13 11 9 17 17 O 1.42903 * 109.46617 * 294.99555 * 7 6 4 18 18 C 1.35279 * 116.99724 * 149.99767 * 17 7 6 19 19 N 1.30756 * 125.03289 * 359.70390 * 18 17 7 20 20 C 1.35791 * 109.47174 * 179.89094 * 19 18 17 21 21 C 1.40631 * 107.24625 * 0.35645 * 20 19 18 22 22 N 1.32249 * 120.37544 * 179.78455 * 21 20 19 23 23 C 1.31780 * 121.59416 * 0.04518 * 22 21 20 24 24 C 1.38497 * 121.33981 * 359.95738 * 23 22 21 25 25 C 1.38296 * 119.54033 * 0.02562 * 24 23 22 26 26 C 1.50698 * 120.91618 * 179.97438 * 25 24 23 27 27 N 1.36471 * 125.03355 * 179.97438 * 18 17 7 28 28 H 0.97001 * 126.28727 * 359.93843 * 27 18 17 29 29 H 1.09004 * 109.46923 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47539 * 300.00179 * 1 2 3 31 31 H 1.09008 * 109.47160 * 60.00209 * 1 2 3 32 32 H 1.08996 * 109.47539 * 239.99820 * 2 1 3 33 33 H 1.09008 * 109.47160 * 119.99791 * 2 1 3 34 34 H 1.08996 * 109.47325 * 60.00148 * 6 4 3 35 35 H 1.09003 * 109.47295 * 299.99721 * 6 4 3 36 36 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 37 37 H 1.07995 * 119.33531 * 179.97438 * 23 22 21 38 38 H 1.07996 * 120.22646 * 180.02562 * 24 23 22 39 39 H 1.09002 * 109.47377 * 270.02481 * 26 25 24 40 40 H 1.09000 * 109.47152 * 30.02685 * 26 25 24 41 41 H 1.08995 * 109.47397 * 150.02738 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9374 0.0000 7 6 5.4485 2.8574 0.0001 8 1 5.7807 2.2494 -0.8413 9 6 6.0243 4.2445 -0.1242 10 1 6.6591 4.4926 -0.9620 11 6 5.7405 5.1970 0.8315 12 7 4.9629 4.8965 1.8488 13 14 6.4535 6.9166 0.6770 14 1 5.9897 7.5326 -0.5922 15 1 6.0007 7.7451 1.8231 16 1 7.9366 6.8394 0.6767 17 8 5.8943 2.2645 1.2216 18 6 7.0478 1.5592 1.1767 19 7 7.7753 1.3775 0.1056 20 6 8.8623 0.6263 0.4187 21 6 8.7792 0.3239 1.7896 22 7 9.7147 -0.4082 2.3708 23 6 10.7458 -0.8742 1.6953 24 6 10.8958 -0.6181 0.3425 25 6 9.9471 0.1421 -0.3169 26 6 10.0799 0.4403 -1.7881 27 7 7.6218 0.9277 2.2417 28 1 7.2800 0.9068 3.1492 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.5843 3.4701 0.8895 35 1 3.5851 3.4690 -0.8905 36 1 4.7636 5.5665 2.5213 37 1 11.4887 -1.4681 2.2067 38 1 11.7478 -1.0092 -0.1937 39 1 10.6421 1.3644 -1.9223 40 1 10.6052 -0.3791 -2.2789 41 1 9.0885 0.5511 -2.2273 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231056413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:12 Heat of formation + Delta-G solvation = -42.768612 kcal Electronic energy + Delta-G solvation = -26949.086101 eV Core-core repulsion = 23023.626878 eV Total energy + Delta-G solvation = -3925.459223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64297 -39.87002 -38.38156 -36.93577 -35.87757 -33.94366 -33.28663 -31.64898 -31.30306 -30.39744 -28.88986 -26.88293 -26.37593 -23.46838 -22.66157 -22.51088 -21.56926 -20.56566 -19.85987 -18.12437 -17.37688 -17.11517 -16.59621 -16.21136 -15.78282 -15.59647 -15.36386 -15.16829 -14.70926 -14.23289 -13.86274 -13.63868 -13.31284 -12.94347 -12.86230 -12.60416 -12.34655 -12.29907 -12.21826 -11.93409 -11.57706 -11.45789 -11.36020 -11.16812 -11.07459 -10.91032 -10.57839 -10.29927 -10.25644 -10.19800 -9.79905 -9.53289 -9.20224 -8.85343 -8.63974 -8.31077 -7.29142 -6.35629 -4.53173 1.40454 1.70342 2.61719 2.93324 3.15717 3.22067 3.23556 3.28634 3.61209 4.18453 4.28313 4.38326 4.73283 4.95783 5.04242 5.04471 5.10715 5.21773 5.33369 5.39102 5.42242 5.55168 5.77587 5.84991 5.85645 5.87931 5.94565 6.02988 6.21489 6.24473 6.31895 6.40396 6.51550 6.66092 6.79099 6.92083 7.05660 7.21944 7.41960 7.61624 7.82085 8.24571 8.36368 8.42660 8.54026 8.78292 9.23484 10.66047 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.008942 B = 0.005135 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.395300 B = 5451.637450 C = 7580.815496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.455 3.545 5 O -0.514 6.514 6 C -0.103 4.103 7 C 0.237 3.763 8 H 0.057 0.943 9 C -0.542 4.542 10 H 0.074 0.926 11 C 0.081 3.919 12 N -0.863 5.863 13 Si 0.900 3.100 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.274 1.274 17 O -0.274 6.274 18 C 0.534 3.466 19 N -0.533 5.533 20 C 0.050 3.950 21 C 0.231 3.769 22 N -0.483 5.483 23 C 0.101 3.899 24 C -0.186 4.186 25 C -0.016 4.016 26 C -0.105 4.105 27 N -0.592 5.592 28 H 0.424 0.576 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.141 0.859 35 H 0.109 0.891 36 H 0.270 0.730 37 H 0.156 0.844 38 H 0.134 0.866 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.325 -8.042 -2.592 8.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.283 6.283 4 C 0.300 3.700 5 O -0.402 6.402 6 C -0.140 4.140 7 C 0.184 3.816 8 H 0.075 0.925 9 C -0.578 4.578 10 H 0.092 0.908 11 C -0.126 4.126 12 N -0.498 5.498 13 Si 0.727 3.273 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.199 1.199 17 O -0.174 6.174 18 C 0.231 3.769 19 N -0.273 5.273 20 C -0.072 4.072 21 C -0.006 4.006 22 N -0.197 5.197 23 C -0.063 4.063 24 C -0.208 4.208 25 C -0.025 4.025 26 C -0.162 4.162 27 N -0.218 5.218 28 H 0.263 0.737 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.158 0.842 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.173 0.827 38 H 0.152 0.848 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.179 -7.988 -2.205 8.288 hybrid contribution 0.405 0.661 0.541 0.945 sum 0.225 -7.327 -1.664 7.517 Atomic orbital electron populations 1.21779 0.93227 1.02368 1.03356 1.22865 0.94898 0.81690 1.02059 1.86572 1.26014 1.31059 1.84686 1.24881 0.79596 0.94274 0.71292 1.90619 1.60191 1.43620 1.45756 1.21895 0.96175 0.88346 1.07605 1.19951 0.88043 0.92732 0.80921 0.92480 1.21421 1.32053 0.94041 1.10321 0.90812 1.25147 0.93681 0.99381 0.94434 1.69835 1.34023 1.34932 1.11045 0.86508 0.79896 0.82895 0.78002 1.19566 1.20949 1.19880 1.86239 1.29433 1.60160 1.41552 1.20898 0.88073 0.86677 0.81205 1.70948 1.06661 1.25114 1.24576 1.19452 0.95978 0.99861 0.91938 1.18536 0.90211 1.00020 0.91814 1.66194 1.01945 1.11224 1.40319 1.22183 0.94132 0.98602 0.91410 1.21591 1.00456 1.02812 0.95979 1.19390 0.91359 0.95471 0.96314 1.20650 1.03429 1.01423 0.90681 1.42144 1.20380 1.46936 1.12302 0.73730 0.90813 0.91594 0.91652 0.91799 0.91807 0.84152 0.87283 0.92037 0.82651 0.84817 0.90942 0.91780 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 37.15 0.38 -1.21 16 2 C 0.06 0.85 6.19 37.15 0.23 1.08 16 3 O -0.37 -6.55 10.22 -39.24 -0.40 -6.96 16 4 C 0.46 9.42 7.84 36.01 0.28 9.70 16 5 O -0.51 -11.82 15.17 -24.05 -0.36 -12.19 16 6 C -0.10 -2.21 5.22 -27.88 -0.15 -2.36 16 7 C 0.24 5.74 1.69 -27.88 -0.05 5.69 16 8 H 0.06 1.43 7.05 -51.93 -0.37 1.06 16 9 C -0.54 -13.80 8.90 -34.44 -0.31 -14.11 16 10 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 11 C 0.08 2.03 5.25 -17.82 -0.09 1.93 16 12 N -0.86 -21.98 10.92 55.43 0.61 -21.37 16 13 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 O -0.27 -6.82 8.46 -31.98 -0.27 -7.09 16 18 C 0.53 12.64 8.82 -88.84 -0.78 11.86 16 19 N -0.53 -12.54 10.11 -12.19 -0.12 -12.67 16 20 C 0.05 1.04 6.96 -84.65 -0.59 0.45 16 21 C 0.23 4.74 8.46 -155.41 -1.31 3.43 16 22 N -0.48 -8.84 10.38 -12.22 -0.13 -8.97 16 23 C 0.10 1.49 11.16 -17.48 -0.20 1.29 16 24 C -0.19 -2.60 9.80 -39.46 -0.39 -2.99 16 25 C -0.02 -0.27 5.94 -104.04 -0.62 -0.88 16 26 C -0.11 -1.50 10.07 36.00 0.36 -1.13 16 27 N -0.59 -12.34 6.24 -13.37 -0.08 -12.42 16 28 H 0.42 7.67 8.96 -40.82 -0.37 7.30 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 33 H 0.06 0.94 8.13 -51.92 -0.42 0.51 16 34 H 0.14 3.25 6.21 -51.93 -0.32 2.92 16 35 H 0.11 2.12 8.14 -51.93 -0.42 1.70 16 36 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 37 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.08 1.22 8.11 -51.93 -0.42 0.80 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -30.63 356.60 -8.88 -39.51 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.25 Total: 9.24 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: -3.22 Total: 12.77 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.27 Total: -55.43 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -1.04 Total: -26.23 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.63 -8.88 -39.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231056413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.256 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds