Wall clock time and date at job start Tue Mar 31 2020 14:24:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42897 * 109.46595 * 2 1
4 4 C 1.35194 * 116.99672 * 179.97438 * 3 2 1
5 5 N 1.30618 * 124.92796 * 180.02562 * 4 3 2
6 6 C 1.36170 * 108.72701 * 179.97438 * 5 4 3
7 7 C 1.39503 * 133.63473 * 180.02562 * 6 5 4
8 8 C 1.38337 * 119.67539 * 180.02562 * 7 6 5
9 9 N 1.40126 * 119.87518 * 179.97438 * 8 7 6
10 10 C 1.34775 * 120.00393 * 33.37358 * 9 8 7
11 11 O 1.21593 * 119.99875 * 5.31173 * 10 9 8
12 12 N 1.34781 * 120.00206 * 185.31761 * 10 9 8
13 13 C 1.46493 * 119.99962 * 179.97438 * 12 10 9
14 14 C 1.53001 * 109.47172 * 180.02562 * 13 12 10
15 15 C 1.50699 * 109.47236 * 180.02562 * 14 13 12
16 16 H 1.08000 * 120.00158 * 359.97438 * 15 14 13
17 17 C 1.37881 * 120.00200 * 179.97438 * 15 14 13
18 18 N 1.31514 * 119.99479 * 359.97438 * 17 15 14
19 19 Si 1.86795 * 120.00307 * 179.97438 * 17 15 14
20 20 H 1.48504 * 109.46824 * 59.99907 * 19 17 15
21 21 H 1.48492 * 109.47087 * 180.02562 * 19 17 15
22 22 H 1.48501 * 109.46952 * 300.00359 * 19 17 15
23 23 C 1.39225 * 120.24803 * 359.97438 * 8 7 6
24 24 C 1.37923 * 120.39392 * 0.02562 * 23 8 7
25 25 C 1.38594 * 119.98373 * 359.97438 * 24 23 8
26 26 O 1.34360 * 124.92908 * 359.97438 * 4 3 2
27 27 H 1.09000 * 109.47191 * 299.99513 * 1 2 3
28 28 H 1.09000 * 109.47239 * 59.99906 * 1 2 3
29 29 H 1.09008 * 109.46999 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47191 * 240.00487 * 2 1 3
31 31 H 1.09000 * 109.47239 * 120.00094 * 2 1 3
32 32 H 1.08002 * 120.15951 * 359.71614 * 7 6 5
33 33 H 0.97003 * 119.99647 * 213.36883 * 9 8 7
34 34 H 0.96999 * 119.99970 * 359.97438 * 12 10 9
35 35 H 1.09000 * 109.47317 * 300.00168 * 13 12 10
36 36 H 1.09003 * 109.47509 * 59.99985 * 13 12 10
37 37 H 1.09008 * 109.46875 * 299.99980 * 14 13 12
38 38 H 1.08997 * 109.46980 * 60.00043 * 14 13 12
39 39 H 0.97005 * 119.99541 * 179.97438 * 18 17 15
40 40 H 1.08001 * 119.80437 * 179.97438 * 23 8 7
41 41 H 1.07996 * 120.01072 * 180.02562 * 24 23 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0062 1.3473 0.0000
4 6 3.3465 1.5245 0.0005
5 7 3.9476 2.6842 0.0011
6 6 5.2937 2.4789 0.0021
7 6 6.3975 3.3319 0.0035
8 6 7.6744 2.7996 0.0037
9 7 8.7862 3.6526 0.0045
10 6 8.7274 4.8358 0.6471
11 8 7.7464 5.1215 1.3063
12 7 9.7558 5.7025 0.5589
13 6 9.6916 6.9888 1.2569
14 6 10.9765 7.7766 0.9936
15 6 10.9107 9.0997 1.7122
16 1 10.0394 9.3534 2.2977
17 6 11.9629 9.9862 1.6221
18 7 13.0240 9.6769 0.9095
19 14 11.8811 11.6264 2.5122
20 1 11.7341 11.3911 3.9711
21 1 13.1281 12.3910 2.2567
22 1 10.7155 12.4013 2.0159
23 6 7.8590 1.4196 0.0031
24 6 6.7723 0.5703 0.0018
25 6 5.4874 1.0895 0.0015
26 8 4.2535 0.5332 0.0016
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 1.8934 -0.5138 -0.8900
31 1 1.8934 -0.5138 0.8900
32 1 6.2559 4.4026 -0.0007
33 1 9.5982 3.3913 -0.4574
34 1 10.5385 5.4744 0.0333
35 1 8.8361 7.5575 0.8927
36 1 9.5838 6.8162 2.3278
37 1 11.8324 7.2080 1.3576
38 1 11.0838 7.9493 -0.0772
39 1 13.7641 10.3008 0.8458
40 1 8.8590 1.0118 0.0029
41 1 6.9227 -0.4992 0.0018
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001311221228.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:24:43
Heat of formation + Delta-G solvation = -24.611105 kcal
Electronic energy + Delta-G solvation = -24982.522057 eV
Core-core repulsion = 21057.850203 eV
Total energy + Delta-G solvation = -3924.671854 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.136 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-43.43152 -40.38704 -39.43637 -37.88954 -35.19475 -34.90409 -34.18039 -32.85964
-32.26682 -30.36622 -29.66176 -28.52285 -24.95694 -24.40734 -23.66774 -22.59554
-22.18513 -21.13793 -20.72042 -19.44703 -18.32271 -18.21881 -17.79130 -17.27899
-16.36725 -15.96028 -15.63438 -15.51480 -15.17523 -14.61821 -14.51390 -14.29197
-14.10769 -13.70294 -13.47508 -13.29553 -13.27354 -13.11285 -12.65961 -12.34793
-12.28389 -11.89689 -11.82313 -11.22374 -11.11217 -11.00552 -10.66896 -10.63286
-10.40433 -10.19024 -9.98365 -9.59722 -9.30113 -8.64253 -8.43361 -8.40853
-8.08326 -6.10073 -4.12830 0.57591 1.02407 1.55992 2.24042 2.37639
2.76723 3.24015 3.31952 3.35621 3.39432 3.65295 4.19043 4.25810
4.28133 4.37233 4.40946 4.53457 4.60729 4.81272 4.86097 5.00966
5.06535 5.17500 5.27241 5.27790 5.47016 5.72053 5.88266 5.95426
6.02722 6.15805 6.26076 6.34479 6.44631 6.71074 6.75282 6.85344
7.03756 7.47888 7.52414 7.59869 7.88386 8.14944 8.29329 8.75610
8.92981 9.52067 11.01448
Molecular weight = 319.14amu
Principal moments of inertia in cm(-1)
A = 0.027639 B = 0.001948 C = 0.001834
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1012.830893 B =14373.164794 C =15263.594047
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.050 3.950
3 O -0.245 6.245
4 C 0.427 3.573
5 N -0.470 5.470
6 C 0.070 3.930
7 C -0.072 4.072
8 C 0.185 3.815
9 N -0.690 5.690
10 C 0.695 3.305
11 O -0.575 6.575
12 N -0.730 5.730
13 C 0.138 3.862
14 C 0.013 3.987
15 C -0.522 4.522
16 H 0.060 0.940
17 C 0.059 3.941
18 N -0.894 5.894
19 Si 0.898 3.102
20 H -0.276 1.276
21 H -0.287 1.287
22 H -0.275 1.275
23 C -0.125 4.125
24 C -0.064 4.064
25 C -0.020 4.020
26 O -0.243 6.243
27 H 0.072 0.928
28 H 0.072 0.928
29 H 0.087 0.913
30 H 0.075 0.925
31 H 0.075 0.925
32 H 0.154 0.846
33 H 0.409 0.591
34 H 0.396 0.604
35 H 0.058 0.942
36 H 0.057 0.943
37 H 0.023 0.977
38 H 0.023 0.977
39 H 0.262 0.738
40 H 0.145 0.855
41 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.317 -25.497 -5.504 30.767
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.025 4.025
3 O -0.152 6.152
4 C 0.179 3.821
5 N -0.216 5.216
6 C -0.042 4.042
7 C -0.095 4.095
8 C 0.087 3.913
9 N -0.338 5.338
10 C 0.395 3.605
11 O -0.452 6.452
12 N -0.383 5.383
13 C 0.015 3.985
14 C -0.025 4.025
15 C -0.561 4.561
16 H 0.078 0.922
17 C -0.142 4.142
18 N -0.533 5.533
19 Si 0.725 3.275
20 H -0.201 1.201
21 H -0.213 1.213
22 H -0.201 1.201
23 C -0.146 4.146
24 C -0.084 4.084
25 C -0.069 4.069
26 O -0.139 6.139
27 H 0.091 0.909
28 H 0.091 0.909
29 H 0.106 0.894
30 H 0.093 0.907
31 H 0.093 0.907
32 H 0.171 0.829
33 H 0.245 0.755
34 H 0.229 0.771
35 H 0.076 0.924
36 H 0.075 0.925
37 H 0.041 0.959
38 H 0.041 0.959
39 H 0.072 0.928
40 H 0.163 0.837
41 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges -17.523 -24.388 -4.928 30.432
hybrid contribution 1.063 -0.215 0.016 1.085
sum -16.460 -24.603 -4.912 30.006
Atomic orbital electron populations
1.21822 0.91160 1.03666 1.04299 1.23084 0.96874 0.79284 1.03212
1.86363 1.09253 1.31014 1.88591 1.23357 0.83287 0.81563 0.93884
1.70948 1.04320 1.20165 1.26192 1.19347 0.89956 0.91615 1.03281
1.20200 0.87661 1.01125 1.00471 1.17095 0.86344 0.88815 0.99034
1.42721 1.15513 1.18656 1.56917 1.16086 0.84379 0.79900 0.80115
1.90954 1.32666 1.76668 1.44868 1.45578 1.19105 1.19143 1.54446
1.21696 1.01483 0.79885 0.95404 1.19333 0.90671 0.94618 0.97844
1.21004 1.03200 1.01020 1.30887 0.92214 1.24988 0.95264 0.98639
0.95342 1.69944 1.06673 1.36536 1.40143 0.86558 0.77353 0.83349
0.80203 1.20102 1.21257 1.20088 1.20681 0.98894 0.90813 1.04219
1.19492 0.85993 1.00373 1.02502 1.19845 0.84194 0.92540 1.10367
1.84405 1.15140 1.37240 1.77133 0.90881 0.90916 0.89405 0.90679
0.90657 0.82865 0.75504 0.77070 0.92392 0.92450 0.95896 0.95861
0.92795 0.83740 0.84359
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.58 10.28 37.16 0.38 -0.20 16
2 C 0.05 0.30 6.35 37.16 0.24 0.54 16
3 O -0.24 -2.59 10.18 -40.57 -0.41 -3.00 16
4 C 0.43 5.58 8.93 52.25 0.47 6.04 16
5 N -0.47 -7.51 11.37 -12.81 -0.15 -7.65 16
6 C 0.07 1.06 7.23 -84.70 -0.61 0.44 16
7 C -0.07 -1.11 8.69 -39.07 -0.34 -1.45 16
8 C 0.18 2.33 6.28 -83.66 -0.53 1.81 16
9 N -0.69 -8.39 5.35 -14.22 -0.08 -8.46 16
10 C 0.69 11.63 8.30 -86.92 -0.72 10.91 16
11 O -0.57 -11.98 14.03 5.28 0.07 -11.90 16
12 N -0.73 -12.17 5.56 -65.23 -0.36 -12.53 16
13 C 0.14 2.87 5.61 -4.05 -0.02 2.85 16
14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16
15 C -0.52 -14.35 9.11 -34.44 -0.31 -14.67 16
16 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16
17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
18 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16
19 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16
20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
23 C -0.13 -1.17 9.94 -39.33 -0.39 -1.56 16
24 C -0.06 -0.61 10.05 -39.57 -0.40 -1.01 16
25 C -0.02 -0.25 7.42 -38.68 -0.29 -0.54 16
26 O -0.24 -2.90 10.21 -20.70 -0.21 -3.11 16
27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16
28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16
29 H 0.09 0.15 8.14 -51.92 -0.42 -0.27 16
30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
31 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16
32 H 0.15 2.72 6.42 -52.49 -0.34 2.38 16
33 H 0.41 3.37 8.83 -40.82 -0.36 3.01 16
34 H 0.40 5.47 8.49 -40.82 -0.35 5.12 16
35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16
36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
37 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16
38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16
39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16
40 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16
41 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16
LS Contribution 358.77 15.07 5.41 5.41
Total: -1.00 -34.78 358.77 -8.01 -42.79
By element:
Atomic # 1 Polarization: 7.62 SS G_CDS: -5.24 Total: 2.38 kcal
Atomic # 6 Polarization: 7.65 SS G_CDS: -2.76 Total: 4.89 kcal
Atomic # 7 Polarization: -53.90 SS G_CDS: 0.15 Total: -53.75 kcal
Atomic # 8 Polarization: -17.47 SS G_CDS: -0.55 Total: -18.02 kcal
Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -34.78 -8.01 -42.79 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001311221228.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.178 kcal
(2) G-P(sol) polarization free energy of solvation -34.777 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.598 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.611 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds