Wall clock time and date at job start Tue Mar 31 2020 14:24:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42897 * 109.46595 * 2 1
4 4 C 1.35194 * 116.99672 * 179.97438 * 3 2 1
5 5 N 1.30618 * 124.92796 * 180.02562 * 4 3 2
6 6 C 1.36170 * 108.72701 * 179.97438 * 5 4 3
7 7 C 1.39503 * 133.63473 * 180.02562 * 6 5 4
8 8 C 1.38337 * 119.67539 * 180.02562 * 7 6 5
9 9 N 1.40126 * 119.87518 * 179.97438 * 8 7 6
10 10 C 1.34775 * 120.00393 * 33.37358 * 9 8 7
11 11 O 1.21593 * 119.99875 * 5.31173 * 10 9 8
12 12 N 1.34781 * 120.00206 * 185.31761 * 10 9 8
13 13 C 1.46493 * 119.99962 * 179.97438 * 12 10 9
14 14 C 1.53001 * 109.47172 * 180.02562 * 13 12 10
15 15 C 1.50699 * 109.47236 * 180.02562 * 14 13 12
16 16 H 1.08000 * 120.00158 * 359.97438 * 15 14 13
17 17 C 1.37881 * 120.00200 * 179.97438 * 15 14 13
18 18 N 1.31514 * 119.99479 * 359.97438 * 17 15 14
19 19 Si 1.86795 * 120.00307 * 179.97438 * 17 15 14
20 20 H 1.48504 * 109.46824 * 59.99907 * 19 17 15
21 21 H 1.48492 * 109.47087 * 180.02562 * 19 17 15
22 22 H 1.48501 * 109.46952 * 300.00359 * 19 17 15
23 23 C 1.39225 * 120.24803 * 359.97438 * 8 7 6
24 24 C 1.37923 * 120.39392 * 0.02562 * 23 8 7
25 25 C 1.38594 * 119.98373 * 359.97438 * 24 23 8
26 26 O 1.34360 * 124.92908 * 359.97438 * 4 3 2
27 27 H 1.09000 * 109.47191 * 299.99513 * 1 2 3
28 28 H 1.09000 * 109.47239 * 59.99906 * 1 2 3
29 29 H 1.09008 * 109.46999 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47191 * 240.00487 * 2 1 3
31 31 H 1.09000 * 109.47239 * 120.00094 * 2 1 3
32 32 H 1.08002 * 120.15951 * 359.71614 * 7 6 5
33 33 H 0.97003 * 119.99647 * 213.36883 * 9 8 7
34 34 H 0.96999 * 119.99970 * 359.97438 * 12 10 9
35 35 H 1.09000 * 109.47317 * 300.00168 * 13 12 10
36 36 H 1.09003 * 109.47509 * 59.99985 * 13 12 10
37 37 H 1.09008 * 109.46875 * 299.99980 * 14 13 12
38 38 H 1.08997 * 109.46980 * 60.00043 * 14 13 12
39 39 H 0.97005 * 119.99541 * 179.97438 * 18 17 15
40 40 H 1.08001 * 119.80437 * 179.97438 * 23 8 7
41 41 H 1.07996 * 120.01072 * 180.02562 * 24 23 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0062 1.3473 0.0000
4 6 3.3465 1.5245 0.0005
5 7 3.9476 2.6842 0.0011
6 6 5.2937 2.4789 0.0021
7 6 6.3975 3.3319 0.0035
8 6 7.6744 2.7996 0.0037
9 7 8.7862 3.6526 0.0045
10 6 8.7274 4.8358 0.6471
11 8 7.7464 5.1215 1.3063
12 7 9.7558 5.7025 0.5589
13 6 9.6916 6.9888 1.2569
14 6 10.9765 7.7766 0.9936
15 6 10.9107 9.0997 1.7122
16 1 10.0394 9.3534 2.2977
17 6 11.9629 9.9862 1.6221
18 7 13.0240 9.6769 0.9095
19 14 11.8811 11.6264 2.5122
20 1 11.7341 11.3911 3.9711
21 1 13.1281 12.3910 2.2567
22 1 10.7155 12.4013 2.0159
23 6 7.8590 1.4196 0.0031
24 6 6.7723 0.5703 0.0018
25 6 5.4874 1.0895 0.0015
26 8 4.2535 0.5332 0.0016
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 1.8934 -0.5138 -0.8900
31 1 1.8934 -0.5138 0.8900
32 1 6.2559 4.4026 -0.0007
33 1 9.5982 3.3913 -0.4574
34 1 10.5385 5.4744 0.0333
35 1 8.8361 7.5575 0.8927
36 1 9.5838 6.8162 2.3278
37 1 11.8324 7.2080 1.3576
38 1 11.0838 7.9493 -0.0772
39 1 13.7641 10.3008 0.8458
40 1 8.8590 1.0118 0.0029
41 1 6.9227 -0.4992 0.0018
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001311221228.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:24:43
Heat of formation + Delta-G solvation = -52.738789 kcal
Electronic energy + Delta-G solvation = -24983.741765 eV
Core-core repulsion = 21057.850203 eV
Total energy + Delta-G solvation = -3925.891562 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.136 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-44.38324 -41.61627 -40.25812 -38.94311 -36.66748 -36.10956 -35.31906 -34.78454
-32.75617 -31.79642 -30.90961 -29.65729 -26.77195 -25.12104 -24.70275 -23.43852
-23.20998 -22.83114 -22.06116 -20.32922 -19.49776 -19.30118 -18.66887 -18.40587
-18.27548 -16.89825 -16.64722 -16.58993 -16.50136 -16.18885 -15.77654 -15.36437
-15.24646 -15.18377 -14.64292 -14.27607 -14.09092 -13.99325 -13.71916 -13.59022
-13.21458 -12.95841 -12.93714 -12.65847 -12.57128 -12.53381 -12.24066 -11.83451
-11.75984 -11.60500 -11.47126 -11.27683 -11.10776 -10.58667 -10.09271 -9.39775
-9.12160 -8.22927 -6.32628 -0.33758 0.04434 0.69230 1.29105 1.41678
1.44877 1.46060 1.53358 1.68299 1.97852 2.41932 2.61641 3.12141
3.13862 3.41784 3.52580 3.81495 3.88683 3.97557 4.10626 4.15450
4.20944 4.37658 4.45811 4.52098 4.67153 4.83765 4.84649 4.88443
5.02063 5.07925 5.11974 5.15144 5.19460 5.27198 5.49602 5.59600
5.61027 5.75016 5.79173 5.95288 6.18086 6.52060 6.79907 6.99049
7.36315 7.44838 8.88495
Molecular weight = 319.14amu
Principal moments of inertia in cm(-1)
A = 0.027639 B = 0.001948 C = 0.001834
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1012.830893 B =14373.164794 C =15263.594047
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.039 3.961
3 O -0.255 6.255
4 C 0.435 3.565
5 N -0.523 5.523
6 C 0.040 3.960
7 C -0.106 4.106
8 C 0.177 3.823
9 N -0.666 5.666
10 C 0.696 3.304
11 O -0.619 6.619
12 N -0.722 5.722
13 C 0.159 3.841
14 C 0.024 3.976
15 C -0.548 4.548
16 H 0.057 0.943
17 C 0.010 3.990
18 N -0.924 5.924
19 Si 0.963 3.037
20 H -0.269 1.269
21 H -0.280 1.280
22 H -0.271 1.271
23 C -0.104 4.104
24 C -0.046 4.046
25 C -0.027 4.027
26 O -0.231 6.231
27 H 0.067 0.933
28 H 0.069 0.931
29 H 0.115 0.885
30 H 0.088 0.912
31 H 0.086 0.914
32 H 0.114 0.886
33 H 0.431 0.569
34 H 0.412 0.588
35 H 0.044 0.956
36 H 0.046 0.954
37 H 0.013 0.987
38 H 0.011 0.989
39 H 0.266 0.734
40 H 0.193 0.807
41 H 0.185 0.815
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.764 -28.309 -5.603 32.884
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.035 4.035
3 O -0.163 6.163
4 C 0.187 3.813
5 N -0.270 5.270
6 C -0.071 4.071
7 C -0.129 4.129
8 C 0.080 3.920
9 N -0.317 5.317
10 C 0.397 3.603
11 O -0.499 6.499
12 N -0.376 5.376
13 C 0.034 3.966
14 C -0.014 4.014
15 C -0.587 4.587
16 H 0.076 0.924
17 C -0.190 4.190
18 N -0.563 5.563
19 Si 0.787 3.213
20 H -0.194 1.194
21 H -0.205 1.205
22 H -0.196 1.196
23 C -0.124 4.124
24 C -0.064 4.064
25 C -0.076 4.076
26 O -0.127 6.127
27 H 0.086 0.914
28 H 0.088 0.912
29 H 0.134 0.866
30 H 0.107 0.893
31 H 0.104 0.896
32 H 0.133 0.867
33 H 0.272 0.728
34 H 0.248 0.752
35 H 0.062 0.938
36 H 0.065 0.935
37 H 0.031 0.969
38 H 0.029 0.971
39 H 0.074 0.926
40 H 0.210 0.790
41 H 0.202 0.798
Dipole moment (debyes) X Y Z Total
from point charges -16.954 -27.264 -5.069 32.504
hybrid contribution 0.808 0.541 0.011 0.972
sum -16.146 -26.723 -5.058 31.629
Atomic orbital electron populations
1.21883 0.89465 1.05294 1.03897 1.23532 0.98135 0.77416 1.04407
1.86410 1.07810 1.33932 1.88170 1.23367 0.84144 0.81299 0.92504
1.70832 1.05485 1.22272 1.28438 1.19469 0.89644 0.93260 1.04740
1.20035 0.89554 0.99522 1.03775 1.17336 0.85085 0.90332 0.99235
1.42365 1.16407 1.16961 1.55930 1.16154 0.83364 0.80849 0.79982
1.90943 1.34247 1.77814 1.46857 1.45182 1.20028 1.17955 1.54469
1.21141 0.99105 0.81245 0.95063 1.19136 0.91735 0.93993 0.96535
1.21437 1.03335 1.02606 1.31315 0.92432 1.25818 0.94878 1.02207
0.96049 1.70041 1.07265 1.37831 1.41197 0.85537 0.77594 0.78998
0.79149 1.19422 1.20514 1.19578 1.21153 1.01124 0.88643 1.01513
1.20097 0.84140 1.02618 0.99584 1.20303 0.85371 0.91441 1.10498
1.84408 1.14867 1.36480 1.76944 0.91389 0.91226 0.86642 0.89332
0.89592 0.86747 0.72834 0.75172 0.93778 0.93518 0.96862 0.97065
0.92557 0.78970 0.79792
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.93 10.28 71.98 0.74 -0.19 16
2 C 0.04 0.42 6.35 71.98 0.46 0.87 16
3 O -0.26 -5.44 10.18 -62.48 -0.64 -6.08 16
4 C 0.43 11.56 8.93 130.42 1.16 12.73 16
5 N -0.52 -17.73 11.37 -422.78 -4.81 -22.54 16
6 C 0.04 1.26 7.23 39.27 0.28 1.54 16
7 C -0.11 -3.44 8.69 22.60 0.20 -3.25 16
8 C 0.18 4.27 6.28 38.08 0.24 4.51 16
9 N -0.67 -15.32 5.35 -317.15 -1.70 -17.02 16
10 C 0.70 23.47 8.30 179.05 1.49 24.96 16
11 O -0.62 -26.94 14.03 -4.01 -0.06 -27.00 16
12 N -0.72 -24.11 5.56 -478.53 -2.66 -26.77 16
13 C 0.16 6.78 5.61 86.38 0.48 7.26 16
14 C 0.02 1.17 5.09 29.85 0.15 1.32 16
15 C -0.55 -30.55 9.11 25.60 0.23 -30.32 16
16 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16
17 C 0.01 0.53 5.46 84.66 0.46 0.99 16
18 N -0.92 -53.59 13.29 21.45 0.28 -53.31 16
19 Si 0.96 43.69 29.54 68.60 2.03 45.72 16
20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16
22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
23 C -0.10 -1.52 9.94 22.43 0.22 -1.30 16
24 C -0.05 -0.68 10.05 22.28 0.22 -0.45 16
25 C -0.03 -0.64 7.42 22.85 0.17 -0.47 16
26 O -0.23 -5.25 10.21 8.63 0.09 -5.16 16
27 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16
28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16
29 H 0.12 0.11 8.14 -2.38 -0.02 0.09 16
30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16
31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16
32 H 0.11 4.52 6.42 -2.91 -0.02 4.50 16
33 H 0.43 5.89 8.83 -92.71 -0.82 5.07 16
34 H 0.41 11.03 8.49 -92.71 -0.79 10.25 16
35 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16
36 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16
37 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16
38 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16
39 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16
40 H 0.19 1.01 8.06 -2.91 -0.02 0.99 16
41 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16
Total: -1.00 -80.01 358.77 -1.46 -81.47
By element:
Atomic # 1 Polarization: 12.99 SS G_CDS: -0.52 Total: 12.47 kcal
Atomic # 6 Polarization: 11.70 SS G_CDS: 6.51 Total: 18.22 kcal
Atomic # 7 Polarization: -110.75 SS G_CDS: -8.88 Total: -119.63 kcal
Atomic # 8 Polarization: -37.63 SS G_CDS: -0.60 Total: -38.24 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal
Total: -80.01 -1.46 -81.47 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001311221228.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.733 kcal
(2) G-P(sol) polarization free energy of solvation -80.007 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.274 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.465 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.472 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.739 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds