Wall clock time and date at job start Tue Mar 31 2020 14:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47148 * 2 1 4 4 C 1.50698 * 109.47185 * 120.00324 * 2 1 3 5 5 H 1.08005 * 120.00424 * 94.91533 * 4 2 1 6 6 C 1.37884 * 120.00184 * 274.91325 * 4 2 1 7 7 N 1.31513 * 120.00148 * 174.95969 * 6 4 2 8 8 Si 1.86797 * 119.99746 * 354.96152 * 6 4 2 9 9 H 1.48507 * 109.46983 * 275.01945 * 8 6 4 10 10 H 1.48501 * 109.47419 * 35.01605 * 8 6 4 11 11 H 1.48499 * 109.47182 * 155.02297 * 8 6 4 12 12 N 1.46501 * 109.47401 * 240.00297 * 2 1 3 13 13 C 1.34774 * 119.99698 * 84.99635 * 12 2 1 14 14 O 1.21353 * 120.00246 * 0.02562 * 13 12 2 15 15 C 1.49357 * 119.99816 * 180.02562 * 13 12 2 16 16 O 1.21378 * 120.00028 * 359.97438 * 15 13 12 17 17 N 1.34773 * 120.00394 * 180.02562 * 15 13 12 18 18 C 1.39723 * 120.00352 * 185.34528 * 17 15 13 19 19 C 1.38923 * 120.07585 * 214.50658 * 18 17 15 20 20 C 1.38105 * 119.92470 * 179.77295 * 19 18 17 21 21 C 1.38296 * 120.06941 * 0.48121 * 20 19 18 22 22 C 1.50702 * 119.92166 * 179.76937 * 21 20 19 23 23 C 1.50696 * 109.47279 * 270.02396 * 22 21 20 24 24 N 1.34778 * 120.00385 * 179.97438 * 23 22 21 25 25 O 1.21286 * 119.99725 * 0.02562 * 23 22 21 26 26 C 1.38289 * 120.15701 * 359.79344 * 21 20 19 27 27 C 1.38102 * 120.07536 * 359.95618 * 26 21 20 28 28 H 1.08996 * 109.46809 * 54.99036 * 1 2 3 29 29 H 1.08993 * 109.47221 * 174.99348 * 1 2 3 30 30 H 1.09001 * 109.46823 * 294.99158 * 1 2 3 31 31 H 0.96999 * 119.99610 * 179.97438 * 7 6 4 32 32 H 0.96999 * 119.99681 * 265.00280 * 12 2 1 33 33 H 0.97003 * 119.99392 * 5.34191 * 17 15 13 34 34 H 1.08003 * 120.03903 * 359.97438 * 19 18 17 35 35 H 1.07990 * 119.96461 * 180.25371 * 20 19 18 36 36 H 1.09001 * 109.47010 * 30.02210 * 22 21 20 37 37 H 1.09002 * 109.47162 * 150.02012 * 22 21 20 38 38 H 0.97007 * 119.99403 * 359.97438 * 24 23 22 39 39 H 0.96991 * 120.00381 * 179.97438 * 24 23 22 40 40 H 1.07998 * 119.96656 * 179.97438 * 26 21 20 41 41 H 1.08001 * 120.03804 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.2879 -1.7587 1.1823 6 6 2.1657 -0.0223 2.4177 7 7 2.5087 -0.6627 3.5140 8 14 1.8593 1.8197 2.4691 9 1 3.0982 2.5387 2.0774 10 1 0.7664 2.1662 1.5253 11 1 1.4698 2.2185 3.8455 12 7 2.0184 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8588 1.1594 -2.4114 15 6 2.6444 -0.7222 -3.5768 16 8 2.9332 -1.8999 -3.5223 17 7 2.7736 -0.0498 -4.7376 18 6 3.1313 -0.7312 -5.9037 19 6 3.9306 -0.1105 -6.8555 20 6 4.2861 -0.7887 -8.0048 21 6 3.8391 -2.0807 -8.2134 22 6 4.2248 -2.8157 -9.4712 23 6 3.1961 -2.5548 -10.5410 24 7 3.3349 -3.1129 -11.7599 25 8 2.2437 -1.8417 -10.3055 26 6 3.0386 -2.6995 -7.2707 27 6 2.6836 -2.0291 -6.1168 28 1 -0.3633 0.5896 -0.8417 29 1 -0.3633 -1.0237 -0.0897 30 1 -0.3633 0.4342 0.9315 31 1 2.6029 -0.1784 4.3492 32 1 2.2490 -1.6317 -1.1526 33 1 2.6182 0.9074 -4.7634 34 1 4.2763 0.9001 -6.6952 35 1 4.9108 -0.3082 -8.7431 36 1 5.1997 -2.4665 -9.8116 37 1 4.2731 -3.8853 -9.2667 38 1 4.0972 -3.6824 -11.9486 39 1 2.6726 -2.9453 -12.4484 40 1 2.6910 -3.7084 -7.4369 41 1 2.0587 -2.5131 -5.3808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320712230.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:52 Heat of formation + Delta-G solvation = -113.778333 kcal Electronic energy + Delta-G solvation = -25382.282028 eV Core-core repulsion = 21453.743592 eV Total energy + Delta-G solvation = -3928.538435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.13335 -40.86993 -40.14036 -39.10423 -37.13381 -36.13306 -34.58639 -34.42342 -32.66119 -31.94895 -31.77903 -28.48632 -27.34529 -25.97464 -24.06647 -23.23575 -22.19083 -21.39849 -21.19249 -20.25051 -18.81580 -18.50913 -18.27476 -17.65523 -17.48078 -17.14995 -17.04323 -16.37227 -16.17220 -15.91754 -15.48036 -15.18319 -14.99576 -14.81448 -14.67452 -14.56528 -14.37169 -14.24374 -13.64871 -13.40661 -13.16906 -13.01382 -12.91448 -12.82440 -12.47648 -12.34373 -12.10447 -11.82768 -11.46963 -11.32379 -10.98328 -10.87285 -10.70040 -10.56844 -10.11498 -9.87928 -9.12546 -8.39355 -6.47610 -0.08775 0.46205 0.57544 1.24893 1.34825 1.36667 1.46616 1.74195 2.06262 2.27627 2.58807 2.63381 2.98755 3.02423 3.40560 3.74158 3.88319 4.03210 4.31231 4.32834 4.37123 4.44320 4.48706 4.67273 4.72288 4.72706 4.73156 4.98459 5.06103 5.18372 5.21122 5.28069 5.40055 5.40667 5.48104 5.60915 5.84521 5.97888 6.01700 6.09569 6.47434 6.56189 6.57213 6.70473 6.93385 7.20226 7.45759 8.75582 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.037542 B = 0.002196 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.643177 B =12747.313098 C =12914.975500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.236 3.764 3 H 0.042 0.958 4 C -0.536 4.536 5 H 0.053 0.947 6 C 0.031 3.969 7 N -0.929 5.929 8 Si 0.928 3.072 9 H -0.272 1.272 10 H -0.243 1.243 11 H -0.277 1.277 12 N -0.668 5.668 13 C 0.500 3.500 14 O -0.553 6.553 15 C 0.515 3.485 16 O -0.518 6.518 17 N -0.636 5.636 18 C 0.121 3.879 19 C -0.140 4.140 20 C -0.089 4.089 21 C -0.086 4.086 22 C -0.095 4.095 23 C 0.513 3.487 24 N -0.840 5.840 25 O -0.592 6.592 26 C -0.096 4.096 27 C -0.139 4.139 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.272 0.728 32 H 0.411 0.589 33 H 0.429 0.571 34 H 0.148 0.852 35 H 0.155 0.845 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.420 0.580 39 H 0.404 0.596 40 H 0.138 0.862 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.723 -3.744 -31.842 32.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.133 3.867 3 H 0.059 0.941 4 C -0.574 4.574 5 H 0.071 0.929 6 C -0.169 4.169 7 N -0.567 5.567 8 Si 0.752 3.248 9 H -0.197 1.197 10 H -0.166 1.166 11 H -0.203 1.203 12 N -0.318 5.318 13 C 0.280 3.720 14 O -0.432 6.432 15 C 0.297 3.703 16 O -0.393 6.393 17 N -0.283 5.283 18 C 0.027 3.973 19 C -0.160 4.160 20 C -0.108 4.108 21 C -0.087 4.087 22 C -0.135 4.135 23 C 0.299 3.701 24 N -0.404 5.404 25 O -0.472 6.472 26 C -0.114 4.114 27 C -0.159 4.159 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.247 0.753 33 H 0.269 0.731 34 H 0.166 0.834 35 H 0.172 0.828 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.251 0.749 39 H 0.235 0.765 40 H 0.156 0.844 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.198 -3.272 -31.232 31.830 hybrid contribution -0.144 0.426 0.520 0.688 sum 5.053 -2.846 -30.712 31.254 Atomic orbital electron populations 1.22217 0.96367 1.01372 1.00596 1.19069 0.92435 0.93374 0.81822 0.94055 1.21131 1.45488 0.97540 0.93248 0.92914 1.25631 0.93667 1.02778 0.94848 1.69988 1.48003 1.38289 1.00438 0.86056 0.80185 0.80313 0.78291 1.19716 1.16606 1.20280 1.46223 1.61930 1.15019 1.08583 1.20074 0.80064 0.87000 0.84910 1.90701 1.51447 1.15930 1.85159 1.20231 0.78518 0.86893 0.84638 1.90756 1.47457 1.16088 1.85032 1.43087 1.66139 1.13376 1.05668 1.17982 0.98614 0.93755 0.86908 1.21162 0.98112 1.01906 0.94808 1.21140 0.99366 0.93679 0.96570 1.19643 0.98330 0.95034 0.95733 1.20722 0.99374 1.03751 0.89624 1.20987 0.86301 0.78456 0.84380 1.43761 1.30789 1.52634 1.13192 1.90791 1.34719 1.39915 1.81821 1.21064 0.97160 1.00554 0.92644 1.21125 1.01402 0.94656 0.98713 0.93753 0.92389 0.92358 0.91892 0.75252 0.73111 0.83438 0.82787 0.84433 0.85213 0.74868 0.76472 0.84383 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.21 9.10 71.98 0.66 -5.55 16 2 C 0.24 11.08 2.12 44.24 0.09 11.17 16 3 H 0.04 2.04 5.34 -2.39 -0.01 2.03 16 4 C -0.54 -29.22 9.06 25.60 0.23 -28.98 16 5 H 0.05 3.12 8.02 -2.91 -0.02 3.09 16 6 C 0.03 1.75 5.47 84.66 0.46 2.22 16 7 N -0.93 -55.40 13.96 21.45 0.30 -55.10 16 8 Si 0.93 43.02 26.19 68.60 1.80 44.81 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.24 -10.59 6.14 99.48 0.61 -9.98 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 N -0.67 -27.89 5.06 -447.54 -2.27 -30.16 16 13 C 0.50 19.30 7.85 87.24 0.68 19.99 16 14 O -0.55 -22.87 16.15 -3.26 -0.05 -22.92 16 15 C 0.52 17.48 7.61 87.24 0.66 18.14 16 16 O -0.52 -19.15 14.27 -3.33 -0.05 -19.20 16 17 N -0.64 -17.73 5.32 -304.84 -1.62 -19.35 16 18 C 0.12 3.17 6.25 38.21 0.24 3.41 16 19 C -0.14 -2.87 9.97 22.40 0.22 -2.64 16 20 C -0.09 -1.52 9.69 22.25 0.22 -1.30 16 21 C -0.09 -1.48 4.38 -19.84 -0.09 -1.57 16 22 C -0.10 -0.76 5.83 29.10 0.17 -0.59 16 23 C 0.51 6.66 8.09 87.66 0.71 7.37 16 24 N -0.84 -3.60 8.87 -173.53 -1.54 -5.14 16 25 O -0.59 -14.84 16.87 -3.05 -0.05 -14.89 16 26 C -0.10 -2.06 9.69 22.25 0.22 -1.85 16 27 C -0.14 -3.79 8.65 22.40 0.19 -3.60 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.06 2.46 6.73 -2.39 -0.02 2.45 16 31 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.41 16.56 8.03 -92.71 -0.74 15.82 16 33 H 0.43 10.43 8.30 -92.71 -0.77 9.66 16 34 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.15 1.63 8.06 -2.92 -0.02 1.61 16 36 H 0.14 0.21 8.08 -2.39 -0.02 0.19 16 37 H 0.13 0.42 8.08 -2.39 -0.02 0.40 16 38 H 0.42 -1.34 8.83 -92.70 -0.82 -2.16 16 39 H 0.40 1.69 8.93 -92.72 -0.83 0.86 16 40 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.11 3.50 6.53 -2.91 -0.02 3.48 16 Total: -1.00 -77.81 356.44 -0.94 -78.75 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -2.13 Total: 26.99 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 4.67 Total: 16.21 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -5.13 Total: -109.75 kcal Atomic # 8 Polarization: -56.86 SS G_CDS: -0.15 Total: -57.01 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.80 Total: 44.81 kcal Total: -77.81 -0.94 -78.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320712230.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.030 kcal (2) G-P(sol) polarization free energy of solvation -77.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds