Wall clock time and date at job start Tue Mar 31 2020 14:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34775 * 120.00165 * 2 1 4 4 O 1.21588 * 119.99916 * 359.97438 * 3 2 1 5 5 C 1.47607 * 120.00145 * 180.02562 * 3 2 1 6 6 C 1.39750 * 120.07073 * 179.97438 * 5 3 2 7 7 C 1.37660 * 119.93151 * 180.02562 * 6 5 3 8 8 C 1.39173 * 120.07025 * 359.97438 * 7 6 5 9 9 N 1.39272 * 119.93483 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00292 * 146.53656 * 9 8 7 11 11 O 1.21362 * 119.99865 * 354.72339 * 10 9 8 12 12 C 1.49364 * 120.00120 * 174.72603 * 10 9 8 13 13 O 1.21362 * 120.00015 * 359.97438 * 12 10 9 14 14 N 1.34775 * 120.00120 * 180.02562 * 12 10 9 15 15 C 1.46499 * 119.99997 * 179.97438 * 14 12 10 16 16 H 1.08997 * 109.47155 * 325.00263 * 15 14 12 17 17 C 1.53001 * 109.47041 * 84.99961 * 15 14 12 18 18 C 1.50700 * 109.47049 * 204.99621 * 15 14 12 19 19 H 1.08001 * 120.00143 * 0.02562 * 18 15 14 20 20 C 1.37880 * 119.99971 * 179.97438 * 18 15 14 21 21 N 1.31515 * 120.00047 * 0.02562 * 20 18 15 22 22 Si 1.86795 * 119.99962 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47305 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47169 * 300.00170 * 22 20 18 25 25 H 1.48505 * 109.47446 * 60.00044 * 22 20 18 26 26 C 1.39182 * 120.13442 * 0.27686 * 8 7 6 27 27 C 1.37660 * 120.07160 * 359.45155 * 26 8 7 28 28 H 1.08998 * 109.46965 * 60.00125 * 1 2 3 29 29 H 1.09001 * 109.46985 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47115 * 300.00634 * 1 2 3 31 31 H 0.97000 * 119.99915 * 179.97438 * 2 1 3 32 32 H 1.08006 * 120.03293 * 359.97438 * 6 5 3 33 33 H 1.08006 * 119.96268 * 179.97438 * 7 6 5 34 34 H 0.97001 * 119.99568 * 326.53659 * 9 8 7 35 35 H 0.96997 * 120.00028 * 359.97438 * 14 12 10 36 36 H 1.09005 * 109.47363 * 299.99908 * 17 15 14 37 37 H 1.08993 * 109.47327 * 59.99903 * 17 15 14 38 38 H 1.09001 * 109.47014 * 180.02562 * 17 15 14 39 39 H 0.96994 * 120.00162 * 179.97438 * 21 20 18 40 40 H 1.07998 * 119.96081 * 179.72026 * 26 8 7 41 41 H 1.07997 * 120.03712 * 180.25545 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 6 3.6150 1.1672 -0.0006 6 6 4.3152 2.3766 -0.0011 7 6 5.6918 2.3732 -0.0022 8 6 6.3862 1.1671 -0.0022 9 7 7.7790 1.1670 -0.0027 10 6 8.4531 0.1934 0.6408 11 8 7.8504 -0.6281 1.3002 12 6 9.9419 0.1255 0.5425 13 8 10.5446 0.9467 -0.1172 14 7 10.6160 -0.8484 1.1857 15 6 12.0763 -0.9153 1.0888 16 1 12.3893 -0.5979 0.0942 17 6 12.6998 0.0070 2.1382 18 6 12.5313 -2.3315 1.3308 19 1 11.8054 -3.1044 1.5358 20 6 13.8744 -2.6405 1.2894 21 7 14.7584 -1.6995 1.0393 22 14 14.4384 -4.3960 1.5887 23 1 15.9187 -4.4639 1.4906 24 1 14.0122 -4.8287 2.9438 25 1 13.8328 -5.2910 0.5701 26 6 5.6917 -0.0390 -0.0069 27 6 4.3151 -0.0424 -0.0002 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.9500 -0.8401 0.0004 32 1 3.7769 3.3129 -0.0015 33 1 6.2335 3.3076 -0.0030 34 1 8.2638 1.8677 -0.4663 35 1 10.1343 -1.5050 1.7126 36 1 12.3706 1.0314 1.9633 37 1 12.3867 -0.3103 3.1329 38 1 13.7863 -0.0424 2.0659 39 1 15.7032 -1.9168 1.0106 40 1 6.2334 -0.9733 -0.0115 41 1 3.7768 -0.9786 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338694150.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:15 Heat of formation + Delta-G solvation = -99.142821 kcal Electronic energy + Delta-G solvation = -25291.439598 eV Core-core repulsion = 21363.535806 eV Total energy + Delta-G solvation = -3927.903792 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.21526 -41.12412 -40.12771 -38.94037 -37.06274 -36.02116 -35.71046 -34.34354 -32.12910 -31.47550 -31.00512 -27.96595 -27.37235 -26.30173 -24.12512 -24.01830 -22.52242 -21.55397 -21.24459 -20.19096 -19.34407 -18.64655 -18.16394 -17.45039 -17.30703 -16.90834 -16.83100 -16.27297 -16.02676 -15.91000 -15.65893 -15.16198 -15.05324 -14.75645 -14.45547 -14.39849 -14.14818 -13.78009 -13.71875 -13.60254 -13.10684 -13.07540 -12.90868 -12.84412 -12.70565 -12.33332 -12.28602 -12.14759 -11.59628 -11.18204 -11.16996 -10.72481 -10.60776 -10.21647 -10.08475 -9.99849 -9.35052 -8.19870 -6.37180 -0.46188 0.31609 0.37079 1.22950 1.47410 1.48020 1.56264 1.73707 2.12983 2.21913 2.38940 2.67737 2.80178 3.11049 3.43243 3.71624 3.74870 3.86625 4.19726 4.31377 4.36096 4.48383 4.63575 4.69943 4.87979 4.88490 4.95383 5.00412 5.01467 5.10327 5.19209 5.27800 5.29787 5.37312 5.43132 5.59202 5.72644 5.78154 5.93847 6.03616 6.46708 6.47345 6.64240 6.73403 7.05433 7.15094 7.34962 8.85922 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.028339 B = 0.002187 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.816750 B =12800.609744 C =13598.502012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.720 5.720 3 C 0.558 3.442 4 O -0.581 6.581 5 C -0.165 4.165 6 C -0.043 4.043 7 C -0.143 4.143 8 C 0.161 3.839 9 N -0.636 5.636 10 C 0.522 3.478 11 O -0.510 6.510 12 C 0.495 3.505 13 O -0.556 6.556 14 N -0.669 5.669 15 C 0.268 3.732 16 H 0.016 0.984 17 C -0.137 4.137 18 C -0.552 4.552 19 H 0.072 0.928 20 C 0.019 3.981 21 N -0.912 5.912 22 Si 0.972 3.028 23 H -0.285 1.285 24 H -0.266 1.266 25 H -0.271 1.271 26 C -0.143 4.143 27 C -0.051 4.051 28 H 0.053 0.947 29 H 0.112 0.888 30 H 0.052 0.948 31 H 0.417 0.583 32 H 0.144 0.856 33 H 0.158 0.842 34 H 0.433 0.567 35 H 0.411 0.589 36 H 0.021 0.979 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.267 0.733 40 H 0.134 0.866 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.912 2.163 -2.199 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.372 5.372 3 C 0.346 3.654 4 O -0.462 6.462 5 C -0.169 4.169 6 C -0.062 4.062 7 C -0.163 4.163 8 C 0.066 3.934 9 N -0.283 5.283 10 C 0.304 3.696 11 O -0.384 6.384 12 C 0.275 3.725 13 O -0.436 6.436 14 N -0.318 5.318 15 C 0.166 3.834 16 H 0.034 0.966 17 C -0.196 4.196 18 C -0.590 4.590 19 H 0.090 0.910 20 C -0.182 4.182 21 N -0.550 5.550 22 Si 0.796 3.204 23 H -0.210 1.210 24 H -0.191 1.191 25 H -0.196 1.196 26 C -0.163 4.163 27 C -0.071 4.071 28 H 0.072 0.928 29 H 0.131 0.869 30 H 0.071 0.929 31 H 0.254 0.746 32 H 0.162 0.838 33 H 0.176 0.824 34 H 0.273 0.727 35 H 0.247 0.753 36 H 0.040 0.960 37 H 0.059 0.941 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.152 0.848 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -24.081 2.853 -2.209 24.350 hybrid contribution 1.011 -0.922 0.092 1.372 sum -23.070 1.931 -2.117 23.247 Atomic orbital electron populations 1.21727 0.78145 1.04489 1.01703 1.45700 1.08725 1.08427 1.74351 1.18394 0.87496 0.83966 0.75504 1.90757 1.70723 1.32692 1.52073 1.19965 0.92449 0.95036 1.09448 1.21173 0.93064 0.98204 0.93778 1.21087 0.94088 0.97112 1.04024 1.18188 0.81717 0.95277 0.98180 1.43061 1.05115 1.28504 1.51613 1.20205 0.88222 0.81799 0.79407 1.90747 1.69724 1.39320 1.38604 1.20100 0.87951 0.83055 0.81402 1.90728 1.70211 1.40670 1.41997 1.46257 1.09642 1.28410 1.47522 1.18624 0.73711 0.95866 0.95237 0.96613 1.21934 1.03266 0.96088 0.98286 1.21455 0.93138 0.93568 1.50874 0.91026 1.25731 0.96463 1.01833 0.94146 1.70007 1.02256 1.34399 1.48332 0.85402 0.76907 0.79003 0.79072 1.21025 1.19127 1.19600 1.21196 0.94841 0.97562 1.02722 1.21329 0.93010 0.97854 0.94857 0.92808 0.86941 0.92948 0.74589 0.83800 0.82408 0.72698 0.75300 0.96017 0.94134 0.90843 0.92331 0.84794 0.82099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.70 127.77 1.37 2.16 16 2 N -0.72 -8.89 5.66 -487.69 -2.76 -11.65 16 3 C 0.56 11.15 7.76 86.72 0.67 11.83 16 4 O -0.58 -16.03 16.34 -3.99 -0.07 -16.09 16 5 C -0.17 -3.07 5.88 -20.07 -0.12 -3.19 16 6 C -0.04 -0.80 9.58 22.50 0.22 -0.58 16 7 C -0.14 -2.55 9.94 22.36 0.22 -2.33 16 8 C 0.16 3.48 6.27 38.41 0.24 3.72 16 9 N -0.64 -15.22 5.30 -304.81 -1.62 -16.84 16 10 C 0.52 15.89 7.61 87.24 0.66 16.55 16 11 O -0.51 -16.42 14.16 -3.28 -0.05 -16.46 16 12 C 0.50 18.67 7.85 87.24 0.68 19.36 16 13 O -0.56 -23.57 16.15 -3.28 -0.05 -23.62 16 14 N -0.67 -27.36 5.06 -447.52 -2.27 -29.63 16 15 C 0.27 13.25 2.56 44.25 0.11 13.36 16 16 H 0.02 0.91 7.58 -2.39 -0.02 0.89 16 17 C -0.14 -6.58 9.26 71.98 0.67 -5.91 16 18 C -0.55 -28.35 8.73 25.60 0.22 -28.13 16 19 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 20 C 0.02 0.99 5.30 84.66 0.45 1.44 16 21 N -0.91 -50.11 11.32 21.45 0.24 -49.86 16 22 Si 0.97 40.85 29.54 68.60 2.03 42.88 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 C -0.14 -2.99 8.62 22.36 0.19 -2.80 16 27 C -0.05 -0.82 9.53 22.50 0.21 -0.61 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.42 2.61 6.85 -92.71 -0.63 1.98 16 32 H 0.14 2.59 7.64 -2.91 -0.02 2.57 16 33 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.43 9.06 8.29 -92.71 -0.77 8.29 16 35 H 0.41 15.36 8.01 -92.71 -0.74 14.62 16 36 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 39 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 40 H 0.13 3.09 6.42 -2.91 -0.02 3.07 16 41 H 0.16 1.38 6.39 -2.91 -0.02 1.36 16 Total: -1.00 -68.80 356.53 0.24 -68.56 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -1.03 Total: 27.84 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: 5.81 Total: 24.88 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -6.40 Total: -107.98 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -0.16 Total: -56.18 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -68.80 0.24 -68.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338694150.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.580 kcal (2) G-P(sol) polarization free energy of solvation -68.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds