Wall clock time and date at job start Tue Mar 31 2020 13:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.20695 * 2 1 4 4 C 1.53462 * 109.10452 * 119.44964 * 2 1 3 5 5 N 1.47263 * 107.93369 * 167.15388 * 4 2 1 6 6 C 1.34775 * 121.35545 * 118.51608 * 5 4 2 7 7 O 1.21587 * 120.00157 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99857 * 179.71350 * 6 5 4 9 9 C 1.39940 * 119.99621 * 174.78095 * 8 6 5 10 10 C 1.38963 * 120.03805 * 326.20239 * 9 8 6 11 11 C 1.38158 * 120.06411 * 179.72227 * 10 9 8 12 12 C 1.38160 * 120.14356 * 0.55135 * 11 10 9 13 13 C 1.38913 * 120.06841 * 359.72202 * 12 11 10 14 14 O 1.35749 * 120.03451 * 179.97438 * 13 12 11 15 15 C 1.34832 * 116.99737 * 185.92632 * 14 13 12 16 16 H 1.08000 * 120.00358 * 5.40757 * 15 14 13 17 17 C 1.38658 * 119.99854 * 185.40584 * 15 14 13 18 18 N 1.31559 * 119.99866 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99908 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46540 * 90.00375 * 19 17 15 21 21 H 1.48499 * 109.47155 * 209.99856 * 19 17 15 22 22 H 1.48488 * 109.47253 * 330.00495 * 19 17 15 23 23 C 1.38705 * 120.03455 * 146.47472 * 9 8 6 24 24 C 1.47052 * 117.29351 * 298.23840 * 5 4 2 25 25 C 1.50438 * 108.88850 * 42.98751 * 24 5 4 26 26 O 1.21281 * 118.48747 * 167.27111 * 25 24 5 27 27 N 1.33376 * 123.02361 * 347.29224 * 25 24 5 28 28 H 1.08999 * 109.47131 * 179.38119 * 1 2 3 29 29 H 1.09004 * 109.46988 * 299.37459 * 1 2 3 30 30 H 1.08999 * 109.47474 * 59.37525 * 1 2 3 31 31 H 1.09001 * 109.85074 * 47.54999 * 4 2 1 32 32 H 1.09000 * 109.83999 * 286.74623 * 4 2 1 33 33 H 0.96990 * 120.00170 * 354.78637 * 8 6 5 34 34 H 1.07994 * 119.96320 * 359.97277 * 10 9 8 35 35 H 1.08004 * 119.92770 * 180.29374 * 11 10 9 36 36 H 1.07998 * 119.97014 * 179.70258 * 12 11 10 37 37 H 0.97005 * 120.00037 * 179.97438 * 18 17 15 38 38 H 1.08003 * 120.06762 * 359.97438 * 23 9 8 39 39 H 1.08996 * 109.57219 * 162.81302 * 24 5 4 40 40 H 1.09003 * 109.57035 * 283.17170 * 24 5 4 41 41 H 0.96999 * 117.71095 * 184.33666 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8886 1.0294 0.0000 4 6 2.0323 -0.7130 1.2627 5 7 3.4715 -0.9751 1.0934 6 6 4.3845 -0.4418 1.9290 7 8 4.0261 0.2725 2.8454 8 7 5.6946 -0.7045 1.7521 9 6 6.6503 -0.0656 2.5501 10 6 6.4370 1.2380 2.9816 11 6 7.3775 1.8674 3.7742 12 6 8.5377 1.2074 4.1309 13 6 8.7594 -0.0939 3.6981 14 8 9.8998 -0.7415 4.0486 15 6 10.1098 -1.9535 3.4964 16 1 9.4322 -2.3288 2.7437 17 6 11.1957 -2.7181 3.8947 18 7 12.0209 -2.2611 4.8119 19 14 11.4863 -4.3975 3.1302 20 1 12.3458 -4.2519 1.9279 21 1 12.1598 -5.2804 4.1161 22 1 10.1846 -4.9950 2.7386 23 6 7.8140 -0.7308 2.9066 24 6 3.8714 -1.8474 -0.0209 25 6 3.0778 -1.4719 -1.2425 26 8 3.4257 -1.9142 -2.3168 27 7 2.0094 -0.6748 -1.1985 28 1 -0.3633 -1.0276 -0.0111 29 1 -0.3633 0.5041 0.8956 30 1 -0.3634 0.5235 -0.8843 31 1 1.4995 -1.6550 1.3926 32 1 1.8742 -0.0774 2.1340 33 1 5.9750 -1.3363 1.0718 34 1 5.5334 1.7583 2.7004 35 1 7.2073 2.8789 4.1122 36 1 9.2732 1.7037 4.7466 37 1 12.7804 -2.7962 5.0908 38 1 7.9839 -1.7427 2.5692 39 1 4.9348 -1.7180 -0.2223 40 1 3.6712 -2.8868 0.2392 41 1 1.5169 -0.5347 -2.0223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364268182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:16 Heat of formation + Delta-G solvation = -43.640106 kcal Electronic energy + Delta-G solvation = -26317.468075 eV Core-core repulsion = 22391.971061 eV Total energy + Delta-G solvation = -3925.497014 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.26092 -39.94649 -38.77055 -37.34653 -36.39158 -35.06838 -34.15528 -32.23764 -31.67524 -29.45961 -28.64409 -28.37337 -26.53420 -25.27976 -23.02241 -22.17056 -21.83825 -20.62003 -19.50032 -18.92108 -18.06388 -17.63655 -17.17579 -16.73612 -16.14921 -15.92609 -15.40219 -15.17435 -14.90363 -14.75658 -14.37411 -14.09461 -13.82521 -13.76753 -13.52165 -13.11371 -13.00217 -12.90751 -12.62476 -12.40624 -12.01240 -11.93454 -11.78504 -11.56188 -11.20824 -10.98701 -10.83198 -10.66697 -10.46308 -10.11683 -9.73264 -9.61707 -9.48471 -9.06050 -8.81346 -7.74708 -7.16145 -6.45466 -4.05220 1.98307 2.13670 2.19581 2.38818 2.79575 3.08491 3.12335 3.14935 3.17182 3.62504 3.93478 3.95591 4.15214 4.44588 4.52830 4.60026 4.65648 4.89520 4.96968 5.09494 5.13582 5.26637 5.28545 5.39398 5.55288 5.64362 5.80272 5.98315 6.03910 6.20460 6.21763 6.31864 6.42167 6.69349 6.82110 6.97255 7.04742 7.14908 7.30987 7.41580 7.69227 7.79124 7.80371 7.98640 8.42429 8.99946 9.70154 10.72552 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.016092 B = 0.003138 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.594550 B = 8920.130472 C =10237.226215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.120 3.880 3 H 0.083 0.917 4 C 0.120 3.880 5 N -0.636 5.636 6 C 0.713 3.287 7 O -0.561 6.561 8 N -0.679 5.679 9 C 0.195 3.805 10 C -0.205 4.205 11 C -0.062 4.062 12 C -0.201 4.201 13 C 0.169 3.831 14 O -0.176 6.176 15 C -0.392 4.392 16 H 0.090 0.910 17 C 0.040 3.960 18 N -0.862 5.862 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.256 4.256 24 C 0.096 3.904 25 C 0.516 3.484 26 O -0.546 6.546 27 N -0.711 5.711 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.402 0.598 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.270 0.730 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.601 2.402 -9.617 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.014 3.986 3 H 0.101 0.899 4 C -0.004 4.004 5 N -0.377 5.377 6 C 0.415 3.585 7 O -0.436 6.436 8 N -0.327 5.327 9 C 0.102 3.898 10 C -0.226 4.226 11 C -0.081 4.081 12 C -0.221 4.221 13 C 0.115 3.885 14 O -0.079 6.079 15 C -0.468 4.468 16 H 0.107 0.893 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.193 1.193 23 C -0.278 4.278 24 C -0.030 4.030 25 C 0.301 3.699 26 O -0.423 6.423 27 N -0.364 5.364 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.238 0.762 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.147 0.853 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -21.152 2.636 -9.018 23.145 hybrid contribution -0.003 -1.262 -1.080 1.661 sum -21.155 1.374 -10.098 23.482 Atomic orbital electron populations 1.22126 0.93106 1.03301 1.03612 1.21516 0.95173 0.97066 0.84820 0.89935 1.22026 0.78691 1.01598 0.98086 1.47360 1.06697 1.52672 1.30944 1.15679 0.80643 0.80382 0.81777 1.90959 1.79074 1.41309 1.32240 1.42727 1.03981 1.46945 1.39077 1.17180 0.88011 0.91142 0.93459 1.20531 1.01509 0.93829 1.06687 1.20516 0.92662 0.98530 0.96387 1.20251 0.99916 0.93751 1.08136 1.19061 0.86192 0.91578 0.91657 1.84023 1.32098 1.30915 1.60845 1.21264 1.12092 0.92430 1.21050 0.89259 1.25277 0.95295 0.99481 0.96410 1.70037 1.13835 1.37660 1.28148 0.85731 0.78940 0.80231 0.78621 1.19868 1.20265 1.19280 1.20776 0.96442 1.01591 1.08987 1.21838 1.00793 0.96553 0.83863 1.20212 0.80796 0.78146 0.90697 1.90827 1.67881 1.54009 1.29590 1.45557 1.29531 1.48368 1.12929 0.91516 0.90196 0.91481 0.90174 0.86494 0.76158 0.86326 0.86602 0.86358 0.92007 0.85262 0.86720 0.87343 0.76412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.54 9.33 37.16 0.35 -0.20 16 2 C 0.12 0.71 3.86 -68.15 -0.26 0.44 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.12 0.90 5.86 -3.39 -0.02 0.88 16 5 N -0.64 -6.50 2.97 -179.60 -0.53 -7.03 16 6 C 0.71 10.29 8.07 -86.91 -0.70 9.59 16 7 O -0.56 -9.86 13.55 5.29 0.07 -9.79 16 8 N -0.68 -10.20 5.22 -14.24 -0.07 -10.28 16 9 C 0.20 3.70 6.27 -83.71 -0.52 3.17 16 10 C -0.20 -3.87 8.65 -39.34 -0.34 -4.21 16 11 C -0.06 -1.15 10.03 -39.64 -0.40 -1.55 16 12 C -0.20 -4.27 9.99 -39.36 -0.39 -4.66 16 13 C 0.17 4.07 6.64 -39.13 -0.26 3.81 16 14 O -0.18 -4.95 9.76 0.05 0.00 -4.95 16 15 C -0.39 -10.78 9.44 30.89 0.29 -10.49 16 16 H 0.09 2.25 5.30 -52.49 -0.28 1.97 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -25.11 13.67 55.48 0.76 -24.35 16 19 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 C -0.26 -5.48 9.04 -39.21 -0.35 -5.84 16 24 C 0.10 0.84 6.40 -5.02 -0.03 0.81 16 25 C 0.52 5.14 7.84 -11.73 -0.09 5.05 16 26 O -0.55 -7.48 17.80 5.56 0.10 -7.38 16 27 N -0.71 -5.19 5.12 -54.54 -0.28 -5.47 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.12 0.98 7.06 -51.93 -0.37 0.61 16 33 H 0.40 4.91 6.51 -40.82 -0.27 4.65 16 34 H 0.12 2.18 6.45 -52.49 -0.34 1.85 16 35 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 36 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 37 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.13 2.72 5.72 -52.48 -0.30 2.42 16 39 H 0.11 0.98 6.02 -51.93 -0.31 0.67 16 40 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.40 2.49 8.61 -40.82 -0.35 2.14 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -35.24 344.78 -7.35 -42.59 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.73 Total: 8.44 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -2.84 Total: -2.21 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.13 Total: -47.13 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: 0.17 Total: -22.12 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.24 -7.35 -42.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364268182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.048 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds