Wall clock time and date at job start Tue Mar 31 2020 14:24:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 O 1.21299 * 119.99974 * 2 1
4 4 C 1.46857 * 120.00315 * 180.02562 * 2 1 3
5 5 C 1.40582 * 120.51569 * 180.02562 * 4 2 1
6 6 C 1.36824 * 118.46230 * 179.97438 * 5 4 2
7 7 C 1.39359 * 119.41445 * 0.27695 * 6 5 4
8 8 N 1.38818 * 119.50235 * 179.70346 * 7 6 5
9 9 C 1.34782 * 119.99943 * 174.93158 * 8 7 6
10 10 O 1.21564 * 119.99962 * 5.09372 * 9 8 7
11 11 N 1.34770 * 119.99795 * 185.09496 * 9 8 7
12 12 C 1.47422 * 125.65208 * 359.69068 * 11 9 8
13 13 C 1.55127 * 104.72622 * 155.81581 * 12 11 9
14 14 C 1.55163 * 101.48428 * 37.29896 * 13 12 11
15 15 O 1.42896 * 110.72162 * 82.69628 * 14 13 12
16 16 C 1.50705 * 110.87107 * 205.90236 * 14 13 12
17 17 H 1.08002 * 119.99591 * 355.05534 * 16 14 13
18 18 C 1.37869 * 119.99918 * 175.06291 * 16 14 13
19 19 N 1.31519 * 120.00395 * 359.97438 * 18 16 14
20 20 Si 1.86801 * 120.00182 * 179.97438 * 18 16 14
21 21 H 1.48503 * 109.46926 * 359.97438 * 20 18 16
22 22 H 1.48495 * 109.47142 * 119.99800 * 20 18 16
23 23 H 1.48500 * 109.47094 * 240.00301 * 20 18 16
24 24 C 1.47022 * 125.64871 * 180.02562 * 11 9 8
25 25 N 1.32581 * 120.99377 * 359.42009 * 7 6 5
26 26 C 1.31600 * 121.68139 * 0.59655 * 25 7 6
27 27 H 1.09001 * 109.46985 * 239.99246 * 1 2 3
28 28 H 1.08995 * 109.47414 * 0.02562 * 1 2 3
29 29 H 1.09002 * 109.47447 * 120.00343 * 1 2 3
30 30 H 1.08005 * 120.76782 * 359.95411 * 5 4 2
31 31 H 1.08002 * 120.29486 * 179.97438 * 6 5 4
32 32 H 0.97001 * 120.00032 * 354.92565 * 8 7 6
33 33 H 1.09002 * 110.36917 * 274.74511 * 12 11 9
34 34 H 1.09006 * 110.36923 * 37.06797 * 12 11 9
35 35 H 1.09000 * 111.19219 * 279.19521 * 13 12 11
36 36 H 1.08996 * 110.91142 * 155.27367 * 13 12 11
37 37 H 0.96699 * 113.99592 * 185.02896 * 15 14 13
38 38 H 0.96993 * 120.00555 * 180.02562 * 19 18 16
39 39 H 1.09006 * 109.88008 * 300.44182 * 24 11 9
40 40 H 1.08997 * 109.88468 * 61.44417 * 24 11 9
41 41 H 1.08007 * 119.76996 * 179.68047 * 26 25 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0505 0.0000
4 6 2.2413 -1.2718 -0.0006
5 6 3.6471 -1.2844 0.0000
6 6 4.2884 -2.4930 -0.0001
7 6 3.5368 -3.6665 -0.0065
8 7 4.1856 -4.8938 -0.0128
9 6 3.4726 -6.0335 0.0841
10 8 2.2577 -5.9923 0.0837
11 7 4.1066 -7.2187 0.1815
12 6 5.5679 -7.4135 0.1877
13 6 5.7825 -8.7645 0.9193
14 6 4.5737 -9.5900 0.4047
15 8 4.8590 -10.1613 -0.8737
16 6 4.1959 -10.6625 1.3936
17 1 4.7990 -10.8204 2.2756
18 6 3.0806 -11.4422 1.1724
19 7 2.3460 -11.2497 0.0987
20 14 2.6127 -12.7722 2.3979
21 1 3.5945 -12.7863 3.5120
22 1 1.2567 -12.4947 2.9358
23 1 2.6155 -14.0933 1.7197
24 6 3.4555 -8.5322 0.2922
25 7 2.2116 -3.6286 -0.0010
26 6 1.5527 -2.4894 -0.0011
27 1 -0.3633 -0.5140 0.8899
28 1 -0.3634 1.0276 -0.0005
29 1 -0.3634 -0.5139 -0.8899
30 1 4.2079 -0.3613 0.0001
31 1 5.3675 -2.5372 -0.0001
32 1 5.1520 -4.9311 -0.0870
33 1 5.9478 -7.4675 -0.8326
34 1 6.0561 -6.6057 0.7329
35 1 5.7374 -8.6383 2.0010
36 1 6.7247 -9.2236 0.6200
37 1 4.1096 -10.6228 -1.2743
38 1 1.5612 -11.7980 -0.0568
39 1 2.8275 -8.5608 1.1827
40 1 2.8502 -8.7219 -0.5941
41 1 0.4727 -2.4945 -0.0018
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001365777953.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:24:09
Heat of formation + Delta-G solvation = -56.536588 kcal
Electronic energy + Delta-G solvation = -26237.172883 eV
Core-core repulsion = 22311.116636 eV
Total energy + Delta-G solvation = -3926.056247 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.136 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.03506 -39.80758 -38.80150 -37.43726 -34.82182 -34.36939 -32.68315 -32.27725
-31.71249 -30.18042 -28.99923 -27.84317 -25.44610 -24.16054 -23.91039 -22.56604
-20.41026 -19.93860 -19.62507 -18.50289 -17.40424 -17.15978 -16.82234 -16.20498
-15.74425 -15.32978 -15.14008 -14.92043 -14.57115 -14.42400 -14.37985 -14.08531
-13.57787 -13.26268 -12.99202 -12.96958 -12.91392 -12.50440 -12.44265 -12.30656
-11.76691 -11.58102 -11.10518 -10.92296 -10.77896 -10.75376 -10.50528 -10.22973
-10.21780 -10.12477 -9.99671 -9.39757 -9.06209 -8.73183 -8.47187 -8.38787
-7.91449 -6.32955 -4.41733 0.37053 1.13964 2.19358 2.56262 3.18025
3.27090 3.30054 3.40591 3.80692 3.87796 3.97444 4.23921 4.39085
4.60305 4.69458 4.79738 4.86746 4.94918 5.13466 5.15201 5.22265
5.40526 5.52601 5.58028 5.62157 5.69565 5.87239 5.96211 5.97445
6.07481 6.40301 6.52669 6.64010 6.77558 6.80547 6.99371 7.21147
7.29005 7.36223 7.68559 7.84927 7.97658 8.26263 8.61951 8.88236
9.23486 9.32915 10.74911
Molecular weight = 319.14amu
Principal moments of inertia in cm(-1)
A = 0.025117 B = 0.002672 C = 0.002504
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1114.536332 B =10475.688435 C =11180.739337
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C 0.407 3.593
3 O -0.471 6.471
4 C -0.281 4.281
5 C 0.013 3.987
6 C -0.230 4.230
7 C 0.423 3.577
8 N -0.665 5.665
9 C 0.700 3.300
10 O -0.527 6.527
11 N -0.625 5.625
12 C 0.097 3.903
13 C -0.115 4.115
14 C 0.248 3.752
15 O -0.585 6.585
16 C -0.538 4.538
17 H 0.067 0.933
18 C 0.071 3.929
19 N -0.893 5.893
20 Si 0.904 3.096
21 H -0.272 1.272
22 H -0.281 1.281
23 H -0.281 1.281
24 C 0.122 3.878
25 N -0.481 5.481
26 C 0.192 3.808
27 H 0.095 0.905
28 H 0.084 0.916
29 H 0.095 0.905
30 H 0.144 0.856
31 H 0.141 0.859
32 H 0.413 0.587
33 H 0.066 0.934
34 H 0.056 0.944
35 H 0.078 0.922
36 H 0.077 0.923
37 H 0.383 0.617
38 H 0.270 0.730
39 H 0.067 0.933
40 H 0.066 0.934
41 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.439 16.884 -0.726 17.075
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.259 4.259
2 C 0.286 3.714
3 O -0.347 6.347
4 C -0.287 4.287
5 C -0.013 4.013
6 C -0.254 4.254
7 C 0.189 3.811
8 N -0.312 5.312
9 C 0.402 3.598
10 O -0.398 6.398
11 N -0.363 5.363
12 C -0.026 4.026
13 C -0.153 4.153
14 C 0.208 3.792
15 O -0.394 6.394
16 C -0.576 4.576
17 H 0.086 0.914
18 C -0.133 4.133
19 N -0.531 5.531
20 Si 0.731 3.269
21 H -0.196 1.196
22 H -0.207 1.207
23 H -0.207 1.207
24 C 0.000 4.000
25 N -0.195 5.195
26 C 0.030 3.970
27 H 0.114 0.886
28 H 0.103 0.897
29 H 0.114 0.886
30 H 0.162 0.838
31 H 0.159 0.841
32 H 0.250 0.750
33 H 0.084 0.916
34 H 0.075 0.925
35 H 0.097 0.903
36 H 0.096 0.904
37 H 0.233 0.767
38 H 0.080 0.920
39 H 0.086 0.914
40 H 0.084 0.916
41 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges 1.811 16.720 -0.688 16.832
hybrid contribution 0.074 -0.365 0.440 0.576
sum 1.884 16.355 -0.247 16.465
Atomic orbital electron populations
1.22268 0.93660 1.05171 1.04821 1.22181 0.91577 0.87141 0.70469
1.90532 1.72232 1.34302 1.37665 1.21358 0.95345 0.96421 1.15559
1.21241 0.93218 0.97982 0.88821 1.21143 1.01283 0.91354 1.11642
1.18553 0.89182 0.84769 0.88632 1.43001 1.10752 1.03467 1.73935
1.15627 0.85348 0.79297 0.79563 1.91028 1.10428 1.84278 1.54076
1.48122 1.07632 1.05757 1.74768 1.22392 0.81167 0.98720 1.00360
1.22759 1.00111 0.92997 0.99414 1.19518 0.87878 0.89042 0.82797
1.86104 1.43044 1.74910 1.35321 1.21505 1.10966 1.17286 1.07826
0.91441 1.25078 0.95458 0.97152 0.95608 1.69695 1.17011 1.40040
1.26385 0.86342 0.78452 0.81110 0.80974 1.19601 1.20734 1.20727
1.22979 0.97262 0.77739 1.01984 1.67926 1.06543 1.28733 1.16295
1.23179 1.00380 0.85544 0.87875 0.88632 0.89721 0.88642 0.83790
0.84137 0.74961 0.91601 0.92517 0.90335 0.90417 0.76660 0.91977
0.91434 0.91560 0.81652
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -1.29 8.94 36.00 0.32 -0.97 16
2 C 0.41 4.07 7.22 -30.83 -0.22 3.85 16
3 O -0.47 -6.10 17.14 5.54 0.09 -6.01 16
4 C -0.28 -3.03 5.89 -104.91 -0.62 -3.64 16
5 C 0.01 0.13 9.66 -39.21 -0.38 -0.25 16
6 C -0.23 -2.40 9.86 -39.68 -0.39 -2.79 16
7 C 0.42 5.95 7.41 -154.96 -1.15 4.80 16
8 N -0.66 -9.60 5.32 -15.83 -0.08 -9.69 16
9 C 0.70 13.60 8.44 -86.92 -0.73 12.86 16
10 O -0.53 -12.31 14.90 5.31 0.08 -12.23 16
11 N -0.62 -12.18 3.32 -176.10 -0.59 -12.77 16
12 C 0.10 1.54 6.54 -2.41 -0.02 1.52 16
13 C -0.11 -2.13 6.24 -24.46 -0.15 -2.28 16
14 C 0.25 5.73 0.85 -89.93 -0.08 5.65 16
15 O -0.58 -14.08 13.07 -35.23 -0.46 -14.54 16
16 C -0.54 -13.60 8.13 -34.44 -0.28 -13.88 16
17 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16
18 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16
19 N -0.89 -23.25 10.96 55.43 0.61 -22.64 16
20 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16
21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16
22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
24 C 0.12 2.85 5.23 -3.06 -0.02 2.83 16
25 N -0.48 -7.65 7.84 -12.00 -0.09 -7.75 16
26 C 0.19 2.28 10.64 -17.04 -0.18 2.10 16
27 H 0.10 0.48 8.09 -51.93 -0.42 0.06 16
28 H 0.08 0.52 8.12 -51.93 -0.42 0.09 16
29 H 0.10 0.47 8.09 -51.93 -0.42 0.05 16
30 H 0.14 1.27 7.72 -52.48 -0.41 0.87 16
31 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16
32 H 0.41 4.41 7.22 -40.82 -0.29 4.12 16
33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16
34 H 0.06 0.68 7.37 -51.93 -0.38 0.30 16
35 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16
36 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16
37 H 0.38 9.50 7.45 45.56 0.34 9.84 16
38 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16
39 H 0.07 1.74 7.82 -51.93 -0.41 1.33 16
40 H 0.07 1.70 7.92 -51.93 -0.41 1.29 16
41 H 0.17 1.47 7.06 -52.48 -0.37 1.10 16
LS Contribution 349.10 15.07 5.26 5.26
Total: -1.00 -32.63 349.10 -8.61 -41.24
By element:
Atomic # 1 Polarization: 16.98 SS G_CDS: -4.42 Total: 12.55 kcal
Atomic # 6 Polarization: 15.50 SS G_CDS: -3.99 Total: 11.51 kcal
Atomic # 7 Polarization: -52.69 SS G_CDS: -0.16 Total: -52.84 kcal
Atomic # 8 Polarization: -32.49 SS G_CDS: -0.29 Total: -32.78 kcal
Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -32.63 -8.61 -41.24 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001365777953.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.295 kcal
(2) G-P(sol) polarization free energy of solvation -32.629 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.924 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.537 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds