Wall clock time and date at job start Tue Mar 31 2020 14:24:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 O 1.21299 * 119.99974 * 2 1
4 4 C 1.46857 * 120.00315 * 180.02562 * 2 1 3
5 5 C 1.40582 * 120.51569 * 180.02562 * 4 2 1
6 6 C 1.36824 * 118.46230 * 179.97438 * 5 4 2
7 7 C 1.39359 * 119.41445 * 0.27695 * 6 5 4
8 8 N 1.38818 * 119.50235 * 179.70346 * 7 6 5
9 9 C 1.34782 * 119.99943 * 174.93158 * 8 7 6
10 10 O 1.21564 * 119.99962 * 5.09372 * 9 8 7
11 11 N 1.34770 * 119.99795 * 185.09496 * 9 8 7
12 12 C 1.47422 * 125.65208 * 359.69068 * 11 9 8
13 13 C 1.55127 * 104.72622 * 155.81581 * 12 11 9
14 14 C 1.55163 * 101.48428 * 37.29896 * 13 12 11
15 15 O 1.42896 * 110.72162 * 82.69628 * 14 13 12
16 16 C 1.50705 * 110.87107 * 205.90236 * 14 13 12
17 17 H 1.08002 * 119.99591 * 355.05534 * 16 14 13
18 18 C 1.37869 * 119.99918 * 175.06291 * 16 14 13
19 19 N 1.31519 * 120.00395 * 359.97438 * 18 16 14
20 20 Si 1.86801 * 120.00182 * 179.97438 * 18 16 14
21 21 H 1.48503 * 109.46926 * 359.97438 * 20 18 16
22 22 H 1.48495 * 109.47142 * 119.99800 * 20 18 16
23 23 H 1.48500 * 109.47094 * 240.00301 * 20 18 16
24 24 C 1.47022 * 125.64871 * 180.02562 * 11 9 8
25 25 N 1.32581 * 120.99377 * 359.42009 * 7 6 5
26 26 C 1.31600 * 121.68139 * 0.59655 * 25 7 6
27 27 H 1.09001 * 109.46985 * 239.99246 * 1 2 3
28 28 H 1.08995 * 109.47414 * 0.02562 * 1 2 3
29 29 H 1.09002 * 109.47447 * 120.00343 * 1 2 3
30 30 H 1.08005 * 120.76782 * 359.95411 * 5 4 2
31 31 H 1.08002 * 120.29486 * 179.97438 * 6 5 4
32 32 H 0.97001 * 120.00032 * 354.92565 * 8 7 6
33 33 H 1.09002 * 110.36917 * 274.74511 * 12 11 9
34 34 H 1.09006 * 110.36923 * 37.06797 * 12 11 9
35 35 H 1.09000 * 111.19219 * 279.19521 * 13 12 11
36 36 H 1.08996 * 110.91142 * 155.27367 * 13 12 11
37 37 H 0.96699 * 113.99592 * 185.02896 * 15 14 13
38 38 H 0.96993 * 120.00555 * 180.02562 * 19 18 16
39 39 H 1.09006 * 109.88008 * 300.44182 * 24 11 9
40 40 H 1.08997 * 109.88468 * 61.44417 * 24 11 9
41 41 H 1.08007 * 119.76996 * 179.68047 * 26 25 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0505 0.0000
4 6 2.2413 -1.2718 -0.0006
5 6 3.6471 -1.2844 0.0000
6 6 4.2884 -2.4930 -0.0001
7 6 3.5368 -3.6665 -0.0065
8 7 4.1856 -4.8938 -0.0128
9 6 3.4726 -6.0335 0.0841
10 8 2.2577 -5.9923 0.0837
11 7 4.1066 -7.2187 0.1815
12 6 5.5679 -7.4135 0.1877
13 6 5.7825 -8.7645 0.9193
14 6 4.5737 -9.5900 0.4047
15 8 4.8590 -10.1613 -0.8737
16 6 4.1959 -10.6625 1.3936
17 1 4.7990 -10.8204 2.2756
18 6 3.0806 -11.4422 1.1724
19 7 2.3460 -11.2497 0.0987
20 14 2.6127 -12.7722 2.3979
21 1 3.5945 -12.7863 3.5120
22 1 1.2567 -12.4947 2.9358
23 1 2.6155 -14.0933 1.7197
24 6 3.4555 -8.5322 0.2922
25 7 2.2116 -3.6286 -0.0010
26 6 1.5527 -2.4894 -0.0011
27 1 -0.3633 -0.5140 0.8899
28 1 -0.3634 1.0276 -0.0005
29 1 -0.3634 -0.5139 -0.8899
30 1 4.2079 -0.3613 0.0001
31 1 5.3675 -2.5372 -0.0001
32 1 5.1520 -4.9311 -0.0870
33 1 5.9478 -7.4675 -0.8326
34 1 6.0561 -6.6057 0.7329
35 1 5.7374 -8.6383 2.0010
36 1 6.7247 -9.2236 0.6200
37 1 4.1096 -10.6228 -1.2743
38 1 1.5612 -11.7980 -0.0568
39 1 2.8275 -8.5608 1.1827
40 1 2.8502 -8.7219 -0.5941
41 1 0.4727 -2.4945 -0.0018
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001365777953.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:24:08
Heat of formation + Delta-G solvation = -80.022638 kcal
Electronic energy + Delta-G solvation = -26238.191314 eV
Core-core repulsion = 22311.116636 eV
Total energy + Delta-G solvation = -3927.074679 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.136 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-42.12667 -41.02146 -39.88383 -38.96033 -36.15140 -36.00667 -34.22858 -33.60174
-32.64916 -31.61811 -29.94808 -29.43748 -27.14324 -25.22286 -25.04242 -23.90185
-21.53097 -21.20962 -21.11025 -19.70204 -19.04971 -18.63607 -17.70603 -17.33680
-17.15466 -16.90678 -16.24104 -16.18570 -16.04847 -15.55036 -15.36993 -15.25104
-14.78802 -14.75246 -14.56757 -14.31347 -13.87859 -13.83157 -13.50745 -13.33684
-13.04432 -13.01162 -12.87347 -12.54027 -12.35607 -12.25323 -12.10615 -11.92785
-11.50950 -11.17948 -11.03030 -10.95101 -10.66458 -10.32391 -10.12934 -9.72363
-9.28158 -8.26495 -6.41944 -0.53994 0.29056 1.29169 1.32880 1.41023
1.44086 1.54048 2.07189 2.37504 2.70525 2.87603 3.00593 3.10465
3.44763 3.78027 3.78923 3.86292 3.92698 4.05478 4.16803 4.22399
4.36884 4.55686 4.58197 4.62572 4.69155 4.70651 4.78370 5.01261
5.04585 5.12177 5.13411 5.19338 5.28096 5.35166 5.47759 5.64971
5.74408 5.79988 6.07254 6.50521 6.63576 6.70349 7.05578 7.27439
7.35127 7.46714 8.79628
Molecular weight = 319.14amu
Principal moments of inertia in cm(-1)
A = 0.025117 B = 0.002672 C = 0.002504
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1114.536332 B =10475.688435 C =11180.739337
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.411 3.589
3 O -0.502 6.502
4 C -0.275 4.275
5 C 0.006 3.994
6 C -0.206 4.206
7 C 0.392 3.608
8 N -0.649 5.649
9 C 0.700 3.300
10 O -0.577 6.577
11 N -0.630 5.630
12 C 0.101 3.899
13 C -0.110 4.110
14 C 0.233 3.767
15 O -0.586 6.586
16 C -0.555 4.555
17 H 0.068 0.932
18 C 0.025 3.975
19 N -0.915 5.915
20 Si 0.962 3.038
21 H -0.264 1.264
22 H -0.285 1.285
23 H -0.278 1.278
24 C 0.142 3.858
25 N -0.531 5.531
26 C 0.183 3.817
27 H 0.112 0.888
28 H 0.089 0.911
29 H 0.113 0.887
30 H 0.163 0.837
31 H 0.179 0.821
32 H 0.432 0.568
33 H 0.077 0.923
34 H 0.107 0.893
35 H 0.084 0.916
36 H 0.092 0.908
37 H 0.375 0.625
38 H 0.269 0.731
39 H 0.031 0.969
40 H 0.030 0.970
41 H 0.187 0.813
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.053 18.673 -0.171 19.109
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.256 4.256
2 C 0.292 3.708
3 O -0.381 6.381
4 C -0.280 4.280
5 C -0.019 4.019
6 C -0.229 4.229
7 C 0.159 3.841
8 N -0.298 5.298
9 C 0.402 3.598
10 O -0.452 6.452
11 N -0.367 5.367
12 C -0.021 4.021
13 C -0.148 4.148
14 C 0.192 3.808
15 O -0.394 6.394
16 C -0.593 4.593
17 H 0.086 0.914
18 C -0.176 4.176
19 N -0.554 5.554
20 Si 0.787 3.213
21 H -0.188 1.188
22 H -0.211 1.211
23 H -0.204 1.204
24 C 0.018 3.982
25 N -0.246 5.246
26 C 0.023 3.977
27 H 0.131 0.869
28 H 0.108 0.892
29 H 0.131 0.869
30 H 0.180 0.820
31 H 0.196 0.804
32 H 0.273 0.727
33 H 0.095 0.905
34 H 0.125 0.875
35 H 0.103 0.897
36 H 0.111 0.889
37 H 0.224 0.776
38 H 0.079 0.921
39 H 0.050 0.950
40 H 0.048 0.952
41 H 0.204 0.796
Dipole moment (debyes) X Y Z Total
from point charges 3.483 18.563 -0.133 18.887
hybrid contribution -0.461 -0.799 0.255 0.957
sum 3.022 17.763 0.122 18.019
Atomic orbital electron populations
1.22310 0.90765 1.06078 1.06430 1.22603 0.93096 0.86109 0.68996
1.90529 1.73165 1.35100 1.39303 1.21593 0.95952 0.96473 1.13999
1.21582 0.93295 0.98719 0.88309 1.21404 1.02889 0.89626 1.09029
1.18859 0.89276 0.85291 0.90643 1.42573 1.11336 1.02154 1.73740
1.15789 0.84980 0.80156 0.78891 1.90986 1.12824 1.85261 1.56127
1.48010 1.09042 1.04640 1.75016 1.22583 0.78991 0.98966 1.01519
1.22755 0.98539 0.93533 0.99953 1.19731 0.90103 0.88879 0.82058
1.86094 1.42617 1.74889 1.35821 1.21853 1.11089 1.18023 1.08352
0.91424 1.25805 0.95584 0.99110 0.97085 1.69804 1.17219 1.40723
1.27648 0.85447 0.77863 0.78777 0.79196 1.18847 1.21112 1.20381
1.22405 0.96895 0.80418 0.98437 1.67787 1.08211 1.30961 1.17644
1.23477 1.01376 0.84940 0.87880 0.86918 0.89249 0.86873 0.81978
0.80355 0.72708 0.90460 0.87489 0.89750 0.88934 0.77574 0.92135
0.95043 0.95181 0.79592
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -2.08 8.94 71.23 0.64 -1.44 16
2 C 0.41 7.44 7.22 27.94 0.20 7.64 16
3 O -0.50 -12.23 17.14 -3.09 -0.05 -12.29 16
4 C -0.28 -5.42 5.89 -20.05 -0.12 -5.54 16
5 C 0.01 0.11 9.66 22.51 0.22 0.33 16
6 C -0.21 -3.67 9.86 22.21 0.22 -3.45 16
7 C 0.39 10.48 7.41 133.13 0.99 11.46 16
8 N -0.65 -17.68 5.32 -322.27 -1.71 -19.39 16
9 C 0.70 27.26 8.44 179.05 1.51 28.78 16
10 O -0.58 -27.98 14.90 -3.92 -0.06 -28.04 16
11 N -0.63 -24.47 3.32 -829.34 -2.76 -27.22 16
12 C 0.10 2.94 6.54 86.93 0.57 3.51 16
13 C -0.11 -3.88 6.24 32.06 0.20 -3.68 16
14 C 0.23 10.86 0.85 -10.35 -0.01 10.85 16
15 O -0.59 -28.64 13.07 -148.98 -1.95 -30.59 16
16 C -0.55 -28.45 8.13 25.60 0.21 -28.25 16
17 H 0.07 3.38 7.78 -2.91 -0.02 3.35 16
18 C 0.03 1.30 5.28 84.65 0.45 1.75 16
19 N -0.91 -49.36 10.96 21.45 0.24 -49.13 16
20 Si 0.96 41.69 29.54 68.60 2.03 43.72 16
21 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16
22 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16
23 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16
24 C 0.14 6.90 5.23 86.73 0.45 7.36 16
25 N -0.53 -16.80 7.84 -191.87 -1.50 -18.31 16
26 C 0.18 4.18 10.64 85.13 0.91 5.09 16
27 H 0.11 0.83 8.09 -2.39 -0.02 0.81 16
28 H 0.09 0.89 8.12 -2.39 -0.02 0.87 16
29 H 0.11 0.82 8.09 -2.39 -0.02 0.80 16
30 H 0.16 2.36 7.72 -2.91 -0.02 2.34 16
31 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16
32 H 0.43 7.81 7.22 -92.71 -0.67 7.14 16
33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16
34 H 0.11 2.08 7.37 -2.38 -0.02 2.07 16
35 H 0.08 2.86 8.04 -2.39 -0.02 2.85 16
36 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16
37 H 0.38 19.33 7.45 -74.06 -0.55 18.78 16
38 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16
39 H 0.03 1.71 7.82 -2.38 -0.02 1.69 16
40 H 0.03 1.64 7.92 -2.39 -0.02 1.62 16
41 H 0.19 3.11 7.06 -2.91 -0.02 3.09 16
Total: -1.00 -75.18 349.10 0.53 -74.65
By element:
Atomic # 1 Polarization: 32.31 SS G_CDS: -0.13 Total: 32.18 kcal
Atomic # 6 Polarization: 27.99 SS G_CDS: 6.43 Total: 34.42 kcal
Atomic # 7 Polarization: -108.31 SS G_CDS: -5.74 Total: -114.05 kcal
Atomic # 8 Polarization: -68.86 SS G_CDS: -2.06 Total: -70.91 kcal
Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal
Total: -75.18 0.53 -74.65 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001365777953.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.370 kcal
(2) G-P(sol) polarization free energy of solvation -75.181 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.551 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.528 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.653 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.023 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds