Wall clock time and date at job start Tue Mar 31 2020 14:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47486 * 2 1 4 4 C 1.34259 * 125.76125 * 125.26614 * 3 2 1 5 5 C 1.38039 * 107.41810 * 180.14523 * 4 3 2 6 6 C 1.47434 * 126.41258 * 179.87343 * 5 4 3 7 7 O 1.21611 * 119.99455 * 227.62093 * 6 5 4 8 8 N 1.34773 * 120.00088 * 47.61583 * 6 5 4 9 9 C 1.46498 * 120.00019 * 355.07245 * 8 6 5 10 10 C 1.46498 * 119.99656 * 175.07612 * 8 6 5 11 11 H 1.08997 * 109.47695 * 359.97438 * 10 8 6 12 12 C 1.53000 * 109.46797 * 239.99947 * 10 8 6 13 13 C 1.50703 * 109.47387 * 120.00220 * 10 8 6 14 14 H 1.07999 * 119.99489 * 359.97438 * 13 10 8 15 15 C 1.37877 * 120.00193 * 179.97438 * 13 10 8 16 16 N 1.31520 * 119.99690 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 119.99841 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.46841 * 60.00439 * 17 15 13 19 19 H 1.48500 * 109.46917 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47345 * 300.00137 * 17 15 13 21 21 C 1.41290 * 107.17101 * 359.60657 * 5 4 3 22 22 C 1.50699 * 125.98838 * 180.27669 * 21 5 4 23 23 F 1.39905 * 109.47215 * 89.99749 * 22 21 5 24 24 F 1.39894 * 109.47514 * 209.99997 * 22 21 5 25 25 F 1.39905 * 109.47332 * 330.00406 * 22 21 5 26 26 N 1.30448 * 108.02399 * 0.24008 * 21 5 4 27 27 H 1.09004 * 109.46902 * 60.00489 * 1 2 3 28 28 H 1.09001 * 109.47456 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47095 * 300.00513 * 1 2 3 30 30 H 1.08995 * 109.47415 * 239.99344 * 2 1 3 31 31 H 1.09004 * 109.46902 * 119.99510 * 2 1 3 32 32 H 1.07999 * 126.28587 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.46971 * 274.43328 * 9 8 6 34 34 H 1.08996 * 109.46954 * 34.43648 * 9 8 6 35 35 H 1.09002 * 109.46515 * 154.43332 * 9 8 6 36 36 H 1.09004 * 109.47147 * 299.99771 * 12 10 8 37 37 H 1.09002 * 109.47254 * 180.02562 * 12 10 8 38 38 H 1.08998 * 109.47396 * 60.00081 * 12 10 8 39 39 H 0.96999 * 119.99044 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8730 1.9112 0.8895 5 6 3.0708 3.2310 0.5368 6 6 3.9324 4.2035 1.2336 7 8 3.5082 5.3124 1.4969 8 7 5.1900 3.8634 1.5790 9 6 5.6652 2.4951 1.3598 10 6 6.0816 4.8622 2.1736 11 1 5.5569 5.8138 2.2575 12 6 7.3154 5.0372 1.2859 13 6 6.5096 4.4016 3.5432 14 1 6.1527 3.4594 3.9320 15 6 7.3567 5.1831 4.2999 16 7 7.7917 6.3304 3.8262 17 14 7.8865 4.6125 5.9979 18 1 8.6011 3.3157 5.8836 19 1 8.7915 5.6243 6.6000 20 1 6.6889 4.4436 6.8594 21 6 2.2978 3.4737 -0.6208 22 6 2.2069 4.7797 -1.3671 23 9 3.1975 4.8228 -2.3541 24 9 0.9472 4.8881 -1.9658 25 9 2.3918 5.8409 -0.4743 26 7 1.6772 2.3689 -0.9307 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.3210 1.3997 1.7286 33 1 5.3845 1.8726 2.2093 34 1 5.2145 2.0951 0.4515 35 1 6.7502 2.4998 1.2554 36 1 7.8404 4.0857 1.2017 37 1 7.9791 5.7800 1.7285 38 1 7.0060 5.3704 0.2952 39 1 8.3880 6.8799 4.3585 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548530009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:34 Heat of formation + Delta-G solvation = -98.317194 kcal Electronic energy + Delta-G solvation = -28134.493353 eV Core-core repulsion = 23664.768623 eV Total energy + Delta-G solvation = -4469.724730 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.89385 -47.48485 -47.28695 -41.69606 -38.67960 -35.36487 -34.89817 -32.92410 -31.27646 -30.42520 -28.85069 -26.72486 -26.22734 -25.20401 -23.90741 -22.62170 -21.24287 -20.45761 -18.93952 -18.31599 -17.96499 -17.56563 -16.83927 -16.37722 -16.01980 -15.68754 -15.33792 -14.61940 -14.39721 -14.34568 -14.12114 -14.02794 -13.82111 -13.75215 -13.45828 -13.41715 -13.09907 -12.76121 -12.63471 -12.53452 -12.34729 -12.01035 -11.86609 -11.56424 -11.55065 -11.16834 -11.05620 -10.81762 -10.66931 -10.26332 -10.15665 -9.94784 -9.18801 -9.11993 -8.75330 -8.41159 -7.58544 -6.05602 -4.13761 1.35285 1.78754 1.86013 2.82711 3.27821 3.33682 3.34511 3.45358 3.69174 4.00308 4.07078 4.33882 4.41240 4.50652 4.56139 4.57658 4.75675 5.02891 5.17300 5.24973 5.29654 5.34726 5.41935 5.68256 5.71787 5.87879 5.97840 6.23585 6.52485 6.78893 6.85813 7.07143 7.09471 7.44894 7.53520 7.72281 8.02867 8.20677 8.51512 8.83912 9.04783 9.52420 10.99676 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.015634 B = 0.004347 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.532410 B = 6439.943895 C = 7593.010102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.125 3.875 3 N -0.346 5.346 4 C 0.095 3.905 5 C -0.224 4.224 6 C 0.569 3.431 7 O -0.526 6.526 8 N -0.585 5.585 9 C 0.086 3.914 10 C 0.259 3.741 11 H 0.066 0.934 12 C -0.148 4.148 13 C -0.525 4.525 14 H 0.058 0.942 15 C 0.065 3.935 16 N -0.887 5.887 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.023 3.977 22 C 0.549 3.451 23 F -0.171 7.171 24 F -0.174 7.174 25 F -0.136 7.136 26 N -0.244 5.244 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.195 0.805 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.030 0.970 37 H 0.095 0.905 38 H 0.013 0.987 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.551 -14.226 -8.971 19.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.005 3.995 3 N -0.128 5.128 4 C -0.053 4.053 5 C -0.239 4.239 6 C 0.353 3.647 7 O -0.403 6.403 8 N -0.316 5.316 9 C -0.058 4.058 10 C 0.160 3.840 11 H 0.084 0.916 12 C -0.206 4.206 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.144 4.144 22 C 0.492 3.508 23 F -0.152 7.152 24 F -0.155 7.155 25 F -0.117 7.117 26 N -0.067 5.067 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.212 0.788 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.049 0.951 37 H 0.113 0.887 38 H 0.032 0.968 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.472 -14.136 -9.589 20.576 hybrid contribution 0.918 -0.044 1.439 1.708 sum -10.554 -14.181 -8.149 19.465 Atomic orbital electron populations 1.22092 0.93221 1.03267 1.04044 1.21944 0.96627 0.76215 1.04713 1.48583 1.34022 1.10256 1.19925 1.23240 0.93359 0.93021 0.95690 1.20402 1.07855 0.95130 1.00537 1.17209 0.81696 0.86180 0.79607 1.90808 1.73047 1.21798 1.54643 1.48114 1.11811 1.11902 1.59751 1.21630 1.01480 0.83921 0.98778 1.18982 0.86171 0.88114 0.90773 0.91639 1.22111 1.00598 1.01263 0.96650 1.21250 1.28785 1.06109 1.00211 0.92380 1.24886 0.95889 0.94785 0.98181 1.69872 1.33510 1.11613 1.37488 0.86559 0.78453 0.78272 0.84086 1.20316 1.21190 1.20289 1.22050 1.00554 0.94136 0.97709 1.16942 0.73965 0.83066 0.76778 1.93231 1.62138 1.96726 1.63153 1.93201 1.41297 1.96541 1.84452 1.93445 1.94634 1.56904 1.66694 1.77005 1.21133 0.95823 1.12772 0.90831 0.90261 0.91709 0.88884 0.87673 0.78806 0.93618 0.93184 0.90461 0.95132 0.88699 0.96831 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 10.09 37.16 0.37 -0.65 16 2 C 0.12 0.78 7.21 -4.04 -0.03 0.75 16 3 N -0.35 -3.88 3.65 -60.81 -0.22 -4.11 16 4 C 0.10 1.18 9.40 -16.56 -0.16 1.03 16 5 C -0.22 -3.81 5.03 -105.07 -0.53 -4.34 16 6 C 0.57 12.15 7.22 -12.52 -0.09 12.06 16 7 O -0.53 -13.29 13.71 5.27 0.07 -13.22 16 8 N -0.58 -12.39 2.75 -176.53 -0.49 -12.88 16 9 C 0.09 1.38 8.48 59.85 0.51 1.89 16 10 C 0.26 6.57 2.63 -69.08 -0.18 6.39 16 11 H 0.07 1.93 6.91 -51.93 -0.36 1.57 16 12 C -0.15 -3.52 8.96 37.16 0.33 -3.19 16 13 C -0.52 -13.90 8.37 -34.44 -0.29 -14.19 16 14 H 0.06 1.49 7.65 -52.49 -0.40 1.09 16 15 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 17 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.02 0.39 6.60 -82.02 -0.54 -0.16 16 22 C 0.55 9.42 3.51 36.01 0.13 9.55 16 23 F -0.17 -2.87 17.30 2.25 0.04 -2.83 16 24 F -0.17 -2.75 17.25 2.25 0.04 -2.71 16 25 F -0.14 -2.70 14.07 2.25 0.03 -2.66 16 26 N -0.24 -3.54 12.27 33.89 0.42 -3.12 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.11 0.36 8.06 -51.93 -0.42 -0.06 16 32 H 0.20 1.78 7.13 -52.49 -0.37 1.40 16 33 H 0.05 0.65 7.60 -51.93 -0.39 0.25 16 34 H 0.05 0.68 6.20 -51.93 -0.32 0.36 16 35 H 0.08 1.28 6.43 -51.93 -0.33 0.94 16 36 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 37 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 38 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -33.00 337.68 -4.50 -37.50 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.51 Total: -3.27 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -0.57 Total: 10.80 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.34 Total: -44.37 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.07 Total: -13.22 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 0.11 Total: -8.21 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.00 -4.50 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548530009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.821 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds