Wall clock time and date at job start Tue Mar 31 2020 14:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47486 * 2 1 4 4 C 1.34259 * 125.76125 * 125.26614 * 3 2 1 5 5 C 1.38039 * 107.41810 * 180.14523 * 4 3 2 6 6 C 1.47434 * 126.41258 * 179.87343 * 5 4 3 7 7 O 1.21611 * 119.99455 * 227.62093 * 6 5 4 8 8 N 1.34773 * 120.00088 * 47.61583 * 6 5 4 9 9 C 1.46498 * 120.00019 * 355.07245 * 8 6 5 10 10 C 1.46498 * 119.99656 * 175.07612 * 8 6 5 11 11 H 1.08997 * 109.47695 * 359.97438 * 10 8 6 12 12 C 1.53000 * 109.46797 * 239.99947 * 10 8 6 13 13 C 1.50703 * 109.47387 * 120.00220 * 10 8 6 14 14 H 1.07999 * 119.99489 * 359.97438 * 13 10 8 15 15 C 1.37877 * 120.00193 * 179.97438 * 13 10 8 16 16 N 1.31520 * 119.99690 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 119.99841 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.46841 * 60.00439 * 17 15 13 19 19 H 1.48500 * 109.46917 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47345 * 300.00137 * 17 15 13 21 21 C 1.41290 * 107.17101 * 359.60657 * 5 4 3 22 22 C 1.50699 * 125.98838 * 180.27669 * 21 5 4 23 23 F 1.39905 * 109.47215 * 89.99749 * 22 21 5 24 24 F 1.39894 * 109.47514 * 209.99997 * 22 21 5 25 25 F 1.39905 * 109.47332 * 330.00406 * 22 21 5 26 26 N 1.30448 * 108.02399 * 0.24008 * 21 5 4 27 27 H 1.09004 * 109.46902 * 60.00489 * 1 2 3 28 28 H 1.09001 * 109.47456 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47095 * 300.00513 * 1 2 3 30 30 H 1.08995 * 109.47415 * 239.99344 * 2 1 3 31 31 H 1.09004 * 109.46902 * 119.99510 * 2 1 3 32 32 H 1.07999 * 126.28587 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.46971 * 274.43328 * 9 8 6 34 34 H 1.08996 * 109.46954 * 34.43648 * 9 8 6 35 35 H 1.09002 * 109.46515 * 154.43332 * 9 8 6 36 36 H 1.09004 * 109.47147 * 299.99771 * 12 10 8 37 37 H 1.09002 * 109.47254 * 180.02562 * 12 10 8 38 38 H 1.08998 * 109.47396 * 60.00081 * 12 10 8 39 39 H 0.96999 * 119.99044 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8730 1.9112 0.8895 5 6 3.0708 3.2310 0.5368 6 6 3.9324 4.2035 1.2336 7 8 3.5082 5.3124 1.4969 8 7 5.1900 3.8634 1.5790 9 6 5.6652 2.4951 1.3598 10 6 6.0816 4.8622 2.1736 11 1 5.5569 5.8138 2.2575 12 6 7.3154 5.0372 1.2859 13 6 6.5096 4.4016 3.5432 14 1 6.1527 3.4594 3.9320 15 6 7.3567 5.1831 4.2999 16 7 7.7917 6.3304 3.8262 17 14 7.8865 4.6125 5.9979 18 1 8.6011 3.3157 5.8836 19 1 8.7915 5.6243 6.6000 20 1 6.6889 4.4436 6.8594 21 6 2.2978 3.4737 -0.6208 22 6 2.2069 4.7797 -1.3671 23 9 3.1975 4.8228 -2.3541 24 9 0.9472 4.8881 -1.9658 25 9 2.3918 5.8409 -0.4743 26 7 1.6772 2.3689 -0.9307 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.3210 1.3997 1.7286 33 1 5.3845 1.8726 2.2093 34 1 5.2145 2.0951 0.4515 35 1 6.7502 2.4998 1.2554 36 1 7.8404 4.0857 1.2017 37 1 7.9791 5.7800 1.7285 38 1 7.0060 5.3704 0.2952 39 1 8.3880 6.8799 4.3585 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548530009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:33 Heat of formation + Delta-G solvation = -119.993054 kcal Electronic energy + Delta-G solvation = -28135.433289 eV Core-core repulsion = 23664.768623 eV Total energy + Delta-G solvation = -4470.664666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.25470 -48.80936 -48.71414 -42.78773 -40.29227 -37.08699 -35.74690 -34.79145 -32.47377 -31.65024 -30.39001 -27.87853 -27.63294 -27.23620 -24.96309 -23.81934 -22.50071 -21.77306 -20.41171 -19.67044 -19.32584 -18.85488 -18.42818 -17.89756 -17.38515 -16.93608 -16.66427 -16.11350 -15.86705 -15.65807 -15.57406 -15.18000 -14.99323 -14.89206 -14.87666 -14.80540 -14.62257 -14.31597 -13.85512 -13.55110 -13.46380 -13.31075 -13.06030 -12.97506 -12.86693 -12.72501 -12.57204 -12.55042 -12.12858 -12.08790 -12.00765 -11.14313 -10.92313 -10.79246 -10.46206 -9.93352 -9.28155 -8.08504 -6.25089 0.31151 0.60706 0.82014 1.46249 1.48956 1.56050 1.64922 1.95872 2.32458 2.46355 2.61221 2.83747 3.19787 3.22066 3.51137 3.67707 3.92283 4.06943 4.19055 4.28001 4.37740 4.44749 4.60452 4.73769 4.78544 4.83588 4.92225 4.93166 5.05566 5.10405 5.26902 5.51134 5.65162 5.70044 5.72298 6.01504 6.08366 6.20673 6.81921 6.83963 7.35168 7.51452 8.95911 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.015634 B = 0.004347 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.532410 B = 6439.943895 C = 7593.010102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.327 5.327 4 C 0.130 3.870 5 C -0.261 4.261 6 C 0.564 3.436 7 O -0.582 6.582 8 N -0.591 5.591 9 C 0.081 3.919 10 C 0.263 3.737 11 H 0.008 0.992 12 C -0.134 4.134 13 C -0.533 4.533 14 H 0.067 0.933 15 C 0.013 3.987 16 N -0.920 5.920 17 Si 0.966 3.034 18 H -0.260 1.260 19 H -0.289 1.289 20 H -0.277 1.277 21 C 0.007 3.993 22 C 0.545 3.455 23 F -0.173 7.173 24 F -0.168 7.168 25 F -0.158 7.158 26 N -0.251 5.251 27 H 0.051 0.949 28 H 0.109 0.891 29 H 0.052 0.948 30 H 0.113 0.887 31 H 0.147 0.853 32 H 0.236 0.764 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.015 0.985 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.746 -18.661 -8.341 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.006 4.006 3 N -0.108 5.108 4 C -0.021 4.021 5 C -0.276 4.276 6 C 0.351 3.649 7 O -0.463 6.463 8 N -0.321 5.321 9 C -0.061 4.061 10 C 0.162 3.838 11 H 0.026 0.974 12 C -0.192 4.192 13 C -0.572 4.572 14 H 0.086 0.914 15 C -0.186 4.186 16 N -0.559 5.559 17 Si 0.791 3.209 18 H -0.184 1.184 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.159 4.159 22 C 0.489 3.511 23 F -0.154 7.154 24 F -0.150 7.150 25 F -0.139 7.139 26 N -0.075 5.075 27 H 0.070 0.930 28 H 0.127 0.873 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.165 0.835 32 H 0.252 0.748 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.034 0.966 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.684 -18.646 -9.000 23.774 hybrid contribution 0.880 1.237 1.184 1.926 sum -10.804 -17.408 -7.816 21.929 Atomic orbital electron populations 1.22093 0.93226 1.04735 1.02405 1.22595 0.96666 0.73468 1.07822 1.49093 1.32392 1.11149 1.18132 1.23672 0.91767 0.91105 0.95554 1.20010 1.09434 0.96424 1.01745 1.17774 0.81886 0.86280 0.78913 1.90768 1.74239 1.24523 1.56736 1.48071 1.11448 1.13211 1.59353 1.21920 1.01394 0.81390 1.01383 1.18563 0.86492 0.87207 0.91585 0.97368 1.21905 0.99708 1.01482 0.96135 1.21536 1.28516 1.06363 1.00742 0.91441 1.25764 0.96039 0.94792 1.02043 1.70038 1.34125 1.12822 1.38930 0.85488 0.77914 0.78325 0.79128 1.18405 1.21444 1.20219 1.21858 1.01649 0.94244 0.98145 1.17107 0.74086 0.83301 0.76648 1.93215 1.62253 1.96762 1.63168 1.93199 1.40864 1.96556 1.84332 1.93400 1.94801 1.58203 1.67526 1.76975 1.20829 0.95812 1.13887 0.92982 0.87255 0.92838 0.86844 0.83496 0.74757 0.90813 0.90249 0.90930 0.93059 0.91283 0.96595 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.09 71.98 0.73 -0.69 16 2 C 0.11 0.81 7.21 86.38 0.62 1.43 16 3 N -0.33 -6.05 3.65 -346.32 -1.26 -7.31 16 4 C 0.13 2.70 9.40 84.27 0.79 3.49 16 5 C -0.26 -8.56 5.03 -20.15 -0.10 -8.66 16 6 C 0.56 24.52 7.22 86.67 0.63 25.15 16 7 O -0.58 -31.16 13.71 -4.07 -0.06 -31.21 16 8 N -0.59 -24.91 2.75 -830.68 -2.29 -27.19 16 9 C 0.08 2.37 8.48 127.77 1.08 3.46 16 10 C 0.26 13.72 2.63 44.25 0.12 13.84 16 11 H 0.01 0.53 6.91 -2.39 -0.02 0.51 16 12 C -0.13 -6.52 8.96 71.98 0.64 -5.87 16 13 C -0.53 -28.24 8.37 25.60 0.21 -28.03 16 14 H 0.07 3.36 7.65 -2.91 -0.02 3.34 16 15 C 0.01 0.70 5.30 84.65 0.45 1.15 16 16 N -0.92 -53.09 11.32 21.45 0.24 -52.84 16 17 Si 0.97 42.11 29.54 68.60 2.03 44.14 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 19 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 21 C 0.01 0.25 6.60 43.51 0.29 0.53 16 22 C 0.54 19.32 3.51 71.24 0.25 19.57 16 23 F -0.17 -5.98 17.30 44.97 0.78 -5.20 16 24 F -0.17 -5.46 17.25 44.97 0.78 -4.68 16 25 F -0.16 -6.70 14.07 44.97 0.63 -6.07 16 26 N -0.25 -6.80 12.27 -46.68 -0.57 -7.38 16 27 H 0.05 0.68 8.14 -2.38 -0.02 0.67 16 28 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.15 -0.03 8.06 -2.38 -0.02 -0.05 16 32 H 0.24 2.84 7.13 -2.91 -0.02 2.82 16 33 H 0.07 1.75 7.60 -2.39 -0.02 1.73 16 34 H 0.08 1.85 6.20 -2.39 -0.01 1.84 16 35 H 0.07 2.20 6.43 -2.39 -0.02 2.18 16 36 H 0.05 2.22 6.66 -2.38 -0.02 2.21 16 37 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 38 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -77.69 337.68 7.08 -70.61 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: 1.10 Total: 1.77 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: 5.71 Total: 25.37 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -3.88 Total: -94.72 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.06 Total: -31.21 kcal Atomic # 9 Polarization: -18.14 SS G_CDS: 2.19 Total: -15.95 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -77.69 7.08 -70.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548530009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.382 kcal (2) G-P(sol) polarization free energy of solvation -77.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds