Wall clock time and date at job start Tue Mar 31 2020 14:09:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46499 * 109.47701 * 2 1
4 4 C 1.34253 * 125.75905 * 125.26713 * 3 2 1
5 5 C 1.38042 * 107.41842 * 180.14920 * 4 3 2
6 6 C 1.47429 * 126.41415 * 179.87223 * 5 4 3
7 7 O 1.21604 * 120.00173 * 140.80025 * 6 5 4
8 8 N 1.34776 * 119.99869 * 320.79884 * 6 5 4
9 9 C 1.46501 * 120.00310 * 4.77781 * 8 6 5
10 10 C 1.46500 * 120.00098 * 184.77753 * 8 6 5
11 11 H 1.08999 * 109.46943 * 359.97438 * 10 8 6
12 12 C 1.53003 * 109.47334 * 119.99791 * 10 8 6
13 13 C 1.50702 * 109.47373 * 240.00174 * 10 8 6
14 14 H 1.08001 * 119.99608 * 359.97438 * 13 10 8
15 15 C 1.37876 * 120.00194 * 179.97438 * 13 10 8
16 16 N 1.31515 * 119.99852 * 179.97438 * 15 13 10
17 17 Si 1.86797 * 120.00148 * 359.97438 * 15 13 10
18 18 H 1.48501 * 109.47306 * 89.99806 * 17 15 13
19 19 H 1.48495 * 109.47344 * 210.00301 * 17 15 13
20 20 H 1.48501 * 109.46881 * 330.00237 * 17 15 13
21 21 C 1.41284 * 107.17166 * 359.60321 * 5 4 3
22 22 C 1.50700 * 125.99051 * 180.27783 * 21 5 4
23 23 F 1.39901 * 109.46884 * 90.00319 * 22 21 5
24 24 F 1.39899 * 109.47438 * 210.00299 * 22 21 5
25 25 F 1.39903 * 109.46966 * 330.00305 * 22 21 5
26 26 N 1.30450 * 108.02432 * 0.24769 * 21 5 4
27 27 H 1.09004 * 109.47046 * 59.99684 * 1 2 3
28 28 H 1.08999 * 109.47628 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.47153 * 300.00675 * 1 2 3
30 30 H 1.09006 * 109.47015 * 239.99846 * 2 1 3
31 31 H 1.09004 * 109.47046 * 120.00316 * 2 1 3
32 32 H 1.08007 * 126.28704 * 359.97438 * 4 3 2
33 33 H 1.08998 * 109.47081 * 90.33087 * 9 8 6
34 34 H 1.09003 * 109.46911 * 330.32878 * 9 8 6
35 35 H 1.09001 * 109.47110 * 210.33249 * 9 8 6
36 36 H 1.08998 * 109.46780 * 180.02562 * 12 10 8
37 37 H 1.08998 * 109.46934 * 300.00124 * 12 10 8
38 38 H 1.08996 * 109.46683 * 60.00124 * 12 10 8
39 39 H 0.96997 * 119.99513 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.8730 1.9111 0.8895
5 6 3.0708 3.2309 0.5368
6 6 3.9324 4.2033 1.2337
7 8 4.5944 4.9975 0.5935
8 7 3.9863 4.2122 2.5804
9 6 3.2716 3.1899 3.3488
10 6 4.7595 5.2440 3.2758
11 1 5.2174 5.9098 2.5442
12 6 3.8315 6.0488 4.1880
13 6 5.8365 4.5920 4.1041
14 1 5.9349 3.5165 4.1120
15 6 6.6963 5.3685 4.8517
16 7 7.6358 4.7994 5.5749
17 14 6.5266 7.2287 4.8375
18 1 5.6017 7.6497 5.9202
19 1 7.8582 7.8489 5.0549
20 1 5.9850 7.6662 3.5258
21 6 2.2979 3.4738 -0.6207
22 6 2.2070 4.7798 -1.3669
23 9 3.1976 4.8229 -2.3539
24 9 0.9472 4.8882 -1.9656
25 9 2.3919 5.8409 -0.4741
26 7 1.6772 2.3691 -0.9306
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3634 0.5140 0.8899
30 1 1.8933 -0.5139 -0.8900
31 1 1.8933 -0.5139 0.8900
32 1 3.3210 1.3995 1.7286
33 1 3.9278 2.3356 3.5151
34 1 2.3901 2.8685 2.7941
35 1 2.9653 3.6051 4.3090
36 1 4.4068 6.8168 4.7050
37 1 3.0526 6.5204 3.5889
38 1 3.3741 5.3828 4.9195
39 1 8.2408 5.3457 6.1006
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001548530011.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:09:39
Heat of formation + Delta-G solvation = -88.765631 kcal
Electronic energy + Delta-G solvation = -28216.976851 eV
Core-core repulsion = 23747.666308 eV
Total energy + Delta-G solvation = -4469.310543 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.125 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-49.96926 -47.52262 -47.42306 -41.79239 -38.87602 -35.59068 -34.95865 -32.92796
-31.44973 -30.77411 -29.43022 -26.80539 -26.44633 -25.14609 -23.97498 -22.73513
-21.39938 -20.54234 -19.02646 -18.36431 -18.08177 -17.60463 -17.03537 -16.64254
-16.10667 -15.76729 -15.55731 -14.83866 -14.50539 -14.44464 -14.21883 -13.94891
-13.84060 -13.79656 -13.58603 -13.54522 -13.26500 -12.91806 -12.81265 -12.59629
-12.36649 -12.24382 -12.13474 -12.02415 -11.76739 -11.62674 -11.24507 -11.11015
-10.68180 -10.13594 -9.99963 -9.67110 -9.38395 -9.22857 -8.84723 -8.63219
-7.75707 -6.14980 -4.15535 1.28577 1.71782 1.73263 2.75427 3.24701
3.38848 3.41384 3.42912 3.61957 3.83377 3.98327 4.29575 4.36177
4.46574 4.50520 4.50970 4.73454 4.93264 5.13930 5.16878 5.22802
5.24121 5.36566 5.54310 5.66519 5.80025 5.89105 6.11589 6.25031
6.33215 6.45578 6.47711 6.84920 7.01221 7.12681 7.32238 7.62390
8.14508 8.44778 8.82570 8.88323 9.46333 10.97671
Molecular weight = 319.12amu
Principal moments of inertia in cm(-1)
A = 0.015909 B = 0.004578 C = 0.003850
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1759.565444 B = 6114.507865 C = 7271.345395
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.124 3.876
3 N -0.345 5.345
4 C 0.099 3.901
5 C -0.230 4.230
6 C 0.577 3.423
7 O -0.534 6.534
8 N -0.579 5.579
9 C 0.081 3.919
10 C 0.231 3.769
11 H 0.065 0.935
12 C -0.162 4.162
13 C -0.526 4.526
14 H 0.078 0.922
15 C 0.076 3.924
16 N -0.896 5.896
17 Si 0.882 3.118
18 H -0.277 1.277
19 H -0.294 1.294
20 H -0.262 1.262
21 C 0.026 3.974
22 C 0.558 3.442
23 F -0.163 7.163
24 F -0.174 7.174
25 F -0.152 7.152
26 N -0.243 5.243
27 H 0.072 0.928
28 H 0.079 0.921
29 H 0.064 0.936
30 H 0.093 0.907
31 H 0.107 0.893
32 H 0.199 0.801
33 H 0.054 0.946
34 H 0.056 0.944
35 H 0.076 0.924
36 H 0.051 0.949
37 H 0.035 0.965
38 H 0.056 0.944
39 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.796 -10.044 -9.215 20.864
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.004 3.996
3 N -0.127 5.127
4 C -0.050 4.050
5 C -0.245 4.245
6 C 0.363 3.637
7 O -0.412 6.412
8 N -0.309 5.309
9 C -0.063 4.063
10 C 0.129 3.871
11 H 0.083 0.917
12 C -0.220 4.220
13 C -0.564 4.564
14 H 0.096 0.904
15 C -0.127 4.127
16 N -0.533 5.533
17 Si 0.711 3.289
18 H -0.204 1.204
19 H -0.221 1.221
20 H -0.186 1.186
21 C -0.142 4.142
22 C 0.501 3.499
23 F -0.144 7.144
24 F -0.155 7.155
25 F -0.133 7.133
26 N -0.066 5.066
27 H 0.091 0.909
28 H 0.098 0.902
29 H 0.083 0.917
30 H 0.111 0.889
31 H 0.125 0.875
32 H 0.216 0.784
33 H 0.073 0.927
34 H 0.074 0.926
35 H 0.094 0.906
36 H 0.070 0.930
37 H 0.054 0.946
38 H 0.075 0.925
39 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -16.137 -10.267 -10.226 21.689
hybrid contribution 0.565 1.263 0.762 1.580
sum -15.573 -9.004 -9.464 20.326
Atomic orbital electron populations
1.22086 0.93100 1.03351 1.04018 1.21978 0.96668 0.76103 1.04875
1.48624 1.33803 1.10330 1.19929 1.23435 0.92878 0.93414 0.95254
1.20297 1.08480 0.95573 1.00138 1.17128 0.81274 0.83002 0.82339
1.90783 1.43767 1.40899 1.65730 1.47681 1.49070 1.29925 1.04262
1.21809 0.95140 0.92135 0.97225 1.19330 0.89251 0.86517 0.91960
0.91686 1.22464 0.99467 0.99912 1.00152 1.21127 1.13094 0.95600
1.26618 0.90370 1.24847 0.94665 0.98513 0.94633 1.69869 1.18464
1.35858 1.29120 0.86934 0.76524 0.86133 0.79261 1.20407 1.22136
1.18631 1.22039 1.00746 0.94230 0.97157 1.16756 0.73881 0.82419
0.76818 1.93246 1.61922 1.96599 1.62668 1.93208 1.41330 1.96519
1.84449 1.93306 1.94830 1.57570 1.67581 1.77021 1.21544 0.95723
1.12336 0.90852 0.90193 0.91660 0.88868 0.87516 0.78428 0.92744
0.92587 0.90553 0.93050 0.94627 0.92541 0.92445
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.91 10.09 37.15 0.37 -0.54 16
2 C 0.12 0.73 7.21 -4.05 -0.03 0.70 16
3 N -0.35 -3.72 3.65 -60.81 -0.22 -3.94 16
4 C 0.10 1.18 9.09 -16.56 -0.15 1.03 16
5 C -0.23 -3.77 5.30 -105.07 -0.56 -4.33 16
6 C 0.58 11.89 6.78 -12.52 -0.08 11.80 16
7 O -0.53 -13.04 14.83 5.27 0.08 -12.96 16
8 N -0.58 -11.74 2.75 -176.53 -0.49 -12.23 16
9 C 0.08 1.22 8.35 59.85 0.50 1.72 16
10 C 0.23 5.52 2.22 -69.08 -0.15 5.36 16
11 H 0.07 1.74 5.96 -51.93 -0.31 1.43 16
12 C -0.16 -3.45 8.65 37.16 0.32 -3.13 16
13 C -0.53 -14.24 8.95 -34.44 -0.31 -14.55 16
14 H 0.08 2.25 7.89 -52.49 -0.41 1.83 16
15 C 0.08 2.14 5.45 -17.82 -0.10 2.05 16
16 N -0.90 -26.59 13.96 55.43 0.77 -25.82 16
17 Si 0.88 21.72 24.37 -169.99 -4.14 17.57 16
18 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16
19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
20 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16
21 C 0.03 0.42 6.60 -82.02 -0.54 -0.12 16
22 C 0.56 9.27 3.32 36.01 0.12 9.39 16
23 F -0.16 -2.80 17.30 2.25 0.04 -2.76 16
24 F -0.17 -2.61 17.25 2.25 0.04 -2.57 16
25 F -0.15 -2.80 14.96 2.25 0.03 -2.76 16
26 N -0.24 -3.41 12.27 33.89 0.42 -2.99 16
27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
28 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16
29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16
30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16
31 H 0.11 0.33 8.06 -51.93 -0.42 -0.09 16
32 H 0.20 1.75 6.56 -52.48 -0.34 1.40 16
33 H 0.05 0.77 7.67 -51.93 -0.40 0.38 16
34 H 0.06 0.68 5.50 -51.93 -0.29 0.39 16
35 H 0.08 1.16 6.43 -51.93 -0.33 0.83 16
36 H 0.05 1.14 3.28 -51.93 -0.17 0.97 16
37 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16
38 H 0.06 1.10 6.66 -51.93 -0.35 0.75 16
39 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16
LS Contribution 330.89 15.07 4.99 4.99
Total: -1.00 -34.51 330.89 -3.41 -37.91
By element:
Atomic # 1 Polarization: 0.49 SS G_CDS: -4.31 Total: -3.83 kcal
Atomic # 6 Polarization: 9.99 SS G_CDS: -0.61 Total: 9.39 kcal
Atomic # 7 Polarization: -45.46 SS G_CDS: 0.48 Total: -44.98 kcal
Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.96 kcal
Atomic # 9 Polarization: -8.20 SS G_CDS: 0.11 Total: -8.09 kcal
Atomic # 14 Polarization: 21.72 SS G_CDS: -4.14 Total: 17.57 kcal
Total LS contribution 4.99 Total: 4.99 kcal
Total: -34.51 -3.41 -37.91 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001548530011.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.853 kcal
(2) G-P(sol) polarization free energy of solvation -34.507 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.360 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.406 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.766 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds