Wall clock time and date at job start Tue Mar 31 2020 14:09:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46499 * 109.47701 * 2 1
4 4 C 1.34253 * 125.75905 * 125.26713 * 3 2 1
5 5 C 1.38042 * 107.41842 * 180.14920 * 4 3 2
6 6 C 1.47429 * 126.41415 * 179.87223 * 5 4 3
7 7 O 1.21604 * 120.00173 * 140.80025 * 6 5 4
8 8 N 1.34776 * 119.99869 * 320.79884 * 6 5 4
9 9 C 1.46501 * 120.00310 * 4.77781 * 8 6 5
10 10 C 1.46500 * 120.00098 * 184.77753 * 8 6 5
11 11 H 1.08999 * 109.46943 * 359.97438 * 10 8 6
12 12 C 1.53003 * 109.47334 * 119.99791 * 10 8 6
13 13 C 1.50702 * 109.47373 * 240.00174 * 10 8 6
14 14 H 1.08001 * 119.99608 * 359.97438 * 13 10 8
15 15 C 1.37876 * 120.00194 * 179.97438 * 13 10 8
16 16 N 1.31515 * 119.99852 * 179.97438 * 15 13 10
17 17 Si 1.86797 * 120.00148 * 359.97438 * 15 13 10
18 18 H 1.48501 * 109.47306 * 89.99806 * 17 15 13
19 19 H 1.48495 * 109.47344 * 210.00301 * 17 15 13
20 20 H 1.48501 * 109.46881 * 330.00237 * 17 15 13
21 21 C 1.41284 * 107.17166 * 359.60321 * 5 4 3
22 22 C 1.50700 * 125.99051 * 180.27783 * 21 5 4
23 23 F 1.39901 * 109.46884 * 90.00319 * 22 21 5
24 24 F 1.39899 * 109.47438 * 210.00299 * 22 21 5
25 25 F 1.39903 * 109.46966 * 330.00305 * 22 21 5
26 26 N 1.30450 * 108.02432 * 0.24769 * 21 5 4
27 27 H 1.09004 * 109.47046 * 59.99684 * 1 2 3
28 28 H 1.08999 * 109.47628 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.47153 * 300.00675 * 1 2 3
30 30 H 1.09006 * 109.47015 * 239.99846 * 2 1 3
31 31 H 1.09004 * 109.47046 * 120.00316 * 2 1 3
32 32 H 1.08007 * 126.28704 * 359.97438 * 4 3 2
33 33 H 1.08998 * 109.47081 * 90.33087 * 9 8 6
34 34 H 1.09003 * 109.46911 * 330.32878 * 9 8 6
35 35 H 1.09001 * 109.47110 * 210.33249 * 9 8 6
36 36 H 1.08998 * 109.46780 * 180.02562 * 12 10 8
37 37 H 1.08998 * 109.46934 * 300.00124 * 12 10 8
38 38 H 1.08996 * 109.46683 * 60.00124 * 12 10 8
39 39 H 0.96997 * 119.99513 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.8730 1.9111 0.8895
5 6 3.0708 3.2309 0.5368
6 6 3.9324 4.2033 1.2337
7 8 4.5944 4.9975 0.5935
8 7 3.9863 4.2122 2.5804
9 6 3.2716 3.1899 3.3488
10 6 4.7595 5.2440 3.2758
11 1 5.2174 5.9098 2.5442
12 6 3.8315 6.0488 4.1880
13 6 5.8365 4.5920 4.1041
14 1 5.9349 3.5165 4.1120
15 6 6.6963 5.3685 4.8517
16 7 7.6358 4.7994 5.5749
17 14 6.5266 7.2287 4.8375
18 1 5.6017 7.6497 5.9202
19 1 7.8582 7.8489 5.0549
20 1 5.9850 7.6662 3.5258
21 6 2.2979 3.4738 -0.6207
22 6 2.2070 4.7798 -1.3669
23 9 3.1976 4.8229 -2.3539
24 9 0.9472 4.8882 -1.9656
25 9 2.3919 5.8409 -0.4741
26 7 1.6772 2.3691 -0.9306
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3634 0.5140 0.8899
30 1 1.8933 -0.5139 -0.8900
31 1 1.8933 -0.5139 0.8900
32 1 3.3210 1.3995 1.7286
33 1 3.9278 2.3356 3.5151
34 1 2.3901 2.8685 2.7941
35 1 2.9653 3.6051 4.3090
36 1 4.4068 6.8168 4.7050
37 1 3.0526 6.5204 3.5889
38 1 3.3741 5.3828 4.9195
39 1 8.2408 5.3457 6.1006
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001548530011.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:09:38
Heat of formation + Delta-G solvation = -113.163638 kcal
Electronic energy + Delta-G solvation = -28218.034828 eV
Core-core repulsion = 23747.666308 eV
Total energy + Delta-G solvation = -4470.368520 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.125 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-51.27066 -48.79305 -48.77759 -42.85191 -40.42328 -37.25255 -35.76033 -34.81653
-32.93351 -31.87026 -30.70972 -27.93546 -27.75909 -27.11846 -25.02212 -23.88627
-22.59995 -21.78253 -20.47870 -19.66870 -19.38093 -18.92742 -18.75701 -17.85979
-17.58685 -17.15888 -16.73776 -16.27966 -15.82665 -15.65644 -15.53299 -15.17895
-15.05174 -14.99541 -14.92648 -14.85535 -14.80867 -14.54304 -14.08897 -13.87017
-13.60949 -13.49692 -13.38948 -13.11690 -12.98108 -12.96869 -12.60566 -12.48535
-12.03683 -12.01052 -11.58132 -11.31706 -10.95164 -10.87606 -10.76071 -9.99309
-9.37845 -8.31831 -6.34963 0.28203 0.49839 0.78908 1.28195 1.38932
1.47119 1.61870 1.99346 2.26688 2.30901 2.50228 2.80196 3.04245
3.21289 3.46933 3.62808 3.87568 4.06473 4.13965 4.23435 4.35703
4.37425 4.47064 4.58472 4.60489 4.64612 4.76907 4.82801 4.93297
4.96187 5.11643 5.28993 5.34396 5.51435 5.64653 5.74095 5.98535
6.23885 6.65564 6.71734 7.23573 7.37196 8.83712
Molecular weight = 319.12amu
Principal moments of inertia in cm(-1)
A = 0.015909 B = 0.004578 C = 0.003850
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1759.565444 B = 6114.507865 C = 7271.345395
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.110 3.890
3 N -0.326 5.326
4 C 0.130 3.870
5 C -0.265 4.265
6 C 0.573 3.427
7 O -0.587 6.587
8 N -0.586 5.586
9 C 0.075 3.925
10 C 0.233 3.767
11 H 0.029 0.971
12 C -0.155 4.155
13 C -0.519 4.519
14 H 0.053 0.947
15 C 0.027 3.973
16 N -0.937 5.937
17 Si 0.933 3.067
18 H -0.253 1.253
19 H -0.297 1.297
20 H -0.266 1.266
21 C 0.012 3.988
22 C 0.554 3.446
23 F -0.172 7.172
24 F -0.166 7.166
25 F -0.167 7.167
26 N -0.249 5.249
27 H 0.051 0.949
28 H 0.107 0.893
29 H 0.059 0.941
30 H 0.108 0.892
31 H 0.148 0.852
32 H 0.236 0.764
33 H 0.066 0.934
34 H 0.092 0.908
35 H 0.078 0.922
36 H 0.042 0.958
37 H 0.052 0.948
38 H 0.076 0.924
39 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.920 -12.109 -8.704 23.314
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.008 4.008
3 N -0.107 5.107
4 C -0.021 4.021
5 C -0.281 4.281
6 C 0.362 3.638
7 O -0.468 6.468
8 N -0.315 5.315
9 C -0.067 4.067
10 C 0.129 3.871
11 H 0.047 0.953
12 C -0.212 4.212
13 C -0.558 4.558
14 H 0.072 0.928
15 C -0.172 4.172
16 N -0.577 5.577
17 Si 0.761 3.239
18 H -0.179 1.179
19 H -0.225 1.225
20 H -0.191 1.191
21 C -0.155 4.155
22 C 0.498 3.502
23 F -0.153 7.153
24 F -0.147 7.147
25 F -0.148 7.148
26 N -0.073 5.073
27 H 0.070 0.930
28 H 0.126 0.874
29 H 0.078 0.922
30 H 0.126 0.874
31 H 0.165 0.835
32 H 0.252 0.748
33 H 0.085 0.915
34 H 0.110 0.890
35 H 0.096 0.904
36 H 0.060 0.940
37 H 0.071 0.929
38 H 0.094 0.906
39 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -18.327 -12.380 -9.716 24.156
hybrid contribution 1.169 1.698 0.531 2.129
sum -17.157 -10.681 -9.186 22.200
Atomic orbital electron populations
1.22078 0.92670 1.04782 1.02706 1.22615 0.97060 0.73420 1.07659
1.49125 1.32236 1.11184 1.18162 1.23822 0.91321 0.91629 0.95311
1.19958 1.10086 0.96783 1.01233 1.17663 0.80947 0.83025 0.82214
1.90740 1.46008 1.43297 1.66782 1.47708 1.48890 1.30255 1.04672
1.22102 0.96208 0.91166 0.97225 1.18989 0.89710 0.87206 0.91157
0.95266 1.22325 0.99143 0.99682 1.00094 1.21324 1.13811 0.94571
1.26091 0.92834 1.25537 0.94522 1.02515 0.94612 1.69979 1.19707
1.37409 1.30592 0.86097 0.76669 0.81471 0.79669 1.17852 1.22505
1.19063 1.21875 1.01862 0.94377 0.97404 1.16909 0.73925 0.82760
0.76650 1.93219 1.62394 1.96668 1.63019 1.93213 1.40672 1.96527
1.84314 1.93266 1.94956 1.58506 1.68106 1.76994 1.21385 0.95683
1.13277 0.92968 0.87405 0.92151 0.87406 0.83456 0.74792 0.91538
0.89011 0.90377 0.93968 0.92925 0.90559 0.92339
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.16 10.09 71.98 0.73 -0.43 16
2 C 0.11 0.77 7.21 86.38 0.62 1.39 16
3 N -0.33 -5.83 3.65 -346.30 -1.26 -7.10 16
4 C 0.13 2.63 9.09 84.28 0.77 3.40 16
5 C -0.27 -8.35 5.30 -20.15 -0.11 -8.46 16
6 C 0.57 23.66 6.78 86.66 0.59 24.25 16
7 O -0.59 -29.71 14.83 -4.04 -0.06 -29.77 16
8 N -0.59 -23.31 2.75 -830.67 -2.29 -25.60 16
9 C 0.07 2.07 8.35 127.77 1.07 3.14 16
10 C 0.23 11.12 2.22 44.25 0.10 11.22 16
11 H 0.03 1.62 5.96 -2.39 -0.01 1.60 16
12 C -0.15 -6.35 8.65 71.98 0.62 -5.73 16
13 C -0.52 -28.37 8.95 25.60 0.23 -28.14 16
14 H 0.05 3.12 7.89 -2.91 -0.02 3.10 16
15 C 0.03 1.53 5.45 84.65 0.46 1.99 16
16 N -0.94 -56.43 13.96 21.45 0.30 -56.13 16
17 Si 0.93 44.98 24.37 68.60 1.67 46.66 16
18 H -0.25 -11.15 6.87 99.48 0.68 -10.47 16
19 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16
20 H -0.27 -12.88 6.53 99.48 0.65 -12.23 16
21 C 0.01 0.37 6.60 43.51 0.29 0.65 16
22 C 0.55 18.70 3.32 71.24 0.24 18.94 16
23 F -0.17 -6.08 17.30 44.97 0.78 -5.30 16
24 F -0.17 -4.99 17.25 44.97 0.78 -4.21 16
25 F -0.17 -6.37 14.96 44.97 0.67 -5.69 16
26 N -0.25 -6.50 12.27 -46.68 -0.57 -7.08 16
27 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16
28 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16
29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16
30 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16
31 H 0.15 -0.05 8.06 -2.38 -0.02 -0.07 16
32 H 0.24 2.90 6.56 -2.91 -0.02 2.88 16
33 H 0.07 1.68 7.67 -2.39 -0.02 1.66 16
34 H 0.09 1.86 5.50 -2.39 -0.01 1.85 16
35 H 0.08 2.14 6.43 -2.39 -0.02 2.13 16
36 H 0.04 1.80 3.28 -2.39 -0.01 1.79 16
37 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16
38 H 0.08 2.79 6.66 -2.39 -0.02 2.78 16
39 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16
Total: -1.00 -79.14 330.89 6.64 -72.51
By element:
Atomic # 1 Polarization: -1.51 SS G_CDS: 1.03 Total: -0.48 kcal
Atomic # 6 Polarization: 16.61 SS G_CDS: 5.60 Total: 22.20 kcal
Atomic # 7 Polarization: -92.08 SS G_CDS: -3.82 Total: -95.90 kcal
Atomic # 8 Polarization: -29.71 SS G_CDS: -0.06 Total: -29.77 kcal
Atomic # 9 Polarization: -17.43 SS G_CDS: 2.23 Total: -15.21 kcal
Atomic # 14 Polarization: 44.98 SS G_CDS: 1.67 Total: 46.66 kcal
Total: -79.14 6.64 -72.51 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001548530011.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.658 kcal
(2) G-P(sol) polarization free energy of solvation -79.145 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.803 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.640 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.505 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.164 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds