Wall clock time and date at job start Tue Mar 31 2020 14:35:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.34675 * 125.47292 * 2 1
4 4 C 1.37714 * 108.45392 * 179.97438 * 3 2 1
5 5 C 1.48335 * 126.37735 * 179.97438 * 4 3 2
6 6 N 1.30821 * 126.41691 * 0.02991 * 5 4 3
7 7 O 1.21295 * 110.08451 * 179.97438 * 6 5 4
8 8 C 1.33665 * 110.03535 * 359.97438 * 7 6 5
9 9 C 1.50697 * 126.42952 * 180.02562 * 8 7 6
10 10 C 1.53007 * 109.46975 * 269.97734 * 9 8 7
11 11 C 1.53004 * 109.46852 * 180.02562 * 10 9 8
12 12 C 1.52999 * 109.47119 * 180.02562 * 11 10 9
13 13 C 1.50697 * 109.47623 * 179.97438 * 12 11 10
14 14 H 1.08003 * 119.99435 * 359.97438 * 13 12 11
15 15 C 1.37875 * 120.00165 * 179.97438 * 13 12 11
16 16 N 1.31509 * 120.00318 * 0.02562 * 15 13 12
17 17 Si 1.86803 * 119.99821 * 180.02562 * 15 13 12
18 18 H 1.48506 * 109.47277 * 60.00089 * 17 15 13
19 19 H 1.48499 * 109.47153 * 180.02562 * 17 15 13
20 20 H 1.48500 * 109.47124 * 300.00258 * 17 15 13
21 21 N 1.30980 * 107.13741 * 359.73253 * 8 7 6
22 22 C 1.40859 * 107.24617 * 359.76827 * 4 3 2
23 23 C 1.36664 * 107.08191 * 0.37783 * 22 4 3
24 24 C 1.46566 * 125.91598 * 179.88762 * 23 22 4
25 25 O 1.21610 * 120.00219 * 359.40752 * 24 23 22
26 26 O 1.34879 * 119.99773 * 179.69001 * 24 23 22
27 27 H 1.08995 * 109.47562 * 270.00229 * 1 2 3
28 28 H 1.09003 * 109.47136 * 30.00281 * 1 2 3
29 29 H 1.08999 * 109.46888 * 150.00086 * 1 2 3
30 30 H 1.08006 * 125.77769 * 359.97438 * 3 2 1
31 31 H 1.08997 * 109.47432 * 29.98043 * 9 8 7
32 32 H 1.09001 * 109.47297 * 149.98237 * 9 8 7
33 33 H 1.08997 * 109.47465 * 299.99867 * 10 9 8
34 34 H 1.08994 * 109.46989 * 60.00443 * 10 9 8
35 35 H 1.09006 * 109.46989 * 299.99885 * 11 10 9
36 36 H 1.09001 * 109.47403 * 60.00514 * 11 10 9
37 37 H 1.09006 * 109.46629 * 300.00165 * 12 11 10
38 38 H 1.09005 * 109.47294 * 59.99657 * 12 11 10
39 39 H 0.97003 * 120.00001 * 179.97438 * 16 15 13
40 40 H 1.08006 * 126.45721 * 180.27330 * 22 4 3
41 41 H 0.96702 * 116.99860 * 179.97438 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2466 1.0968 0.0000
4 6 3.5634 0.6937 0.0006
5 6 4.7542 1.5782 0.0003
6 7 4.7499 2.8864 -0.0001
7 8 5.8877 3.3066 0.0002
8 6 6.7524 2.2873 0.0014
9 6 8.2559 2.3892 0.0026
10 6 8.7660 2.4226 -1.4395
11 6 10.2926 2.5254 -1.4382
12 6 10.8027 2.5594 -2.8803
13 6 12.3062 2.6612 -2.8791
14 1 12.8441 2.6985 -1.9433
15 6 12.9950 2.7069 -4.0726
16 7 12.3400 2.6621 -5.2120
17 14 14.8588 2.8325 -4.0710
18 1 15.4337 1.6564 -3.3698
19 1 15.3539 2.8656 -5.4707
20 1 15.2706 4.0759 -3.3713
21 7 6.0476 1.1833 0.0076
22 6 3.5690 -0.7149 0.0064
23 6 2.2642 -1.1215 0.0005
24 6 1.7966 -2.5106 0.0012
25 8 2.6007 -3.4229 -0.0035
26 8 0.4744 -2.7770 0.0012
27 1 -0.3634 0.0000 1.0276
28 1 -0.3633 0.8900 -0.5139
29 1 -0.3633 -0.8900 -0.5138
30 1 1.8994 2.1195 -0.0004
31 1 8.5578 3.3021 0.5160
32 1 8.6782 1.5262 0.5174
33 1 8.4642 1.5097 -1.9529
34 1 8.3438 3.2855 -1.9543
35 1 10.5948 3.4381 -0.9247
36 1 10.7145 1.6621 -0.9235
37 1 10.5003 1.6468 -3.3941
38 1 10.3808 3.4228 -3.3947
39 1 12.8246 2.6946 -6.0517
40 1 4.4402 -1.3532 0.0125
41 1 0.2142 -3.7083 0.0013
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001600927136.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:35:24
Heat of formation + Delta-G solvation = 5.432208 kcal
Electronic energy + Delta-G solvation = -24717.938342 eV
Core-core repulsion = 20794.569263 eV
Total energy + Delta-G solvation = -3923.369078 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.136 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-45.40293 -42.04338 -40.03983 -36.61384 -36.16528 -35.55465 -33.72234 -32.98320
-31.89664 -30.23788 -29.23447 -27.42844 -25.75435 -24.90586 -23.66031 -23.08348
-21.84027 -20.53977 -20.17779 -20.12040 -18.53566 -17.97959 -17.91706 -16.94018
-16.52677 -16.18208 -15.96922 -15.36357 -15.08625 -14.87989 -14.48039 -14.33497
-13.96892 -13.71707 -13.16973 -13.06315 -12.94853 -12.77369 -12.64243 -12.12746
-12.11407 -12.02690 -11.73796 -11.65604 -11.25011 -11.01594 -10.95375 -10.60510
-10.57779 -10.54469 -10.20193 -9.66894 -9.29637 -9.17093 -9.02963 -8.64549
-8.31326 -5.96407 -3.98904 0.75124 1.02203 1.68584 2.09236 2.48431
2.53588 2.91212 3.01226 3.36025 3.40458 3.42729 3.58108 3.98630
4.24988 4.33877 4.48849 4.57564 4.66823 4.86697 4.93345 5.13275
5.24765 5.28534 5.33117 5.39353 5.59712 5.64058 5.85909 5.93309
5.94725 6.05807 6.12200 6.17250 6.32819 6.40041 6.50135 6.72635
6.87624 7.14290 7.40011 7.71123 7.85592 8.03800 8.22770 8.45710
9.08353 9.65031 11.14873
Molecular weight = 319.14amu
Principal moments of inertia in cm(-1)
A = 0.020630 B = 0.001916 C = 0.001816
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1356.916046 B =14612.335455 C =15413.733447
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.064 3.936
2 N -0.412 5.412
3 C 0.085 3.915
4 C -0.118 4.118
5 C 0.249 3.751
6 N -0.394 5.394
7 O 0.073 5.927
8 C 0.203 3.797
9 C -0.031 4.031
10 C -0.116 4.116
11 C -0.109 4.109
12 C 0.020 3.980
13 C -0.521 4.521
14 H 0.055 0.945
15 C 0.055 3.945
16 N -0.896 5.896
17 Si 0.892 3.108
18 H -0.277 1.277
19 H -0.288 1.288
20 H -0.277 1.277
21 N -0.480 5.480
22 C -0.043 4.043
23 C -0.053 4.053
24 C 0.557 3.443
25 O -0.500 6.500
26 O -0.521 6.521
27 H 0.082 0.918
28 H 0.090 0.910
29 H 0.104 0.896
30 H 0.185 0.815
31 H 0.101 0.899
32 H 0.110 0.890
33 H 0.067 0.933
34 H 0.065 0.935
35 H 0.052 0.948
36 H 0.052 0.948
37 H 0.016 0.984
38 H 0.016 0.984
39 H 0.261 0.739
40 H 0.164 0.836
41 H 0.416 0.584
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.364 -5.218 13.472 31.831
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 N -0.086 5.086
3 C -0.058 4.058
4 C -0.126 4.126
5 C -0.021 4.021
6 N -0.104 5.104
7 O 0.016 5.984
8 C -0.017 4.017
9 C -0.070 4.070
10 C -0.154 4.154
11 C -0.146 4.146
12 C -0.017 4.017
13 C -0.559 4.559
14 H 0.073 0.927
15 C -0.146 4.146
16 N -0.535 5.535
17 Si 0.720 3.280
18 H -0.202 1.202
19 H -0.214 1.214
20 H -0.203 1.203
21 N -0.213 5.213
22 C -0.069 4.069
23 C -0.161 4.161
24 C 0.401 3.599
25 O -0.387 6.387
26 O -0.334 6.334
27 H 0.101 0.899
28 H 0.109 0.891
29 H 0.122 0.878
30 H 0.202 0.798
31 H 0.120 0.880
32 H 0.128 0.872
33 H 0.086 0.914
34 H 0.084 0.916
35 H 0.071 0.929
36 H 0.071 0.929
37 H 0.034 0.966
38 H 0.034 0.966
39 H 0.070 0.930
40 H 0.182 0.818
41 H 0.276 0.724
Dipole moment (debyes) X Y Z Total
from point charges -29.183 -5.093 13.288 32.468
hybrid contribution 0.926 -0.425 -0.161 1.031
sum -28.257 -5.518 13.127 31.643
Atomic orbital electron populations
1.22406 0.75037 1.05715 1.04483 1.43797 1.07364 1.04950 1.52484
1.22241 0.89198 0.92164 1.02174 1.16647 0.88017 0.91349 1.16615
1.22902 0.91248 0.87665 1.00303 1.74845 0.99715 1.12653 1.23163
1.85260 1.10806 1.36292 1.66045 1.29076 0.98241 0.80710 0.93695
1.20548 0.78983 1.05736 1.01735 1.21738 0.98839 1.02841 0.92017
1.21634 0.90739 1.00681 1.01567 1.19101 0.95564 0.97310 0.89764
1.21227 0.92165 1.50315 0.92223 0.92678 1.25036 0.98384 0.95417
0.95719 1.69955 1.35551 1.50751 0.97257 0.86662 0.85828 0.78621
0.76893 1.20243 1.21361 1.20265 1.72039 1.00855 1.27193 1.21218
1.21112 0.94838 0.93438 0.97553 1.18886 0.90300 0.84071 1.22842
1.19371 0.80059 0.87723 0.72705 1.91001 1.55548 1.45738 1.46433
1.84583 1.25984 1.36390 1.86459 0.89919 0.89109 0.87752 0.79785
0.88043 0.87227 0.91425 0.91648 0.92918 0.92897 0.96556 0.96577
0.92976 0.81799 0.72423
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.23 10.52 59.85 0.63 0.85 16
2 N -0.41 -3.15 3.14 -120.18 -0.38 -3.53 16
3 C 0.08 0.75 11.36 -16.50 -0.19 0.56 16
4 C -0.12 -1.43 6.14 -104.94 -0.64 -2.08 16
5 C 0.25 3.60 8.03 -156.09 -1.25 2.34 16
6 N -0.39 -5.70 12.19 30.98 0.38 -5.32 16
7 O 0.07 1.04 11.29 18.05 0.20 1.24 16
8 C 0.20 2.83 7.75 -12.98 -0.10 2.73 16
9 C -0.03 -0.38 5.84 -27.88 -0.16 -0.54 16
10 C -0.12 -1.82 5.20 -26.73 -0.14 -1.96 16
11 C -0.11 -2.07 5.15 -26.73 -0.14 -2.21 16
12 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16
13 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16
14 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16
15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16
16 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16
17 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16
18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
21 N -0.48 -7.35 11.58 -9.87 -0.11 -7.46 16
22 C -0.04 -0.51 10.55 -39.16 -0.41 -0.92 16
23 C -0.05 -0.53 6.82 -82.43 -0.56 -1.09 16
24 C 0.56 5.18 8.29 34.09 0.28 5.47 16
25 O -0.50 -6.30 17.65 -19.35 -0.34 -6.64 16
26 O -0.52 -2.60 10.79 -40.98 -0.44 -3.05 16
27 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16
28 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16
29 H 0.10 0.34 6.09 -51.93 -0.32 0.03 16
30 H 0.19 1.16 8.06 -52.48 -0.42 0.74 16
31 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16
32 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16
33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
40 H 0.16 2.02 8.06 -52.48 -0.42 1.60 16
41 H 0.42 0.35 9.11 45.56 0.42 0.76 16
LS Contribution 364.76 15.07 5.50 5.50
Total: -1.00 -35.93 364.76 -7.23 -43.16
By element:
Atomic # 1 Polarization: 0.28 SS G_CDS: -4.52 Total: -4.24 kcal
Atomic # 6 Polarization: -6.71 SS G_CDS: -3.24 Total: -9.95 kcal
Atomic # 7 Polarization: -43.30 SS G_CDS: 0.62 Total: -42.67 kcal
Atomic # 8 Polarization: -7.87 SS G_CDS: -0.58 Total: -8.45 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -35.93 -7.23 -43.16 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001600927136.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.593 kcal
(2) G-P(sol) polarization free energy of solvation -35.926 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.667 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.432 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds