Wall clock time and date at job start Tue Mar 31 2020 14:35:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.34675 * 125.47292 * 2 1
4 4 C 1.37714 * 108.45392 * 179.97438 * 3 2 1
5 5 C 1.48335 * 126.37735 * 179.97438 * 4 3 2
6 6 N 1.30821 * 126.41691 * 0.02991 * 5 4 3
7 7 O 1.21295 * 110.08451 * 179.97438 * 6 5 4
8 8 C 1.33665 * 110.03535 * 359.97438 * 7 6 5
9 9 C 1.50697 * 126.42952 * 180.02562 * 8 7 6
10 10 C 1.53007 * 109.46975 * 269.97734 * 9 8 7
11 11 C 1.53004 * 109.46852 * 180.02562 * 10 9 8
12 12 C 1.52999 * 109.47119 * 180.02562 * 11 10 9
13 13 C 1.50697 * 109.47623 * 179.97438 * 12 11 10
14 14 H 1.08003 * 119.99435 * 359.97438 * 13 12 11
15 15 C 1.37875 * 120.00165 * 179.97438 * 13 12 11
16 16 N 1.31509 * 120.00318 * 0.02562 * 15 13 12
17 17 Si 1.86803 * 119.99821 * 180.02562 * 15 13 12
18 18 H 1.48506 * 109.47277 * 60.00089 * 17 15 13
19 19 H 1.48499 * 109.47153 * 180.02562 * 17 15 13
20 20 H 1.48500 * 109.47124 * 300.00258 * 17 15 13
21 21 N 1.30980 * 107.13741 * 359.73253 * 8 7 6
22 22 C 1.40859 * 107.24617 * 359.76827 * 4 3 2
23 23 C 1.36664 * 107.08191 * 0.37783 * 22 4 3
24 24 C 1.46566 * 125.91598 * 179.88762 * 23 22 4
25 25 O 1.21610 * 120.00219 * 359.40752 * 24 23 22
26 26 O 1.34879 * 119.99773 * 179.69001 * 24 23 22
27 27 H 1.08995 * 109.47562 * 270.00229 * 1 2 3
28 28 H 1.09003 * 109.47136 * 30.00281 * 1 2 3
29 29 H 1.08999 * 109.46888 * 150.00086 * 1 2 3
30 30 H 1.08006 * 125.77769 * 359.97438 * 3 2 1
31 31 H 1.08997 * 109.47432 * 29.98043 * 9 8 7
32 32 H 1.09001 * 109.47297 * 149.98237 * 9 8 7
33 33 H 1.08997 * 109.47465 * 299.99867 * 10 9 8
34 34 H 1.08994 * 109.46989 * 60.00443 * 10 9 8
35 35 H 1.09006 * 109.46989 * 299.99885 * 11 10 9
36 36 H 1.09001 * 109.47403 * 60.00514 * 11 10 9
37 37 H 1.09006 * 109.46629 * 300.00165 * 12 11 10
38 38 H 1.09005 * 109.47294 * 59.99657 * 12 11 10
39 39 H 0.97003 * 120.00001 * 179.97438 * 16 15 13
40 40 H 1.08006 * 126.45721 * 180.27330 * 22 4 3
41 41 H 0.96702 * 116.99860 * 179.97438 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2466 1.0968 0.0000
4 6 3.5634 0.6937 0.0006
5 6 4.7542 1.5782 0.0003
6 7 4.7499 2.8864 -0.0001
7 8 5.8877 3.3066 0.0002
8 6 6.7524 2.2873 0.0014
9 6 8.2559 2.3892 0.0026
10 6 8.7660 2.4226 -1.4395
11 6 10.2926 2.5254 -1.4382
12 6 10.8027 2.5594 -2.8803
13 6 12.3062 2.6612 -2.8791
14 1 12.8441 2.6985 -1.9433
15 6 12.9950 2.7069 -4.0726
16 7 12.3400 2.6621 -5.2120
17 14 14.8588 2.8325 -4.0710
18 1 15.4337 1.6564 -3.3698
19 1 15.3539 2.8656 -5.4707
20 1 15.2706 4.0759 -3.3713
21 7 6.0476 1.1833 0.0076
22 6 3.5690 -0.7149 0.0064
23 6 2.2642 -1.1215 0.0005
24 6 1.7966 -2.5106 0.0012
25 8 2.6007 -3.4229 -0.0035
26 8 0.4744 -2.7770 0.0012
27 1 -0.3634 0.0000 1.0276
28 1 -0.3633 0.8900 -0.5139
29 1 -0.3633 -0.8900 -0.5138
30 1 1.8994 2.1195 -0.0004
31 1 8.5578 3.3021 0.5160
32 1 8.6782 1.5262 0.5174
33 1 8.4642 1.5097 -1.9529
34 1 8.3438 3.2855 -1.9543
35 1 10.5948 3.4381 -0.9247
36 1 10.7145 1.6621 -0.9235
37 1 10.5003 1.6468 -3.3941
38 1 10.3808 3.4228 -3.3947
39 1 12.8246 2.6946 -6.0517
40 1 4.4402 -1.3532 0.0125
41 1 0.2142 -3.7083 0.0013
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001600927136.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:35:23
Heat of formation + Delta-G solvation = -19.080671 kcal
Electronic energy + Delta-G solvation = -24719.001300 eV
Core-core repulsion = 20794.569263 eV
Total energy + Delta-G solvation = -3924.432037 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.136 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-46.47716 -42.75001 -40.73130 -37.41331 -37.24595 -36.75911 -35.20230 -34.13474
-33.24748 -31.25285 -30.59418 -27.97486 -27.45082 -25.81706 -24.60193 -24.42692
-23.06946 -21.77127 -21.37726 -20.86486 -19.29194 -19.03861 -18.67133 -18.35157
-17.92049 -17.17480 -16.64067 -16.50989 -16.34044 -15.94213 -15.81791 -15.20171
-14.80914 -14.61083 -14.49107 -14.16678 -13.82963 -13.70344 -13.65672 -13.53217
-13.32246 -13.07143 -12.84515 -12.77027 -12.61451 -12.39571 -12.21364 -12.12520
-12.03947 -12.01565 -11.47604 -11.32613 -11.22664 -10.90430 -10.50282 -9.92695
-9.46229 -8.15634 -6.26482 -0.00987 0.02992 0.70275 1.43168 1.46416
1.48075 1.54011 1.74040 1.84622 1.90746 2.09148 2.44706 2.64996
3.00405 3.17665 3.65678 3.79582 3.95117 4.06636 4.09133 4.14040
4.28915 4.40889 4.45528 4.62368 4.66569 4.75701 4.82956 4.86508
4.88204 4.93878 5.00050 5.20780 5.27194 5.35473 5.36635 5.42228
5.60448 5.61252 5.83980 5.90629 5.93146 6.30011 6.84601 6.92234
7.15413 7.42827 8.96086
Molecular weight = 319.14amu
Principal moments of inertia in cm(-1)
A = 0.020630 B = 0.001916 C = 0.001816
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1356.916046 B =14612.335455 C =15413.733447
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.054 3.946
2 N -0.399 5.399
3 C 0.107 3.893
4 C -0.155 4.155
5 C 0.245 3.755
6 N -0.402 5.402
7 O 0.069 5.931
8 C 0.205 3.795
9 C -0.020 4.020
10 C -0.106 4.106
11 C -0.095 4.095
12 C 0.018 3.982
13 C -0.540 4.540
14 H 0.066 0.934
15 C -0.006 4.006
16 N -0.937 5.937
17 Si 0.965 3.035
18 H -0.267 1.267
19 H -0.287 1.287
20 H -0.264 1.264
21 N -0.507 5.507
22 C -0.067 4.067
23 C -0.059 4.059
24 C 0.567 3.433
25 O -0.541 6.541
26 O -0.500 6.500
27 H 0.100 0.900
28 H 0.117 0.883
29 H 0.108 0.892
30 H 0.214 0.786
31 H 0.133 0.867
32 H 0.124 0.876
33 H 0.050 0.950
34 H 0.061 0.939
35 H 0.068 0.932
36 H 0.061 0.939
37 H -0.015 1.015
38 H -0.010 1.010
39 H 0.262 0.738
40 H 0.145 0.855
41 H 0.437 0.563
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.623 -4.621 14.996 33.522
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 N -0.071 5.071
3 C -0.038 4.038
4 C -0.163 4.163
5 C -0.024 4.024
6 N -0.114 5.114
7 O 0.013 5.987
8 C -0.015 4.015
9 C -0.058 4.058
10 C -0.144 4.144
11 C -0.133 4.133
12 C -0.019 4.019
13 C -0.578 4.578
14 H 0.084 0.916
15 C -0.203 4.203
16 N -0.578 5.578
17 Si 0.790 3.210
18 H -0.191 1.191
19 H -0.213 1.213
20 H -0.189 1.189
21 N -0.240 5.240
22 C -0.094 4.094
23 C -0.168 4.168
24 C 0.412 3.588
25 O -0.432 6.432
26 O -0.315 6.315
27 H 0.118 0.882
28 H 0.135 0.865
29 H 0.127 0.873
30 H 0.230 0.770
31 H 0.151 0.849
32 H 0.142 0.858
33 H 0.069 0.931
34 H 0.080 0.920
35 H 0.087 0.913
36 H 0.080 0.920
37 H 0.004 0.996
38 H 0.009 0.991
39 H 0.070 0.930
40 H 0.163 0.837
41 H 0.300 0.700
Dipole moment (debyes) X Y Z Total
from point charges -30.490 -4.506 14.833 34.205
hybrid contribution 1.151 -0.650 -0.660 1.477
sum -29.340 -5.155 14.173 32.989
Atomic orbital electron populations
1.22802 0.72130 1.07318 1.06134 1.44088 1.08861 1.03760 1.50348
1.22587 0.88039 0.93420 0.99749 1.16838 0.88840 0.91205 1.19423
1.23309 0.91664 0.87970 0.99501 1.74806 0.99807 1.12618 1.24125
1.85231 1.10884 1.36313 1.66249 1.29280 0.98651 0.80455 0.93085
1.20508 0.77886 1.08054 0.99397 1.21508 0.96607 1.01874 0.94460
1.21422 0.92780 1.01857 0.97246 1.19062 0.94841 0.94569 0.93430
1.21748 0.93631 1.49707 0.92741 0.91593 1.26037 1.03931 0.95025
0.95349 1.70107 1.37711 1.51966 0.97974 0.85497 0.79230 0.79277
0.77016 1.19145 1.21257 1.18920 1.72046 1.01744 1.28096 1.22148
1.21040 0.95491 0.93596 0.99232 1.18890 0.90134 0.85201 1.22548
1.19240 0.80886 0.86960 0.71691 1.90989 1.56926 1.46765 1.48492
1.84530 1.23200 1.38384 1.85388 0.88157 0.86460 0.87312 0.76957
0.84929 0.85838 0.93142 0.92002 0.91287 0.92048 0.99635 0.99122
0.92951 0.83707 0.69986
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.19 10.52 127.77 1.34 1.54 16
2 N -0.40 -5.27 3.14 -534.14 -1.67 -6.94 16
3 C 0.11 1.70 11.36 84.13 0.96 2.65 16
4 C -0.16 -3.78 6.14 -20.07 -0.12 -3.91 16
5 C 0.25 7.17 8.03 137.25 1.10 8.27 16
6 N -0.40 -11.51 12.19 -59.03 -0.72 -12.23 16
7 O 0.07 1.92 11.29 74.64 0.84 2.76 16
8 C 0.21 5.65 7.75 88.35 0.68 6.34 16
9 C -0.02 -0.46 5.84 29.85 0.17 -0.29 16
10 C -0.11 -3.30 5.20 30.60 0.16 -3.15 16
11 C -0.10 -3.59 5.15 30.60 0.16 -3.44 16
12 C 0.02 0.95 4.97 29.85 0.15 1.09 16
13 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16
14 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16
15 C -0.01 -0.36 5.46 84.65 0.46 0.10 16
16 N -0.94 -58.02 13.29 21.45 0.28 -57.74 16
17 Si 0.97 44.42 29.54 68.60 2.03 46.45 16
18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
19 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16
20 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16
21 N -0.51 -15.81 11.58 -302.41 -3.50 -19.31 16
22 C -0.07 -1.66 10.55 22.54 0.24 -1.42 16
23 C -0.06 -1.15 6.82 40.02 0.27 -0.88 16
24 C 0.57 10.18 8.29 69.99 0.58 10.76 16
25 O -0.54 -13.94 17.65 19.48 0.34 -13.60 16
26 O -0.50 -3.87 10.79 -57.93 -0.63 -4.50 16
27 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16
28 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16
29 H 0.11 0.35 6.09 -2.39 -0.01 0.33 16
30 H 0.21 2.06 8.06 -2.91 -0.02 2.03 16
31 H 0.13 2.28 8.14 -2.39 -0.02 2.27 16
32 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16
33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16
34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16
35 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16
36 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16
37 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16
38 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16
39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16
40 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16
41 H 0.44 -0.33 9.11 -74.06 -0.67 -1.01 16
Total: -1.00 -80.90 364.76 3.76 -77.13
By element:
Atomic # 1 Polarization: 0.21 SS G_CDS: 0.40 Total: 0.61 kcal
Atomic # 6 Polarization: -19.03 SS G_CDS: 6.39 Total: -12.64 kcal
Atomic # 7 Polarization: -90.60 SS G_CDS: -5.61 Total: -96.22 kcal
Atomic # 8 Polarization: -15.90 SS G_CDS: 0.56 Total: -15.33 kcal
Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal
Total: -80.90 3.76 -77.13 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001600927136.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.050 kcal
(2) G-P(sol) polarization free energy of solvation -80.895 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.845 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.131 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.081 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds