Wall clock time and date at job start Tue Mar 31 2020 13:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46777 * 2 1 4 4 C 1.50697 * 109.46902 * 240.00261 * 2 1 3 5 5 H 1.08004 * 120.00428 * 239.99471 * 4 2 1 6 6 C 1.37878 * 120.00088 * 60.00010 * 4 2 1 7 7 N 1.31516 * 119.99991 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00187 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47082 * 59.99548 * 8 6 4 10 10 H 1.48499 * 109.47422 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46987 * 300.00044 * 8 6 4 12 12 N 1.46492 * 109.47362 * 120.00070 * 2 1 3 13 13 C 1.46509 * 119.99847 * 60.00198 * 12 2 1 14 14 C 1.34783 * 120.00374 * 240.27654 * 12 2 1 15 15 O 1.21566 * 119.99606 * 5.10327 * 14 12 2 16 16 C 1.47706 * 119.99987 * 185.10661 * 14 12 2 17 17 C 1.41507 * 126.51522 * 185.97588 * 16 14 12 18 18 C 1.35369 * 105.49969 * 179.90274 * 17 16 14 19 19 N 1.35028 * 107.23044 * 0.35453 * 18 17 16 20 20 C 1.46504 * 124.88559 * 179.76223 * 19 18 17 21 21 C 1.52998 * 109.47245 * 124.97816 * 20 19 18 22 22 C 1.52999 * 109.47375 * 180.02562 * 21 20 19 23 23 F 1.39898 * 109.46944 * 59.99899 * 22 21 20 24 24 F 1.39891 * 109.47312 * 179.97438 * 22 21 20 25 25 F 1.39903 * 109.47174 * 300.00401 * 22 21 20 26 26 N 1.28474 * 110.23252 * 359.76713 * 19 18 17 27 27 H 1.08995 * 109.46978 * 59.99421 * 1 2 3 28 28 H 1.08993 * 109.46805 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46872 * 299.99540 * 1 2 3 30 30 H 0.96998 * 119.99993 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46906 * 95.36586 * 13 12 2 32 32 H 1.09003 * 109.46567 * 215.36145 * 13 12 2 33 33 H 1.08998 * 109.46786 * 335.36222 * 13 12 2 34 34 H 1.07991 * 127.24712 * 0.02562 * 17 16 14 35 35 H 1.08006 * 126.38070 * 180.08965 * 18 17 16 36 36 H 1.09004 * 109.47159 * 244.98155 * 20 19 18 37 37 H 1.09000 * 109.46685 * 4.97913 * 20 19 18 38 38 H 1.08992 * 109.47190 * 300.00649 * 21 20 19 39 39 H 1.09008 * 109.46769 * 59.99926 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.8280 -2.5196 -4.0083 10 1 1.8278 -0.4190 -5.2205 11 1 3.8074 -1.1188 -4.0078 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7887 -0.0340 2.0861 15 8 3.0017 1.1545 1.9453 16 6 3.3740 -0.7586 3.2325 17 6 4.0994 -0.1902 4.3063 18 6 4.4310 -1.2288 5.1087 19 7 3.9374 -2.3486 4.5381 20 6 4.0799 -3.7003 5.0848 21 6 2.6972 -4.3376 5.2361 22 6 2.8459 -5.7491 5.8076 23 9 3.4681 -5.6823 7.0588 24 9 1.5816 -6.3315 5.9465 25 9 3.6241 -6.5237 4.9406 26 7 3.3249 -2.0582 3.4467 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7087 1.1614 -3.4843 31 1 2.4626 -2.7356 1.0556 32 1 1.5306 -2.2623 2.4963 33 1 0.7371 -2.3252 0.9042 34 1 4.3365 0.8528 4.4554 35 1 4.9903 -1.1726 6.0310 36 1 4.6861 -4.3036 4.4089 37 1 4.5648 -3.6487 6.0596 38 1 2.0911 -3.7344 5.9119 39 1 2.2123 -4.3892 4.2612 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650531957.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:49 Heat of formation + Delta-G solvation = -99.419884 kcal Electronic energy + Delta-G solvation = -27029.182715 eV Core-core repulsion = 22559.410169 eV Total energy + Delta-G solvation = -4469.772547 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.57864 -48.07265 -48.04554 -42.61826 -38.70828 -35.44943 -35.19885 -32.85429 -31.25931 -30.71165 -29.21356 -26.57878 -25.98123 -25.16261 -23.71649 -22.41749 -21.39424 -20.45062 -19.04366 -18.96806 -18.59183 -17.96278 -16.99056 -16.48929 -16.10801 -15.95056 -15.37291 -15.15228 -14.91268 -14.53494 -14.44965 -14.24705 -14.19461 -14.17978 -14.10301 -13.55807 -13.33228 -13.00676 -12.75905 -12.53951 -12.36017 -12.21264 -12.05652 -11.62787 -11.46260 -11.03225 -10.79934 -10.69226 -10.40446 -10.22384 -10.10991 -9.21912 -9.18297 -9.06569 -9.00524 -8.39088 -7.51195 -6.03160 -4.10892 1.75503 1.98916 2.30384 2.49825 3.31380 3.35448 3.36000 3.38161 3.39407 3.54101 3.96436 4.04943 4.05917 4.21292 4.43751 4.53240 4.72166 4.77036 5.01278 5.12026 5.27806 5.40591 5.75141 5.86363 6.04397 6.25614 6.44600 6.54035 6.70914 6.83578 6.90513 7.10674 7.49363 7.56323 7.75976 7.94859 8.08067 8.23398 8.57916 8.86988 9.08410 9.55365 11.02173 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.003249 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.833378 B = 8616.317861 C = 9577.049573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.577 5.577 13 C 0.095 3.905 14 C 0.584 3.416 15 O -0.546 6.546 16 C 0.009 3.991 17 C -0.179 4.179 18 C -0.022 4.022 19 N -0.298 5.298 20 C 0.127 3.873 21 C -0.185 4.185 22 C 0.461 3.539 23 F -0.184 7.184 24 F -0.178 7.178 25 F -0.179 7.179 26 N -0.259 5.259 27 H 0.094 0.906 28 H 0.030 0.970 29 H 0.012 0.988 30 H 0.264 0.736 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.162 0.838 35 H 0.179 0.821 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.562 -12.553 20.038 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.307 5.307 13 C -0.049 4.049 14 C 0.368 3.632 15 O -0.423 6.423 16 C -0.153 4.153 17 C -0.207 4.207 18 C -0.163 4.163 19 N -0.086 5.086 20 C 0.005 3.995 21 C -0.224 4.224 22 C 0.406 3.594 23 F -0.165 7.165 24 F -0.159 7.159 25 F -0.161 7.161 26 N -0.094 5.094 27 H 0.113 0.887 28 H 0.049 0.951 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.179 0.821 35 H 0.196 0.804 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.182 -12.951 19.389 23.689 hybrid contribution 0.685 -0.178 -0.361 0.795 sum 4.867 -13.130 19.028 23.625 Atomic orbital electron populations 1.22095 0.98101 0.99415 1.00914 1.18998 0.91027 0.94503 0.79670 0.91791 1.21293 1.31817 1.13004 0.90210 0.92273 1.24883 0.94962 0.94989 0.98903 1.69872 1.36361 1.22619 1.23835 0.86547 0.79241 0.79576 0.81963 1.20238 1.21180 1.20268 1.48129 1.47865 1.12058 1.22613 1.21652 1.00570 0.82468 1.00176 1.16979 0.79452 0.85925 0.80808 1.90740 1.61974 1.14380 1.75240 1.22452 1.04241 0.89442 0.99127 1.21824 1.03551 1.00420 0.94944 1.22805 1.05729 0.85676 1.02132 1.45374 1.39815 1.06943 1.16471 1.21723 0.96306 0.80073 1.01383 1.23190 1.00938 0.91068 1.07193 1.20251 0.73953 0.89155 0.76019 1.93201 1.83013 1.96708 1.43599 1.93224 1.40597 1.86364 1.95738 1.93227 1.75365 1.77970 1.69512 1.73844 1.15733 1.17149 1.02631 0.88729 0.95073 0.96878 0.92644 0.93382 0.91934 0.91329 0.82066 0.80353 0.87679 0.86863 0.86296 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.96 37.16 0.33 -3.25 16 2 C 0.26 6.78 2.62 -69.09 -0.18 6.60 16 3 H 0.06 1.93 6.91 -51.93 -0.36 1.57 16 4 C -0.52 -14.50 8.37 -34.44 -0.29 -14.79 16 5 H 0.06 1.62 7.65 -52.48 -0.40 1.22 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.58 -13.09 2.75 -176.42 -0.49 -13.58 16 13 C 0.10 1.77 8.52 59.85 0.51 2.28 16 14 C 0.58 13.09 7.67 -12.39 -0.10 12.99 16 15 O -0.55 -14.02 16.27 5.31 0.09 -13.93 16 16 C 0.01 0.16 6.75 -82.77 -0.56 -0.40 16 17 C -0.18 -2.55 10.81 -39.36 -0.43 -2.97 16 18 C -0.02 -0.22 11.40 -17.17 -0.20 -0.42 16 19 N -0.30 -3.20 3.41 -61.33 -0.21 -3.41 16 20 C 0.13 0.81 6.15 -4.04 -0.02 0.79 16 21 C -0.19 -1.14 5.36 -26.73 -0.14 -1.28 16 22 C 0.46 3.12 3.16 37.16 0.12 3.23 16 23 F -0.18 -1.25 16.80 2.25 0.04 -1.21 16 24 F -0.18 -1.47 17.32 2.25 0.04 -1.43 16 25 F -0.18 -1.42 16.80 2.25 0.04 -1.38 16 26 N -0.26 -3.82 8.45 33.42 0.28 -3.54 16 27 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 28 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.01 5.94 -51.93 -0.31 0.70 16 33 H 0.07 1.27 6.44 -51.93 -0.33 0.93 16 34 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 35 H 0.18 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.11 0.65 7.80 -51.93 -0.41 0.24 16 37 H 0.11 0.40 7.70 -51.93 -0.40 0.00 16 38 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.13 0.93 8.08 -51.92 -0.42 0.51 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -33.36 341.16 -5.05 -38.41 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.54 Total: -1.12 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.05 Total: 4.48 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.22 Total: -45.28 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.09 Total: -13.93 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.11 Total: -4.01 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.36 -5.05 -38.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650531957.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.012 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds