Wall clock time and date at job start Tue Mar 31 2020 13:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46777 * 2 1 4 4 C 1.50697 * 109.46902 * 240.00261 * 2 1 3 5 5 H 1.08004 * 120.00428 * 239.99471 * 4 2 1 6 6 C 1.37878 * 120.00088 * 60.00010 * 4 2 1 7 7 N 1.31516 * 119.99991 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00187 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47082 * 59.99548 * 8 6 4 10 10 H 1.48499 * 109.47422 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46987 * 300.00044 * 8 6 4 12 12 N 1.46492 * 109.47362 * 120.00070 * 2 1 3 13 13 C 1.46509 * 119.99847 * 60.00198 * 12 2 1 14 14 C 1.34783 * 120.00374 * 240.27654 * 12 2 1 15 15 O 1.21566 * 119.99606 * 5.10327 * 14 12 2 16 16 C 1.47706 * 119.99987 * 185.10661 * 14 12 2 17 17 C 1.41507 * 126.51522 * 185.97588 * 16 14 12 18 18 C 1.35369 * 105.49969 * 179.90274 * 17 16 14 19 19 N 1.35028 * 107.23044 * 0.35453 * 18 17 16 20 20 C 1.46504 * 124.88559 * 179.76223 * 19 18 17 21 21 C 1.52998 * 109.47245 * 124.97816 * 20 19 18 22 22 C 1.52999 * 109.47375 * 180.02562 * 21 20 19 23 23 F 1.39898 * 109.46944 * 59.99899 * 22 21 20 24 24 F 1.39891 * 109.47312 * 179.97438 * 22 21 20 25 25 F 1.39903 * 109.47174 * 300.00401 * 22 21 20 26 26 N 1.28474 * 110.23252 * 359.76713 * 19 18 17 27 27 H 1.08995 * 109.46978 * 59.99421 * 1 2 3 28 28 H 1.08993 * 109.46805 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46872 * 299.99540 * 1 2 3 30 30 H 0.96998 * 119.99993 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46906 * 95.36586 * 13 12 2 32 32 H 1.09003 * 109.46567 * 215.36145 * 13 12 2 33 33 H 1.08998 * 109.46786 * 335.36222 * 13 12 2 34 34 H 1.07991 * 127.24712 * 0.02562 * 17 16 14 35 35 H 1.08006 * 126.38070 * 180.08965 * 18 17 16 36 36 H 1.09004 * 109.47159 * 244.98155 * 20 19 18 37 37 H 1.09000 * 109.46685 * 4.97913 * 20 19 18 38 38 H 1.08992 * 109.47190 * 300.00649 * 21 20 19 39 39 H 1.09008 * 109.46769 * 59.99926 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.8280 -2.5196 -4.0083 10 1 1.8278 -0.4190 -5.2205 11 1 3.8074 -1.1188 -4.0078 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7887 -0.0340 2.0861 15 8 3.0017 1.1545 1.9453 16 6 3.3740 -0.7586 3.2325 17 6 4.0994 -0.1902 4.3063 18 6 4.4310 -1.2288 5.1087 19 7 3.9374 -2.3486 4.5381 20 6 4.0799 -3.7003 5.0848 21 6 2.6972 -4.3376 5.2361 22 6 2.8459 -5.7491 5.8076 23 9 3.4681 -5.6823 7.0588 24 9 1.5816 -6.3315 5.9465 25 9 3.6241 -6.5237 4.9406 26 7 3.3249 -2.0582 3.4467 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7087 1.1614 -3.4843 31 1 2.4626 -2.7356 1.0556 32 1 1.5306 -2.2623 2.4963 33 1 0.7371 -2.3252 0.9042 34 1 4.3365 0.8528 4.4554 35 1 4.9903 -1.1726 6.0310 36 1 4.6861 -4.3036 4.4089 37 1 4.5648 -3.6487 6.0596 38 1 2.0911 -3.7344 5.9119 39 1 2.2123 -4.3892 4.2612 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650531957.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:48 Heat of formation + Delta-G solvation = -120.587414 kcal Electronic energy + Delta-G solvation = -27030.100608 eV Core-core repulsion = 22559.410169 eV Total energy + Delta-G solvation = -4470.690440 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.12788 -48.63221 -48.59898 -43.63770 -40.44468 -37.17697 -36.06703 -34.80967 -32.39277 -31.73415 -30.94317 -27.75775 -27.37739 -27.17983 -24.82355 -23.33134 -22.42615 -21.91455 -20.11642 -19.56656 -19.53783 -18.59719 -18.52350 -17.97908 -17.57666 -17.04624 -16.94129 -16.19774 -16.00839 -15.66649 -15.46426 -15.07431 -14.98823 -14.84720 -14.75741 -14.72252 -14.45371 -14.41326 -14.15049 -13.88789 -13.55540 -13.47048 -13.04925 -12.95967 -12.90404 -12.71312 -12.68804 -12.58719 -12.19417 -12.12709 -11.62985 -11.20052 -10.94056 -10.52091 -10.20051 -10.04623 -9.33348 -8.14517 -6.31475 0.59077 1.22288 1.29273 1.41669 1.44200 1.51943 1.86453 2.30317 2.47050 2.50246 2.83315 2.86253 3.03738 3.12923 3.38389 3.67769 3.77740 4.01500 4.08837 4.19265 4.49302 4.52575 4.68313 4.73365 4.77059 4.81101 4.83634 4.88675 5.03453 5.06224 5.34747 5.45390 5.63344 5.66590 5.89177 6.03666 6.14897 6.73363 6.74549 6.92929 7.28378 7.44548 8.89974 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.003249 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.833378 B = 8616.317861 C = 9577.049573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.012 0.988 4 C -0.541 4.541 5 H 0.057 0.943 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.966 3.034 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.278 1.278 12 N -0.587 5.587 13 C 0.102 3.898 14 C 0.574 3.426 15 O -0.596 6.596 16 C -0.032 4.032 17 C -0.206 4.206 18 C 0.016 3.984 19 N -0.282 5.282 20 C 0.117 3.883 21 C -0.180 4.180 22 C 0.468 3.532 23 F -0.181 7.181 24 F -0.188 7.188 25 F -0.186 7.186 26 N -0.264 5.264 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.020 0.980 30 H 0.266 0.734 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.159 0.841 35 H 0.236 0.764 36 H 0.112 0.888 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.685 -15.129 22.034 27.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.030 0.970 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.791 3.209 9 H -0.187 1.187 10 H -0.206 1.206 11 H -0.203 1.203 12 N -0.316 5.316 13 C -0.040 4.040 14 C 0.362 3.638 15 O -0.477 6.477 16 C -0.191 4.191 17 C -0.234 4.234 18 C -0.127 4.127 19 N -0.070 5.070 20 C -0.002 4.002 21 C -0.218 4.218 22 C 0.413 3.587 23 F -0.162 7.162 24 F -0.169 7.169 25 F -0.168 7.168 26 N -0.101 5.101 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.176 0.824 35 H 0.252 0.748 36 H 0.130 0.870 37 H 0.173 0.827 38 H 0.149 0.851 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.293 -15.574 21.403 26.994 hybrid contribution 0.396 0.549 -0.838 1.077 sum 5.689 -15.025 20.566 26.097 Atomic orbital electron populations 1.21884 0.96900 1.00155 1.00120 1.18624 0.91908 0.92239 0.81249 0.97016 1.21507 1.32170 1.13110 0.91143 0.92481 1.25729 0.94979 0.95628 1.01922 1.70011 1.37108 1.23781 1.24607 0.85493 0.78377 0.78985 0.78059 1.18739 1.20570 1.20337 1.48122 1.48218 1.13475 1.21783 1.21751 1.00343 0.80053 1.01872 1.17669 0.78705 0.85720 0.81728 1.90684 1.63584 1.16697 1.76771 1.21796 1.07289 0.90879 0.99125 1.21989 1.04521 1.01717 0.95147 1.23469 1.03263 0.83649 1.02271 1.45784 1.37533 1.08831 1.14900 1.22206 0.96816 0.77768 1.03399 1.23123 1.00983 0.90748 1.06975 1.20236 0.73420 0.89094 0.75953 1.93209 1.82892 1.96678 1.43431 1.93208 1.41350 1.86578 1.95788 1.93219 1.75508 1.78283 1.69791 1.73690 1.16508 1.15554 1.04372 0.90988 0.93390 0.96106 0.92486 0.93272 0.89359 0.91413 0.82376 0.74777 0.86956 0.82706 0.85071 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.67 8.96 71.98 0.64 -6.02 16 2 C 0.26 14.40 2.62 44.25 0.12 14.52 16 3 H 0.01 0.77 6.91 -2.39 -0.02 0.75 16 4 C -0.54 -30.72 8.37 25.60 0.21 -30.50 16 5 H 0.06 3.18 7.65 -2.91 -0.02 3.16 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.92 -53.86 11.32 21.45 0.24 -53.61 16 8 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 9 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.59 -27.59 2.75 -830.35 -2.29 -29.87 16 13 C 0.10 3.79 8.52 127.77 1.09 4.88 16 14 C 0.57 26.96 7.67 86.74 0.67 27.63 16 15 O -0.60 -32.81 16.27 -3.92 -0.06 -32.87 16 16 C -0.03 -1.13 6.75 42.46 0.29 -0.85 16 17 C -0.21 -5.58 10.81 22.41 0.24 -5.33 16 18 C 0.02 0.25 11.40 83.54 0.95 1.21 16 19 N -0.28 -4.97 3.41 -347.93 -1.19 -6.16 16 20 C 0.12 0.96 6.15 86.38 0.53 1.50 16 21 C -0.18 -1.59 5.36 30.59 0.16 -1.43 16 22 C 0.47 4.95 3.16 71.98 0.23 5.18 16 23 F -0.18 -1.80 16.80 44.97 0.76 -1.05 16 24 F -0.19 -2.70 17.32 44.97 0.78 -1.92 16 25 F -0.19 -2.47 16.80 44.97 0.76 -1.72 16 26 N -0.26 -7.32 8.45 -48.18 -0.41 -7.73 16 27 H 0.07 3.97 6.07 -2.39 -0.01 3.95 16 28 H 0.05 2.20 6.66 -2.39 -0.02 2.18 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.09 2.78 5.94 -2.39 -0.01 2.77 16 33 H 0.07 2.48 6.44 -2.39 -0.02 2.46 16 34 H 0.16 4.24 8.06 -2.92 -0.02 4.21 16 35 H 0.24 1.03 8.06 -2.91 -0.02 1.01 16 36 H 0.11 0.90 7.80 -2.38 -0.02 0.88 16 37 H 0.16 0.09 7.70 -2.39 -0.02 0.07 16 38 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.12 1.40 8.08 -2.38 -0.02 1.38 16 Total: -1.00 -77.85 341.16 7.29 -70.56 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 1.09 Total: 6.12 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 5.58 Total: 12.18 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -3.64 Total: -97.37 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.06 Total: -32.87 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 2.29 Total: -4.69 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -77.85 7.29 -70.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650531957.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.027 kcal (2) G-P(sol) polarization free energy of solvation -77.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds