Wall clock time and date at job start Tue Mar 31 2020 13:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 N 1.46498 * 109.47120 * 240.00144 * 2 1 3 5 5 C 1.36935 * 120.00239 * 84.99640 * 4 2 1 6 6 H 1.08004 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00368 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 359.72375 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72253 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72375 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72186 * 9 7 5 13 13 C 1.52998 * 109.47443 * 120.00087 * 2 1 3 14 14 H 1.09001 * 109.47463 * 185.00072 * 13 2 1 15 15 C 1.52999 * 109.47112 * 64.99513 * 13 2 1 16 16 N 1.46504 * 109.47065 * 304.99901 * 13 2 1 17 17 C 1.34771 * 119.99931 * 205.00047 * 16 13 2 18 18 O 1.21565 * 120.00363 * 359.97438 * 17 16 13 19 19 C 1.47710 * 119.99741 * 179.97438 * 17 16 13 20 20 C 1.39993 * 119.96564 * 359.72391 * 19 17 16 21 21 C 1.36609 * 120.46131 * 179.77522 * 20 19 17 22 22 C 1.38805 * 120.20831 * 0.48613 * 21 20 19 23 23 O 1.35181 * 133.65397 * 179.78168 * 22 21 20 24 24 C 1.34390 * 108.24677 * 179.97438 * 23 22 21 25 25 O 1.35183 * 124.90944 * 179.97438 * 24 23 22 26 26 N 1.30583 * 110.18380 * 359.97438 * 24 23 22 27 27 C 1.36225 * 108.68160 * 359.97438 * 26 24 23 28 28 C 1.39211 * 133.66879 * 180.02562 * 27 26 24 29 29 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46933 * 300.00179 * 1 2 3 31 31 H 1.09004 * 109.47411 * 59.99789 * 1 2 3 32 32 H 0.97004 * 119.99747 * 265.00379 * 4 2 1 33 33 H 0.97000 * 120.00481 * 0.27542 * 8 7 5 34 34 H 1.08997 * 109.47031 * 60.00462 * 15 13 2 35 35 H 1.09004 * 109.47231 * 179.97438 * 15 13 2 36 36 H 1.09001 * 109.47413 * 300.00590 * 15 13 2 37 37 H 0.97001 * 119.99721 * 25.00195 * 16 13 2 38 38 H 1.08002 * 119.77329 * 0.02562 * 20 19 17 39 39 H 1.08002 * 119.89806 * 180.27688 * 21 20 19 40 40 H 0.96703 * 113.99849 * 359.97438 * 25 24 23 41 41 H 1.08001 * 120.26259 * 359.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4242 7 6 2.6112 -0.6619 -3.5093 8 7 2.9290 -1.9378 -3.4489 9 14 2.7902 0.2701 -5.1183 10 1 3.3049 -0.6469 -6.1669 11 1 1.4669 0.8022 -5.5320 12 1 3.7411 1.3958 -4.9350 13 6 2.0400 -0.7212 1.2492 14 1 3.1263 -0.6443 1.2951 15 6 1.6352 -2.1954 1.1880 16 7 1.4559 -0.1036 2.4424 17 6 2.0914 -0.1938 3.6275 18 8 3.1490 -0.7879 3.7065 19 6 1.5027 0.4294 4.8303 20 6 0.2876 1.1184 4.7374 21 6 -0.2682 1.6947 5.8443 22 6 0.3735 1.6106 7.0722 23 8 0.0830 2.0692 8.3102 24 6 1.0695 1.6915 9.1410 25 8 1.1185 1.9732 10.4623 26 7 1.9739 1.0131 8.4876 27 6 1.5951 0.9259 7.1820 28 6 2.1585 0.3335 6.0552 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2489 -1.6318 -1.1526 33 1 2.8364 -2.4217 -2.6134 34 1 2.0698 -2.6550 0.3003 35 1 1.9990 -2.7094 2.0777 36 1 0.5489 -2.2724 1.1420 37 1 0.6118 0.3701 2.3794 38 1 -0.2160 1.1915 3.7847 39 1 -1.2083 2.2203 5.7630 40 1 0.3645 2.4867 10.7832 41 1 3.0979 -0.1940 6.1298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755239594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:22 Heat of formation + Delta-G solvation = -14.804376 kcal Electronic energy + Delta-G solvation = -25798.001173 eV Core-core repulsion = 21873.754570 eV Total energy + Delta-G solvation = -3924.246602 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.79607 -40.26870 -38.90113 -37.84922 -36.90656 -35.22572 -34.21375 -32.11407 -31.23191 -30.12717 -28.98044 -28.10958 -25.14300 -24.18713 -23.87817 -23.11545 -22.33952 -21.27675 -20.03511 -19.47895 -18.34014 -18.01284 -17.73881 -17.48160 -16.24902 -15.91519 -15.64176 -15.13545 -14.85102 -14.57000 -14.48319 -14.36771 -14.18743 -13.86453 -13.63575 -13.44879 -13.02724 -12.89896 -12.52581 -12.02889 -12.01440 -11.78341 -11.57119 -11.55835 -10.90675 -10.86639 -10.64824 -10.45921 -10.25112 -10.03160 -9.94211 -9.30724 -9.22851 -8.97535 -8.90372 -8.80143 -7.10258 -6.12803 -3.14066 0.29744 0.35159 1.38699 1.91156 2.46843 2.63153 3.11376 3.47954 3.50628 3.54043 3.71580 3.95942 4.27946 4.41307 4.53278 4.55767 4.65995 4.85113 5.06749 5.25640 5.36374 5.46187 5.53632 5.57627 5.61861 5.67809 5.70305 5.76358 5.93101 5.99898 6.01535 6.14817 6.19410 6.26016 6.32814 6.49124 6.59573 6.75725 6.95579 7.18617 7.52291 7.77232 8.19974 8.72462 9.17960 10.04160 10.17912 11.35128 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.035737 B = 0.002219 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.308181 B =12612.895713 C =12905.711361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.173 3.827 3 H 0.054 0.946 4 N -0.730 5.730 5 C -0.333 4.333 6 H 0.065 0.935 7 C -0.044 4.044 8 N -0.941 5.941 9 Si 1.080 2.920 10 H -0.285 1.285 11 H -0.295 1.295 12 H -0.295 1.295 13 C 0.135 3.865 14 H 0.090 0.910 15 C -0.159 4.159 16 N -0.711 5.711 17 C 0.558 3.442 18 O -0.531 6.531 19 C -0.121 4.121 20 C -0.069 4.069 21 C -0.087 4.087 22 C 0.024 3.976 23 O -0.243 6.243 24 C 0.436 3.564 25 O -0.389 6.389 26 N -0.468 5.468 27 C 0.039 3.961 28 C -0.002 4.002 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.370 0.630 33 H 0.255 0.745 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.397 0.603 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.426 0.574 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.671 9.163 25.006 28.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.062 3.938 3 H 0.072 0.928 4 N -0.375 5.375 5 C -0.463 4.463 6 H 0.083 0.917 7 C -0.242 4.242 8 N -0.586 5.586 9 Si 0.911 3.089 10 H -0.210 1.210 11 H -0.223 1.223 12 H -0.222 1.222 13 C 0.030 3.970 14 H 0.108 0.892 15 C -0.218 4.218 16 N -0.364 5.364 17 C 0.344 3.656 18 O -0.408 6.408 19 C -0.125 4.125 20 C -0.088 4.088 21 C -0.105 4.105 22 C -0.026 4.026 23 O -0.140 6.140 24 C 0.186 3.814 25 O -0.189 6.189 26 N -0.214 5.214 27 C -0.072 4.072 28 C -0.022 4.022 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.205 0.795 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.234 0.766 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.283 0.717 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.463 8.314 23.750 26.548 hybrid contribution -2.102 0.894 1.808 2.913 sum -10.565 9.208 25.558 29.148 Atomic orbital electron populations 1.22530 0.99247 1.01256 0.99817 1.20298 0.92174 0.95632 0.85666 0.92832 1.42448 1.79341 1.09945 1.05771 1.20009 1.42340 0.95143 0.88848 0.91701 1.25783 0.99194 0.97511 1.01669 1.70889 1.50876 1.08407 1.28455 0.83237 0.75856 0.74301 0.75505 1.21035 1.22288 1.22242 1.21396 0.99208 0.92867 0.83502 0.89166 1.22144 1.01626 0.95753 1.02255 1.46136 1.25680 1.56439 1.08181 1.17976 0.84561 0.80144 0.82952 1.90810 1.22029 1.42627 1.85376 1.19868 0.96439 1.02193 0.94034 1.20887 0.94264 0.95335 0.98307 1.19491 1.01160 1.02901 0.86990 1.20084 0.97635 1.00668 0.84247 1.84465 1.45515 1.65772 1.18201 1.23054 0.82740 0.91204 0.84361 1.85201 1.49168 1.73048 1.11522 1.70941 1.25354 1.21861 1.03265 1.19474 0.94200 1.02235 0.91285 1.20373 0.99532 0.94768 0.87503 0.92834 0.94883 0.92215 0.79489 0.93376 0.90936 0.92747 0.92351 0.76560 0.83610 0.83883 0.71687 0.82811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.01 37.16 0.33 -2.34 16 2 C 0.17 3.22 2.93 -67.93 -0.20 3.02 16 3 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 4 N -0.73 -17.46 5.03 -53.43 -0.27 -17.73 16 5 C -0.33 -9.05 9.93 -15.06 -0.15 -9.20 16 6 H 0.06 1.73 7.83 -52.48 -0.41 1.32 16 7 C -0.04 -1.25 5.50 -17.43 -0.10 -1.34 16 8 N -0.94 -28.68 13.70 55.49 0.76 -27.92 16 9 Si 1.08 25.52 29.92 -169.99 -5.09 20.44 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.30 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.13 2.23 2.62 -67.93 -0.18 2.05 16 14 H 0.09 1.73 7.58 -51.93 -0.39 1.33 16 15 C -0.16 -2.58 9.00 37.16 0.33 -2.24 16 16 N -0.71 -9.32 4.94 -54.79 -0.27 -9.59 16 17 C 0.56 7.89 7.73 -12.39 -0.10 7.79 16 18 O -0.53 -9.55 15.99 5.31 0.08 -9.47 16 19 C -0.12 -1.36 5.87 -104.99 -0.62 -1.98 16 20 C -0.07 -0.56 9.47 -39.51 -0.37 -0.94 16 21 C -0.09 -0.66 9.99 -39.96 -0.40 -1.06 16 22 C 0.02 0.23 7.42 -38.53 -0.29 -0.06 16 23 O -0.24 -2.05 10.78 -20.30 -0.22 -2.27 16 24 C 0.44 3.87 9.53 52.23 0.50 4.37 16 25 O -0.39 -1.95 13.62 -40.53 -0.55 -2.50 16 26 N -0.47 -5.71 11.38 -12.82 -0.15 -5.86 16 27 C 0.04 0.46 7.22 -84.71 -0.61 -0.16 16 28 C 0.00 -0.02 9.64 -38.84 -0.37 -0.40 16 29 H 0.05 0.86 6.56 -51.93 -0.34 0.52 16 30 H 0.03 0.39 6.29 -51.93 -0.33 0.06 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.37 9.12 4.60 -40.82 -0.19 8.93 16 33 H 0.26 7.64 6.77 -40.82 -0.28 7.36 16 34 H 0.07 1.29 6.29 -51.93 -0.33 0.96 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 37 H 0.40 4.05 4.58 -40.82 -0.19 3.86 16 38 H 0.15 0.81 6.37 -52.49 -0.33 0.47 16 39 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.43 -0.73 9.06 45.56 0.41 -0.32 16 41 H 0.15 1.93 7.64 -52.49 -0.40 1.53 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -36.37 345.12 -6.31 -42.67 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -3.60 Total: 9.50 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.21 Total: -2.47 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.07 Total: -61.10 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.69 Total: -14.24 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.09 Total: 20.44 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.37 -6.31 -42.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755239594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.868 kcal (2) G-P(sol) polarization free energy of solvation -36.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds