Wall clock time and date at job start Tue Mar 31 2020 13:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 N 1.46498 * 109.47120 * 240.00144 * 2 1 3 5 5 C 1.36935 * 120.00239 * 84.99640 * 4 2 1 6 6 H 1.08004 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00368 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 359.72375 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72253 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72375 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72186 * 9 7 5 13 13 C 1.52998 * 109.47443 * 120.00087 * 2 1 3 14 14 H 1.09001 * 109.47463 * 185.00072 * 13 2 1 15 15 C 1.52999 * 109.47112 * 64.99513 * 13 2 1 16 16 N 1.46504 * 109.47065 * 304.99901 * 13 2 1 17 17 C 1.34771 * 119.99931 * 205.00047 * 16 13 2 18 18 O 1.21565 * 120.00363 * 359.97438 * 17 16 13 19 19 C 1.47710 * 119.99741 * 179.97438 * 17 16 13 20 20 C 1.39993 * 119.96564 * 359.72391 * 19 17 16 21 21 C 1.36609 * 120.46131 * 179.77522 * 20 19 17 22 22 C 1.38805 * 120.20831 * 0.48613 * 21 20 19 23 23 O 1.35181 * 133.65397 * 179.78168 * 22 21 20 24 24 C 1.34390 * 108.24677 * 179.97438 * 23 22 21 25 25 O 1.35183 * 124.90944 * 179.97438 * 24 23 22 26 26 N 1.30583 * 110.18380 * 359.97438 * 24 23 22 27 27 C 1.36225 * 108.68160 * 359.97438 * 26 24 23 28 28 C 1.39211 * 133.66879 * 180.02562 * 27 26 24 29 29 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46933 * 300.00179 * 1 2 3 31 31 H 1.09004 * 109.47411 * 59.99789 * 1 2 3 32 32 H 0.97004 * 119.99747 * 265.00379 * 4 2 1 33 33 H 0.97000 * 120.00481 * 0.27542 * 8 7 5 34 34 H 1.08997 * 109.47031 * 60.00462 * 15 13 2 35 35 H 1.09004 * 109.47231 * 179.97438 * 15 13 2 36 36 H 1.09001 * 109.47413 * 300.00590 * 15 13 2 37 37 H 0.97001 * 119.99721 * 25.00195 * 16 13 2 38 38 H 1.08002 * 119.77329 * 0.02562 * 20 19 17 39 39 H 1.08002 * 119.89806 * 180.27688 * 21 20 19 40 40 H 0.96703 * 113.99849 * 359.97438 * 25 24 23 41 41 H 1.08001 * 120.26259 * 359.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4242 7 6 2.6112 -0.6619 -3.5093 8 7 2.9290 -1.9378 -3.4489 9 14 2.7902 0.2701 -5.1183 10 1 3.3049 -0.6469 -6.1669 11 1 1.4669 0.8022 -5.5320 12 1 3.7411 1.3958 -4.9350 13 6 2.0400 -0.7212 1.2492 14 1 3.1263 -0.6443 1.2951 15 6 1.6352 -2.1954 1.1880 16 7 1.4559 -0.1036 2.4424 17 6 2.0914 -0.1938 3.6275 18 8 3.1490 -0.7879 3.7065 19 6 1.5027 0.4294 4.8303 20 6 0.2876 1.1184 4.7374 21 6 -0.2682 1.6947 5.8443 22 6 0.3735 1.6106 7.0722 23 8 0.0830 2.0692 8.3102 24 6 1.0695 1.6915 9.1410 25 8 1.1185 1.9732 10.4623 26 7 1.9739 1.0131 8.4876 27 6 1.5951 0.9259 7.1820 28 6 2.1585 0.3335 6.0552 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2489 -1.6318 -1.1526 33 1 2.8364 -2.4217 -2.6134 34 1 2.0698 -2.6550 0.3003 35 1 1.9990 -2.7094 2.0777 36 1 0.5489 -2.2724 1.1420 37 1 0.6118 0.3701 2.3794 38 1 -0.2160 1.1915 3.7847 39 1 -1.2083 2.2203 5.7630 40 1 0.3645 2.4867 10.7832 41 1 3.0979 -0.1940 6.1298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755239594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:21 Heat of formation + Delta-G solvation = -46.350309 kcal Electronic energy + Delta-G solvation = -25799.369107 eV Core-core repulsion = 21873.754570 eV Total energy + Delta-G solvation = -3925.614537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.48995 -41.37578 -39.56271 -38.78736 -38.13492 -36.03860 -35.82314 -33.71081 -32.11101 -31.26569 -30.11404 -29.70857 -26.19972 -25.87585 -24.66525 -24.50957 -23.08694 -22.29627 -20.92498 -20.69239 -19.53389 -19.23834 -18.78912 -18.41269 -17.33252 -17.06065 -16.38785 -16.32374 -16.27956 -15.81994 -15.54463 -15.40940 -15.18948 -14.90377 -14.82660 -14.69122 -14.14337 -14.05106 -13.64708 -13.41339 -13.26511 -13.06930 -12.76188 -12.62861 -12.32360 -12.25237 -12.00850 -11.84659 -11.75735 -11.64254 -11.28416 -11.14974 -10.91913 -10.29522 -9.96395 -9.51448 -9.11531 -8.34668 -5.29386 -0.47841 -0.38356 0.75296 1.22558 1.60795 1.66484 1.70769 1.79977 1.86708 2.11576 2.59409 2.75257 3.23181 3.43797 3.48422 3.73677 3.78369 3.80706 3.82467 3.94972 4.00896 4.09063 4.25107 4.51573 4.54261 4.61761 4.79133 4.81139 4.90271 4.92425 4.93871 5.00616 5.04219 5.13222 5.20557 5.29763 5.42143 5.59312 5.65080 5.76809 6.44961 6.53340 6.62788 7.09621 7.14096 8.02965 8.13326 9.16922 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.035737 B = 0.002219 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.308181 B =12612.895713 C =12905.711361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.170 3.830 3 H 0.047 0.953 4 N -0.746 5.746 5 C -0.324 4.324 6 H 0.070 0.930 7 C -0.108 4.108 8 N -0.977 5.977 9 Si 1.127 2.873 10 H -0.297 1.297 11 H -0.275 1.275 12 H -0.280 1.280 13 C 0.149 3.851 14 H 0.057 0.943 15 C -0.152 4.152 16 N -0.695 5.695 17 C 0.559 3.441 18 O -0.578 6.578 19 C -0.126 4.126 20 C -0.060 4.060 21 C -0.068 4.068 22 C 0.021 3.979 23 O -0.231 6.231 24 C 0.454 3.546 25 O -0.382 6.382 26 N -0.520 5.520 27 C 0.018 3.982 28 C -0.023 4.023 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.362 0.638 33 H 0.243 0.757 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.415 0.585 38 H 0.181 0.819 39 H 0.185 0.815 40 H 0.453 0.547 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.932 11.678 26.215 31.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.061 3.939 3 H 0.065 0.935 4 N -0.391 5.391 5 C -0.456 4.456 6 H 0.088 0.912 7 C -0.299 4.299 8 N -0.626 5.626 9 Si 0.952 3.048 10 H -0.223 1.223 11 H -0.201 1.201 12 H -0.207 1.207 13 C 0.043 3.957 14 H 0.075 0.925 15 C -0.210 4.210 16 N -0.349 5.349 17 C 0.347 3.653 18 O -0.459 6.459 19 C -0.130 4.130 20 C -0.078 4.078 21 C -0.086 4.086 22 C -0.030 4.030 23 O -0.127 6.127 24 C 0.204 3.796 25 O -0.187 6.187 26 N -0.268 5.268 27 C -0.092 4.092 28 C -0.043 4.043 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.197 0.803 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.256 0.744 38 H 0.198 0.802 39 H 0.203 0.797 40 H 0.316 0.684 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.808 10.903 25.038 29.753 hybrid contribution -1.116 0.197 1.678 2.025 sum -12.924 11.100 26.717 31.686 Atomic orbital electron populations 1.22362 0.96129 1.01802 1.01538 1.20493 0.94173 0.94770 0.84488 0.93457 1.42671 1.79870 1.09847 1.06678 1.20353 1.39993 0.95391 0.89847 0.91207 1.27151 0.99808 0.97657 1.05268 1.70995 1.53817 1.09722 1.28024 0.82630 0.76941 0.73411 0.71804 1.22346 1.20076 1.20668 1.20934 0.97475 0.93204 0.84087 0.92478 1.22055 1.02657 0.95194 1.01092 1.45815 1.26105 1.56162 1.06786 1.18412 0.83845 0.79310 0.83734 1.90793 1.24259 1.44752 1.86080 1.19605 0.97931 1.03433 0.92057 1.21199 0.92633 0.93886 1.00092 1.19944 1.01879 1.01419 0.85369 1.20443 0.96981 1.00207 0.85320 1.84492 1.45048 1.65438 1.17716 1.23070 0.81833 0.89437 0.85228 1.85223 1.50967 1.73233 1.09318 1.70847 1.27513 1.24356 1.04117 1.19513 0.95443 1.03100 0.91110 1.20239 0.99439 0.96046 0.88602 0.92888 0.89785 0.93862 0.80339 0.94639 0.93175 0.92834 0.90350 0.74398 0.80201 0.79730 0.68356 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 9.01 71.98 0.65 -3.92 16 2 C 0.17 6.15 2.93 44.99 0.13 6.28 16 3 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 4 N -0.75 -36.05 5.03 -322.95 -1.62 -37.67 16 5 C -0.32 -17.66 9.93 84.03 0.83 -16.83 16 6 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 7 C -0.11 -6.19 5.50 84.86 0.47 -5.72 16 8 N -0.98 -61.06 13.70 21.65 0.30 -60.76 16 9 Si 1.13 51.44 29.92 68.60 2.05 53.49 16 10 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.15 4.89 2.62 44.99 0.12 5.01 16 14 H 0.06 2.28 7.58 -2.39 -0.02 2.26 16 15 C -0.15 -4.90 9.00 71.98 0.65 -4.25 16 16 N -0.69 -16.96 4.94 -445.54 -2.20 -19.16 16 17 C 0.56 15.64 7.73 86.75 0.67 16.32 16 18 O -0.58 -21.79 15.99 -3.92 -0.06 -21.86 16 19 C -0.13 -2.70 5.87 -20.10 -0.12 -2.82 16 20 C -0.06 -0.74 9.47 22.31 0.21 -0.52 16 21 C -0.07 -0.72 9.99 22.02 0.22 -0.50 16 22 C 0.02 0.35 7.42 22.95 0.17 0.52 16 23 O -0.23 -3.24 10.78 10.06 0.11 -3.13 16 24 C 0.45 7.30 9.53 130.43 1.24 8.55 16 25 O -0.38 -2.95 13.62 -62.36 -0.85 -3.80 16 26 N -0.52 -12.71 11.38 -422.84 -4.81 -17.53 16 27 C 0.02 0.43 7.22 39.24 0.28 0.71 16 28 C -0.02 -0.57 9.64 22.75 0.22 -0.35 16 29 H 0.05 1.55 6.56 -2.39 -0.02 1.54 16 30 H 0.08 1.54 6.29 -2.39 -0.02 1.53 16 31 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.36 18.48 4.60 -92.71 -0.43 18.05 16 33 H 0.24 15.16 6.77 -92.71 -0.63 14.53 16 34 H 0.05 1.85 6.29 -2.39 -0.02 1.83 16 35 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.08 2.19 6.56 -2.39 -0.02 2.18 16 37 H 0.42 6.80 4.58 -92.71 -0.42 6.37 16 38 H 0.18 0.92 6.37 -2.91 -0.02 0.90 16 39 H 0.19 0.50 8.06 -2.91 -0.02 0.48 16 40 H 0.45 -3.01 9.06 -74.06 -0.67 -3.68 16 41 H 0.13 3.70 7.64 -2.91 -0.02 3.68 16 Total: -1.00 -83.59 345.12 -1.60 -85.19 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -0.25 Total: 22.76 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 5.75 Total: 2.46 kcal Atomic # 7 Polarization: -126.78 SS G_CDS: -8.34 Total: -135.12 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.80 Total: -28.78 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 2.05 Total: 53.49 kcal Total: -83.59 -1.60 -85.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755239594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.839 kcal (2) G-P(sol) polarization free energy of solvation -83.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds