Wall clock time and date at job start Tue Mar 31 2020 14:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46835 * 2 1 4 4 C 1.53000 * 109.47405 * 240.00186 * 2 1 3 5 5 N 1.46498 * 109.47044 * 184.99618 * 4 2 1 6 6 C 1.46500 * 120.00067 * 269.99871 * 5 4 2 7 7 C 1.34777 * 120.00163 * 89.99928 * 5 4 2 8 8 O 1.21622 * 119.99479 * 3.85077 * 7 5 4 9 9 C 1.47322 * 120.00157 * 184.12121 * 7 5 4 10 10 C 1.39498 * 120.31099 * 311.20916 * 9 7 5 11 11 C 1.38048 * 120.22068 * 179.97438 * 10 9 7 12 12 C 1.38359 * 120.67583 * 359.97438 * 11 10 9 13 13 C 1.38392 * 120.25377 * 0.02562 * 12 11 10 14 14 O 1.35318 * 133.76655 * 180.02562 * 13 12 11 15 15 C 1.34332 * 108.10992 * 179.34422 * 14 13 12 16 16 O 1.35098 * 124.95875 * 180.12083 * 15 14 13 17 17 N 1.30848 * 110.07999 * 0.57456 * 15 14 13 18 18 C 1.35544 * 108.77971 * 359.51224 * 17 15 14 19 19 N 1.46498 * 109.47360 * 119.99710 * 2 1 3 20 20 C 1.36939 * 120.00538 * 275.00299 * 19 2 1 21 21 H 1.08001 * 119.99623 * 0.02562 * 20 19 2 22 22 C 1.38812 * 120.00247 * 179.97438 * 20 19 2 23 23 N 1.31617 * 119.99956 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99983 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.46888 * 90.00503 * 24 22 20 26 26 H 1.48497 * 109.47188 * 210.00681 * 24 22 20 27 27 H 1.48507 * 109.47165 * 330.00612 * 24 22 20 28 28 H 1.09004 * 109.47145 * 299.99715 * 1 2 3 29 29 H 1.08990 * 109.47263 * 60.00160 * 1 2 3 30 30 H 1.09006 * 109.46835 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46906 * 65.00151 * 4 2 1 32 32 H 1.08995 * 109.47203 * 304.99796 * 4 2 1 33 33 H 1.08997 * 109.47448 * 272.14076 * 6 5 4 34 34 H 1.08996 * 109.47305 * 32.14520 * 6 5 4 35 35 H 1.09006 * 109.46940 * 152.14443 * 6 5 4 36 36 H 1.08005 * 119.88717 * 0.02562 * 10 9 7 37 37 H 1.07998 * 119.65799 * 180.02562 * 11 10 9 38 38 H 1.08004 * 119.87459 * 179.97438 * 12 11 10 39 39 H 0.96705 * 113.99953 * 270.51828 * 16 15 14 40 40 H 0.97004 * 119.99599 * 95.00313 * 19 2 1 41 41 H 0.96999 * 120.00246 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1905 6 6 4.3343 0.2343 -1.7612 7 6 4.0759 -1.8984 -0.6115 8 8 3.3855 -2.8115 -0.2005 9 6 5.5411 -1.9617 -0.4711 10 6 6.3654 -1.6872 -1.5625 11 6 7.7381 -1.7466 -1.4287 12 6 8.3155 -2.0772 -0.2155 13 6 7.5202 -2.3541 0.8827 14 8 7.7819 -2.6973 2.1652 15 6 6.6105 -2.8326 2.8086 16 8 6.4766 -3.1672 4.1106 17 7 5.6179 -2.6023 1.9878 18 6 6.1227 -2.2948 0.7680 19 7 2.0184 -0.6905 1.1962 20 6 2.1492 -0.0074 2.3758 21 1 1.8919 1.0403 2.4244 22 6 2.6114 -0.6619 3.5093 23 7 2.9245 -1.9390 3.4502 24 14 2.7905 0.2701 5.1182 25 1 1.5228 0.1798 5.8862 26 1 3.8948 -0.3236 5.9140 27 1 3.0963 1.6952 4.8334 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -0.1582 -2.1370 32 1 1.6055 -1.7197 -1.2952 33 1 4.5110 0.0292 -2.8170 34 1 3.8253 1.1925 -1.6575 35 1 5.2875 0.2702 -1.2337 36 1 5.9282 -1.4266 -2.5151 37 1 8.3677 -1.5319 -2.2795 38 1 9.3909 -2.1203 -0.1255 39 1 6.4223 -4.1198 4.2683 40 1 2.2491 -1.6317 1.1526 41 1 3.2479 -2.3963 4.2421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755595353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:20 Heat of formation + Delta-G solvation = 9.716746 kcal Electronic energy + Delta-G solvation = -28221.182785 eV Core-core repulsion = 24297.999498 eV Total energy + Delta-G solvation = -3923.183287 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.96064 -39.66847 -37.93462 -37.07972 -35.78283 -34.36645 -34.12981 -31.85813 -30.71146 -29.19283 -28.39883 -26.92633 -25.66791 -23.66425 -23.33491 -22.77676 -22.16408 -19.91915 -19.14513 -18.98892 -17.99291 -17.15440 -16.93819 -16.59551 -16.01832 -15.53383 -15.22121 -14.86841 -14.41223 -14.21890 -13.78999 -13.60955 -13.45351 -12.95351 -12.87678 -12.48266 -12.18533 -12.13716 -12.00320 -11.80113 -11.66657 -11.52239 -11.31106 -11.07426 -10.99419 -10.67028 -10.49491 -10.23606 -9.88153 -9.83296 -9.33651 -9.21050 -8.69936 -8.61242 -8.19258 -8.00108 -6.56895 -5.34314 -2.64555 0.57518 1.19492 2.17112 2.67026 3.16824 3.44286 3.58905 3.63487 3.65733 3.78356 3.95258 4.54855 4.78972 4.83960 4.95086 5.12882 5.22251 5.25584 5.40714 5.54721 5.56733 5.78739 5.84715 5.87580 5.92428 5.95193 6.14332 6.17745 6.19291 6.22238 6.29433 6.40565 6.50944 6.60912 6.81068 6.94071 7.06392 7.26944 7.38835 7.88150 7.99101 7.99351 8.75556 8.83392 9.90654 10.52044 10.90494 11.82259 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.009990 B = 0.007570 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.222704 B = 3698.129125 C = 5838.550861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.040 0.960 4 C 0.111 3.889 5 N -0.603 5.603 6 C 0.079 3.921 7 C 0.570 3.430 8 O -0.497 6.497 9 C -0.055 4.055 10 C -0.099 4.099 11 C -0.106 4.106 12 C -0.077 4.077 13 C 0.005 3.995 14 O -0.237 6.237 15 C 0.406 3.594 16 O -0.400 6.400 17 N -0.377 5.377 18 C 0.081 3.919 19 N -0.717 5.717 20 C -0.255 4.255 21 H 0.058 0.942 22 C 0.002 3.998 23 N -0.882 5.882 24 Si 0.886 3.114 25 H -0.294 1.294 26 H -0.293 1.293 27 H -0.288 1.288 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.414 0.586 40 H 0.398 0.602 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.152 -0.393 -12.916 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.058 0.942 4 C -0.012 4.012 5 N -0.337 5.337 6 C -0.065 4.065 7 C 0.357 3.643 8 O -0.370 6.370 9 C -0.059 4.059 10 C -0.118 4.118 11 C -0.125 4.125 12 C -0.096 4.096 13 C -0.046 4.046 14 O -0.132 6.132 15 C 0.156 3.844 16 O -0.207 6.207 17 N -0.115 5.115 18 C -0.035 4.035 19 N -0.363 5.363 20 C -0.387 4.387 21 H 0.076 0.924 22 C -0.197 4.197 23 N -0.527 5.527 24 Si 0.718 3.282 25 H -0.222 1.222 26 H -0.220 1.220 27 H -0.215 1.215 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.153 0.847 39 H 0.274 0.726 40 H 0.236 0.764 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.209 -0.301 -12.174 15.891 hybrid contribution 0.916 -0.004 1.288 1.581 sum 11.125 -0.305 -10.886 15.568 Atomic orbital electron populations 1.22420 0.99348 1.00852 0.99745 1.20606 0.91956 0.95484 0.87705 0.94183 1.21856 0.78790 1.02199 0.98362 1.47445 1.06819 1.20614 1.58788 1.21876 0.96197 0.91243 0.97173 1.17703 0.86494 0.82616 0.77498 1.90823 1.63306 1.37425 1.45492 1.19195 0.94423 1.01138 0.91177 1.21277 0.93268 0.99286 0.98000 1.20803 0.94584 1.00641 0.96439 1.19884 0.99378 1.01347 0.88993 1.19956 0.95676 1.05606 0.83362 1.84476 1.36266 1.72024 1.20441 1.22946 0.77640 0.97415 0.86405 1.84947 1.92237 1.31029 1.12448 1.71738 1.25863 1.15396 0.98550 1.19490 0.89729 1.01349 0.92883 1.42588 1.77650 1.11570 1.04480 1.18978 1.38621 0.93379 0.87687 0.92386 1.24673 1.02218 0.95895 0.96961 1.69723 1.48014 1.07537 1.27436 0.86546 0.76987 0.78871 0.85812 1.22241 1.22000 1.21467 0.92726 0.94826 0.93449 0.91093 0.90165 0.93131 0.91330 0.90999 0.84120 0.83951 0.84725 0.72635 0.76379 0.94031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.49 37.16 0.35 -2.76 16 2 C 0.15 3.27 3.20 -67.93 -0.22 3.05 16 3 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 4 C 0.11 1.96 5.16 -4.04 -0.02 1.94 16 5 N -0.60 -10.61 2.77 -182.89 -0.51 -11.12 16 6 C 0.08 1.01 9.08 59.85 0.54 1.55 16 7 C 0.57 11.83 6.42 -12.57 -0.08 11.75 16 8 O -0.50 -12.49 14.57 5.26 0.08 -12.42 16 9 C -0.06 -1.00 4.91 -104.73 -0.51 -1.51 16 10 C -0.10 -1.22 7.62 -39.18 -0.30 -1.52 16 11 C -0.11 -1.08 10.00 -39.61 -0.40 -1.47 16 12 C -0.08 -0.92 10.04 -39.48 -0.40 -1.32 16 13 C 0.00 0.08 7.41 -38.73 -0.29 -0.21 16 14 O -0.24 -4.12 10.79 -20.55 -0.22 -4.34 16 15 C 0.41 7.94 9.54 52.34 0.50 8.43 16 16 O -0.40 -6.76 13.62 -40.29 -0.55 -7.31 16 17 N -0.38 -8.73 11.36 -12.56 -0.14 -8.88 16 18 C 0.08 1.64 6.92 -84.43 -0.58 1.05 16 19 N -0.72 -19.37 4.52 -53.42 -0.24 -19.61 16 20 C -0.25 -7.54 9.93 -15.06 -0.15 -7.69 16 21 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 22 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 23 N -0.88 -27.42 13.06 55.49 0.72 -26.70 16 24 Si 0.89 23.81 29.55 -169.99 -5.02 18.79 16 25 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 26 H -0.29 -8.00 7.11 56.52 0.40 -7.59 16 27 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 32 H 0.08 1.54 7.37 -51.93 -0.38 1.16 16 33 H 0.05 0.47 7.49 -51.93 -0.39 0.08 16 34 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 35 H 0.07 0.94 5.75 -51.93 -0.30 0.64 16 36 H 0.14 1.33 6.51 -52.48 -0.34 0.99 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.41 4.30 9.06 45.56 0.41 4.71 16 40 H 0.40 11.73 5.18 -40.82 -0.21 11.52 16 41 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 349.09 15.07 5.26 5.26 Total: -1.00 -39.47 349.09 -6.40 -45.87 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.13 Total: 9.21 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -1.65 Total: 11.23 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -0.17 Total: -66.30 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.69 Total: -24.07 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.02 Total: 18.79 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -39.47 -6.40 -45.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755595353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.587 kcal (2) G-P(sol) polarization free energy of solvation -39.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds