Wall clock time and date at job start Tue Mar 31 2020 14:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46835 * 2 1 4 4 C 1.53000 * 109.47405 * 240.00186 * 2 1 3 5 5 N 1.46498 * 109.47044 * 184.99618 * 4 2 1 6 6 C 1.46500 * 120.00067 * 269.99871 * 5 4 2 7 7 C 1.34777 * 120.00163 * 89.99928 * 5 4 2 8 8 O 1.21622 * 119.99479 * 3.85077 * 7 5 4 9 9 C 1.47322 * 120.00157 * 184.12121 * 7 5 4 10 10 C 1.39498 * 120.31099 * 311.20916 * 9 7 5 11 11 C 1.38048 * 120.22068 * 179.97438 * 10 9 7 12 12 C 1.38359 * 120.67583 * 359.97438 * 11 10 9 13 13 C 1.38392 * 120.25377 * 0.02562 * 12 11 10 14 14 O 1.35318 * 133.76655 * 180.02562 * 13 12 11 15 15 C 1.34332 * 108.10992 * 179.34422 * 14 13 12 16 16 O 1.35098 * 124.95875 * 180.12083 * 15 14 13 17 17 N 1.30848 * 110.07999 * 0.57456 * 15 14 13 18 18 C 1.35544 * 108.77971 * 359.51224 * 17 15 14 19 19 N 1.46498 * 109.47360 * 119.99710 * 2 1 3 20 20 C 1.36939 * 120.00538 * 275.00299 * 19 2 1 21 21 H 1.08001 * 119.99623 * 0.02562 * 20 19 2 22 22 C 1.38812 * 120.00247 * 179.97438 * 20 19 2 23 23 N 1.31617 * 119.99956 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99983 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.46888 * 90.00503 * 24 22 20 26 26 H 1.48497 * 109.47188 * 210.00681 * 24 22 20 27 27 H 1.48507 * 109.47165 * 330.00612 * 24 22 20 28 28 H 1.09004 * 109.47145 * 299.99715 * 1 2 3 29 29 H 1.08990 * 109.47263 * 60.00160 * 1 2 3 30 30 H 1.09006 * 109.46835 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46906 * 65.00151 * 4 2 1 32 32 H 1.08995 * 109.47203 * 304.99796 * 4 2 1 33 33 H 1.08997 * 109.47448 * 272.14076 * 6 5 4 34 34 H 1.08996 * 109.47305 * 32.14520 * 6 5 4 35 35 H 1.09006 * 109.46940 * 152.14443 * 6 5 4 36 36 H 1.08005 * 119.88717 * 0.02562 * 10 9 7 37 37 H 1.07998 * 119.65799 * 180.02562 * 11 10 9 38 38 H 1.08004 * 119.87459 * 179.97438 * 12 11 10 39 39 H 0.96705 * 113.99953 * 270.51828 * 16 15 14 40 40 H 0.97004 * 119.99599 * 95.00313 * 19 2 1 41 41 H 0.96999 * 120.00246 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1905 6 6 4.3343 0.2343 -1.7612 7 6 4.0759 -1.8984 -0.6115 8 8 3.3855 -2.8115 -0.2005 9 6 5.5411 -1.9617 -0.4711 10 6 6.3654 -1.6872 -1.5625 11 6 7.7381 -1.7466 -1.4287 12 6 8.3155 -2.0772 -0.2155 13 6 7.5202 -2.3541 0.8827 14 8 7.7819 -2.6973 2.1652 15 6 6.6105 -2.8326 2.8086 16 8 6.4766 -3.1672 4.1106 17 7 5.6179 -2.6023 1.9878 18 6 6.1227 -2.2948 0.7680 19 7 2.0184 -0.6905 1.1962 20 6 2.1492 -0.0074 2.3758 21 1 1.8919 1.0403 2.4244 22 6 2.6114 -0.6619 3.5093 23 7 2.9245 -1.9390 3.4502 24 14 2.7905 0.2701 5.1182 25 1 1.5228 0.1798 5.8862 26 1 3.8948 -0.3236 5.9140 27 1 3.0963 1.6952 4.8334 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -0.1582 -2.1370 32 1 1.6055 -1.7197 -1.2952 33 1 4.5110 0.0292 -2.8170 34 1 3.8253 1.1925 -1.6575 35 1 5.2875 0.2702 -1.2337 36 1 5.9282 -1.4266 -2.5151 37 1 8.3677 -1.5319 -2.2795 38 1 9.3909 -2.1203 -0.1255 39 1 6.4223 -4.1198 4.2683 40 1 2.2491 -1.6317 1.1526 41 1 3.2479 -2.3963 4.2421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755595353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:19 Heat of formation + Delta-G solvation = -25.206062 kcal Electronic energy + Delta-G solvation = -28222.697151 eV Core-core repulsion = 24297.999498 eV Total energy + Delta-G solvation = -3924.697653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.23291 -41.04013 -39.20135 -38.31703 -37.41602 -35.92633 -35.53637 -33.82748 -31.97128 -30.39592 -30.32256 -28.15666 -27.00618 -25.56352 -24.80285 -23.96713 -23.51946 -21.52774 -20.44968 -20.33616 -19.31457 -19.00027 -18.32918 -17.95080 -17.38338 -16.96605 -16.49628 -16.44105 -16.02174 -15.55654 -15.39774 -15.08571 -14.89485 -14.47304 -14.09898 -13.77809 -13.67062 -13.57615 -13.37287 -13.21618 -12.96661 -12.85499 -12.81019 -12.72443 -12.60491 -12.40351 -12.23711 -12.10666 -11.78705 -11.48489 -11.27413 -10.81772 -10.67051 -9.80719 -9.46693 -9.33401 -8.72231 -7.62624 -4.92629 -0.58794 0.10520 0.92403 1.40096 1.40995 1.42259 1.49259 1.77356 2.23230 2.59124 2.63108 2.73992 3.39664 3.61473 3.79299 3.83387 4.04471 4.11467 4.15984 4.24035 4.35154 4.39858 4.57005 4.65300 4.68032 4.74767 4.80710 4.90296 4.95413 5.00676 5.08287 5.13225 5.21994 5.23964 5.32382 5.52325 5.64306 5.66987 5.81456 6.24285 6.48581 6.54846 6.67839 7.38685 7.58380 8.41806 8.65436 9.52775 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.009990 B = 0.007570 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.222704 B = 3698.129125 C = 5838.550861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.041 0.959 4 C 0.117 3.883 5 N -0.603 5.603 6 C 0.070 3.930 7 C 0.561 3.439 8 O -0.562 6.562 9 C -0.097 4.097 10 C -0.074 4.074 11 C -0.078 4.078 12 C -0.065 4.065 13 C -0.012 4.012 14 O -0.233 6.233 15 C 0.396 3.604 16 O -0.411 6.411 17 N -0.442 5.442 18 C 0.033 3.967 19 N -0.733 5.733 20 C -0.258 4.258 21 H 0.057 0.943 22 C -0.054 4.054 23 N -0.904 5.904 24 Si 0.944 3.056 25 H -0.291 1.291 26 H -0.302 1.302 27 H -0.280 1.280 28 H 0.031 0.969 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.125 0.875 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.178 0.822 37 H 0.206 0.794 38 H 0.176 0.824 39 H 0.435 0.565 40 H 0.384 0.616 41 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.353 1.720 -16.643 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.059 0.941 4 C -0.007 4.007 5 N -0.335 5.335 6 C -0.071 4.071 7 C 0.349 3.651 8 O -0.440 6.440 9 C -0.101 4.101 10 C -0.093 4.093 11 C -0.096 4.096 12 C -0.083 4.083 13 C -0.062 4.062 14 O -0.128 6.128 15 C 0.146 3.854 16 O -0.221 6.221 17 N -0.182 5.182 18 C -0.082 4.082 19 N -0.377 5.377 20 C -0.391 4.391 21 H 0.075 0.925 22 C -0.251 4.251 23 N -0.550 5.550 24 Si 0.775 3.225 25 H -0.219 1.219 26 H -0.229 1.229 27 H -0.206 1.206 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.143 0.857 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.195 0.805 37 H 0.222 0.778 38 H 0.193 0.807 39 H 0.299 0.701 40 H 0.220 0.780 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 12.413 1.876 -15.960 20.306 hybrid contribution 0.275 -0.595 2.259 2.352 sum 12.689 1.281 -13.701 18.718 Atomic orbital electron populations 1.22243 0.97663 1.00360 1.00937 1.20950 0.93072 0.95311 0.87303 0.94106 1.21812 0.79188 1.01245 0.98410 1.47613 1.07149 1.20778 1.57923 1.22226 0.95284 0.90107 0.99517 1.18302 0.87746 0.82468 0.76551 1.90767 1.65021 1.39964 1.48286 1.19348 0.93567 1.04720 0.92472 1.21789 0.94017 0.96170 0.97327 1.21555 0.93965 0.96858 0.97202 1.20613 1.01101 0.98898 0.87732 1.20612 0.95055 1.06650 0.83880 1.84440 1.35078 1.72173 1.21096 1.22870 0.78051 0.97754 0.86717 1.84876 1.92326 1.33294 1.11644 1.71564 1.28427 1.17373 1.00849 1.19907 0.91706 1.03712 0.92834 1.42775 1.78204 1.11148 1.05615 1.19233 1.37594 0.93336 0.88933 0.92515 1.25338 1.03117 0.96826 0.99801 1.69911 1.49037 1.08659 1.27387 0.85608 0.76445 0.77980 0.82423 1.21894 1.22943 1.20603 0.94973 0.90057 0.94775 0.85730 0.92435 0.88194 0.90512 0.91422 0.80462 0.77754 0.80673 0.70124 0.78012 0.95027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 9.49 71.98 0.68 -5.02 16 2 C 0.14 6.05 3.20 44.99 0.14 6.19 16 3 H 0.04 1.70 8.08 -2.38 -0.02 1.68 16 4 C 0.12 3.97 5.16 86.38 0.45 4.42 16 5 N -0.60 -20.47 2.77 -850.78 -2.36 -22.83 16 6 C 0.07 1.53 9.08 127.77 1.16 2.69 16 7 C 0.56 23.79 6.42 86.63 0.56 24.35 16 8 O -0.56 -30.16 14.57 -4.10 -0.06 -30.22 16 9 C -0.10 -3.49 4.91 -19.94 -0.10 -3.59 16 10 C -0.07 -1.53 7.62 22.53 0.17 -1.36 16 11 C -0.08 -1.11 10.00 22.25 0.22 -0.89 16 12 C -0.06 -1.29 10.04 22.34 0.22 -1.06 16 13 C -0.01 -0.40 7.41 22.82 0.17 -0.23 16 14 O -0.23 -8.37 10.79 9.19 0.10 -8.27 16 15 C 0.40 16.62 9.54 130.39 1.24 17.86 16 16 O -0.41 -15.05 13.62 -61.46 -0.84 -15.89 16 17 N -0.44 -22.01 11.36 -421.85 -4.79 -26.80 16 18 C 0.03 1.38 6.92 39.73 0.27 1.66 16 19 N -0.73 -41.04 4.52 -322.94 -1.46 -42.50 16 20 C -0.26 -15.80 9.93 84.03 0.83 -14.97 16 21 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 22 C -0.05 -3.40 5.50 84.86 0.47 -2.94 16 23 N -0.90 -59.40 13.06 21.65 0.28 -59.12 16 24 Si 0.94 50.96 29.55 68.60 2.03 52.99 16 25 H -0.29 -15.41 7.11 99.48 0.71 -14.70 16 26 H -0.30 -16.60 7.11 99.48 0.71 -15.90 16 27 H -0.28 -14.56 7.11 99.48 0.71 -13.85 16 28 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.03 1.34 8.14 -2.38 -0.02 1.33 16 31 H 0.12 2.86 8.07 -2.38 -0.02 2.84 16 32 H 0.06 2.24 7.37 -2.39 -0.02 2.22 16 33 H 0.10 1.22 7.49 -2.39 -0.02 1.21 16 34 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 35 H 0.07 1.55 5.75 -2.38 -0.01 1.54 16 36 H 0.18 2.28 6.51 -2.91 -0.02 2.26 16 37 H 0.21 0.53 8.06 -2.91 -0.02 0.51 16 38 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.44 10.24 9.06 -74.05 -0.67 9.57 16 40 H 0.38 23.94 5.18 -92.71 -0.48 23.46 16 41 H 0.24 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -97.37 349.09 -0.66 -98.02 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.06 Total: 27.52 kcal Atomic # 6 Polarization: 20.61 SS G_CDS: 6.50 Total: 27.11 kcal Atomic # 7 Polarization: -142.92 SS G_CDS: -8.33 Total: -151.25 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -0.80 Total: -54.38 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.03 Total: 52.99 kcal Total: -97.37 -0.66 -98.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755595353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.816 kcal (2) G-P(sol) polarization free energy of solvation -97.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds