Wall clock time and date at job start Tue Mar 31 2020 13:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47292 * 2 1 4 4 C 1.52997 * 109.46782 * 120.00057 * 2 1 3 5 5 N 1.46502 * 109.47454 * 65.00025 * 4 2 1 6 6 C 1.34780 * 119.99833 * 104.82885 * 5 4 2 7 7 O 1.21550 * 119.99582 * 179.00679 * 6 5 4 8 8 C 1.47854 * 120.00449 * 359.00158 * 6 5 4 9 9 C 1.39678 * 120.10224 * 330.68757 * 8 6 5 10 10 C 1.38038 * 120.04224 * 179.97438 * 9 8 6 11 11 C 1.38183 * 120.23983 * 359.95479 * 10 9 8 12 12 C 1.39172 * 120.20389 * 359.97438 * 11 10 9 13 13 S 1.76202 * 120.02254 * 179.97438 * 12 11 10 14 14 C 1.76204 * 99.99994 * 85.04392 * 13 12 11 15 15 H 1.08006 * 119.99798 * 5.01454 * 14 13 12 16 16 C 1.38724 * 119.99917 * 185.00828 * 14 13 12 17 17 N 1.31623 * 120.00158 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99857 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47036 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47275 * 120.00230 * 18 16 14 21 21 H 1.48502 * 109.47169 * 240.00482 * 18 16 14 22 22 C 1.38879 * 119.95995 * 0.27743 * 12 11 10 23 23 C 1.46494 * 119.99959 * 284.83369 * 5 4 2 24 24 C 1.52999 * 117.50225 * 197.31118 * 23 5 4 25 25 C 1.52993 * 117.50338 * 128.65106 * 23 5 4 26 26 H 1.09005 * 109.47671 * 59.99779 * 1 2 3 27 27 H 1.08999 * 109.47494 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47409 * 300.00345 * 1 2 3 29 29 H 1.09002 * 109.46887 * 240.00190 * 2 1 3 30 30 H 1.08995 * 109.47342 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47184 * 299.99923 * 3 2 1 32 32 H 1.08997 * 109.47084 * 59.99799 * 3 2 1 33 33 H 1.08996 * 109.47501 * 304.99734 * 4 2 1 34 34 H 1.09010 * 109.46746 * 184.99699 * 4 2 1 35 35 H 1.08003 * 119.97603 * 359.97438 * 9 8 6 36 36 H 1.08001 * 119.87913 * 179.97438 * 10 9 8 37 37 H 1.07999 * 119.89315 * 180.02562 * 11 10 9 38 38 H 0.97003 * 119.99442 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.12236 * 179.74537 * 22 12 11 40 40 H 1.09008 * 115.54883 * 342.97887 * 23 5 4 41 41 H 1.09003 * 117.49521 * 359.97438 * 24 23 5 42 42 H 1.08997 * 117.50031 * 145.01109 * 24 23 5 43 43 H 1.09005 * 117.49942 * 214.97717 * 25 23 5 44 44 H 1.08998 * 117.49634 * 359.97103 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6523 -2.1329 1.1906 6 6 2.5718 -3.0723 0.8930 7 8 2.2542 -4.2452 0.8621 8 6 3.9667 -2.6763 0.6040 9 6 4.2381 -1.4264 0.0428 10 6 5.5409 -1.0577 -0.2261 11 6 6.5814 -1.9211 0.0590 12 6 6.3227 -3.1684 0.6196 13 16 7.6530 -4.2659 0.9805 14 6 8.1162 -3.6719 2.5734 15 1 7.5344 -2.8974 3.0511 16 6 9.2279 -4.1993 3.2140 17 7 9.9371 -5.1429 2.6318 18 14 9.7185 -3.5701 4.9031 19 1 8.7648 -2.5170 5.3352 20 1 9.6912 -4.6914 5.8762 21 1 11.0891 -3.0019 4.8408 22 6 5.0147 -3.5500 0.8886 23 6 0.2654 -2.5233 1.4553 24 6 -0.0049 -3.9937 1.7805 25 6 -0.4253 -3.4193 0.4254 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6053 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2951 35 1 3.4281 -0.7479 -0.1810 36 1 5.7477 -0.0907 -0.6604 37 1 7.5986 -1.6268 -0.1533 38 1 10.7147 -5.5113 3.0797 39 1 4.8106 -4.5189 1.3199 40 1 -0.3450 -1.7754 1.9617 41 1 0.8492 -4.6707 1.7969 42 1 -0.7932 -4.2132 2.5004 43 1 -1.4902 -3.2612 0.2543 44 1 0.1521 -3.7179 -0.4495 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079397353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:33 Heat of formation + Delta-G solvation = 42.861135 kcal Electronic energy + Delta-G solvation = -24660.729948 eV Core-core repulsion = 21285.277124 eV Total energy + Delta-G solvation = -3375.452824 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92916 -38.29435 -37.29699 -35.84700 -33.24877 -32.52548 -30.64443 -30.58847 -27.51571 -26.45647 -25.59086 -24.26473 -22.60046 -22.36621 -21.75894 -20.74954 -19.47577 -17.87951 -17.33264 -16.61578 -16.17949 -15.50511 -15.32575 -14.87114 -14.79271 -14.40645 -14.38200 -13.99829 -13.66450 -13.44069 -13.26401 -12.99643 -12.73630 -12.57723 -12.42076 -12.17413 -11.73241 -11.54946 -11.39426 -11.21806 -11.16523 -11.12421 -11.05702 -10.96929 -10.79236 -10.63613 -10.39053 -9.90602 -9.32477 -9.17592 -9.00117 -8.62594 -8.42713 -7.98622 -6.72439 -6.30278 -4.04140 1.19269 1.64365 2.77806 2.89622 3.17476 3.18729 3.26796 3.45281 3.84390 4.03364 4.21871 4.41194 4.51423 4.55153 4.73021 4.82094 4.96266 5.05136 5.06426 5.11990 5.15500 5.21665 5.32223 5.39396 5.46123 5.46895 5.51453 5.58337 5.65688 5.67117 5.74117 5.81258 5.84378 5.94768 6.00236 6.03699 6.04199 6.23861 6.31146 6.58006 6.64443 6.72447 6.92288 7.18151 7.34060 7.55681 8.24419 8.30921 9.15442 10.76463 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.003492 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.433420 B = 8016.060878 C = 8572.843071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.149 4.149 4 C 0.087 3.913 5 N -0.580 5.580 6 C 0.567 3.433 7 O -0.527 6.527 8 C -0.153 4.153 9 C -0.118 4.118 10 C -0.142 4.142 11 C -0.056 4.056 12 C -0.105 4.105 13 S -0.035 6.035 14 C -0.520 4.520 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.870 5.870 18 Si 0.921 3.079 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.022 4.022 23 C 0.075 3.925 24 C -0.197 4.197 25 C -0.189 4.189 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.145 0.855 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.269 0.731 39 H 0.136 0.864 40 H 0.126 0.874 41 H 0.144 0.856 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.413 12.643 -4.575 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.139 4.139 3 C -0.207 4.207 4 C -0.036 4.036 5 N -0.310 5.310 6 C 0.358 3.642 7 O -0.405 6.405 8 C -0.158 4.158 9 C -0.136 4.136 10 C -0.162 4.162 11 C -0.077 4.077 12 C -0.216 4.216 13 S 0.200 5.800 14 C -0.667 4.667 15 H 0.094 0.906 16 C -0.136 4.136 17 N -0.505 5.505 18 Si 0.747 3.253 19 H -0.195 1.195 20 H -0.204 1.204 21 H -0.205 1.205 22 C -0.044 4.044 23 C -0.030 4.030 24 C -0.234 4.234 25 C -0.228 4.228 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.131 0.869 35 H 0.163 0.837 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.079 0.921 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.162 0.838 42 H 0.105 0.895 43 H 0.112 0.888 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.920 11.003 -5.162 21.653 hybrid contribution -0.263 1.572 1.688 2.322 sum -18.183 12.575 -3.474 22.379 Atomic orbital electron populations 1.22048 0.94672 1.02993 1.01528 1.21608 0.97018 0.96524 0.98724 1.21838 1.01465 0.95166 1.02265 1.22483 1.03266 0.79884 0.97939 1.47138 1.07670 1.06931 1.69251 1.18562 0.84961 0.84915 0.75784 1.90565 1.80241 1.18028 1.51681 1.19817 0.92510 0.96555 1.06935 1.22050 0.97979 0.95295 0.98289 1.21103 0.92599 1.00057 1.02411 1.22000 0.99384 0.92609 0.93690 1.22816 0.99074 0.99197 1.00479 1.83656 1.32167 1.40102 1.24123 1.22875 1.15666 1.26451 1.01718 0.90603 1.24999 0.94992 0.94800 0.98793 1.69999 1.17209 1.25272 1.38030 0.86075 0.78456 0.78831 0.81982 1.19524 1.20446 1.20455 1.21834 0.90690 0.98219 0.93617 1.21599 0.83126 0.94471 1.03779 1.24072 1.04985 0.96801 0.97545 1.23259 1.00071 1.04748 0.94734 0.92801 0.91110 0.92816 0.90325 0.92080 0.92163 0.92304 0.90764 0.86888 0.83740 0.85907 0.85147 0.92101 0.84658 0.85615 0.83814 0.89529 0.88830 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 8.38 37.16 0.31 -0.82 16 2 C -0.12 -0.96 2.16 -90.62 -0.20 -1.16 16 3 C -0.15 -0.99 9.09 37.15 0.34 -0.65 16 4 C 0.09 0.85 4.48 -4.04 -0.02 0.83 16 5 N -0.58 -7.21 2.87 -167.21 -0.48 -7.69 16 6 C 0.57 9.16 7.24 -12.32 -0.09 9.07 16 7 O -0.53 -9.81 12.50 5.32 0.07 -9.75 16 8 C -0.15 -2.59 5.49 -105.00 -0.58 -3.17 16 9 C -0.12 -1.65 7.41 -39.12 -0.29 -1.94 16 10 C -0.14 -2.05 10.02 -39.67 -0.40 -2.45 16 11 C -0.06 -1.01 9.79 -39.25 -0.38 -1.40 16 12 C -0.10 -2.24 5.45 -39.00 -0.21 -2.45 16 13 S -0.03 -0.90 21.41 -107.50 -2.30 -3.21 16 14 C -0.52 -14.53 9.46 30.91 0.29 -14.24 16 15 H 0.08 2.10 7.79 -52.48 -0.41 1.69 16 16 C 0.07 2.03 5.49 -17.46 -0.10 1.94 16 17 N -0.87 -25.29 13.22 55.49 0.73 -24.55 16 18 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 22 C -0.02 -0.44 9.34 -38.92 -0.36 -0.80 16 23 C 0.07 0.81 4.33 -67.94 -0.29 0.52 16 24 C -0.20 -2.42 9.64 -26.70 -0.26 -2.67 16 25 C -0.19 -2.08 8.90 -26.70 -0.24 -2.32 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.57 4.59 -51.93 -0.24 0.34 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.73 7.01 -51.93 -0.36 0.36 16 30 H 0.06 0.40 7.76 -51.93 -0.40 0.00 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.11 1.23 4.19 -51.92 -0.22 1.01 16 35 H 0.15 1.58 2.38 -52.48 -0.13 1.46 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.14 2.87 7.91 -52.48 -0.42 2.45 16 40 H 0.13 1.06 7.65 -51.92 -0.40 0.67 16 41 H 0.14 2.26 5.04 -52.92 -0.27 2.00 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 1.25 7.73 -51.93 -0.40 0.85 16 LS Contribution 361.04 15.07 5.44 5.44 Total: -1.00 -31.23 361.04 -10.21 -41.44 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.18 Total: 3.84 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -2.47 Total: -21.69 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.25 Total: -32.25 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.23 -10.21 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079397353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.305 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds