Wall clock time and date at job start Tue Mar 31 2020 13:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47292 * 2 1 4 4 C 1.52997 * 109.46782 * 120.00057 * 2 1 3 5 5 N 1.46502 * 109.47454 * 65.00025 * 4 2 1 6 6 C 1.34780 * 119.99833 * 104.82885 * 5 4 2 7 7 O 1.21550 * 119.99582 * 179.00679 * 6 5 4 8 8 C 1.47854 * 120.00449 * 359.00158 * 6 5 4 9 9 C 1.39678 * 120.10224 * 330.68757 * 8 6 5 10 10 C 1.38038 * 120.04224 * 179.97438 * 9 8 6 11 11 C 1.38183 * 120.23983 * 359.95479 * 10 9 8 12 12 C 1.39172 * 120.20389 * 359.97438 * 11 10 9 13 13 S 1.76202 * 120.02254 * 179.97438 * 12 11 10 14 14 C 1.76204 * 99.99994 * 85.04392 * 13 12 11 15 15 H 1.08006 * 119.99798 * 5.01454 * 14 13 12 16 16 C 1.38724 * 119.99917 * 185.00828 * 14 13 12 17 17 N 1.31623 * 120.00158 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99857 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47036 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47275 * 120.00230 * 18 16 14 21 21 H 1.48502 * 109.47169 * 240.00482 * 18 16 14 22 22 C 1.38879 * 119.95995 * 0.27743 * 12 11 10 23 23 C 1.46494 * 119.99959 * 284.83369 * 5 4 2 24 24 C 1.52999 * 117.50225 * 197.31118 * 23 5 4 25 25 C 1.52993 * 117.50338 * 128.65106 * 23 5 4 26 26 H 1.09005 * 109.47671 * 59.99779 * 1 2 3 27 27 H 1.08999 * 109.47494 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47409 * 300.00345 * 1 2 3 29 29 H 1.09002 * 109.46887 * 240.00190 * 2 1 3 30 30 H 1.08995 * 109.47342 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47184 * 299.99923 * 3 2 1 32 32 H 1.08997 * 109.47084 * 59.99799 * 3 2 1 33 33 H 1.08996 * 109.47501 * 304.99734 * 4 2 1 34 34 H 1.09010 * 109.46746 * 184.99699 * 4 2 1 35 35 H 1.08003 * 119.97603 * 359.97438 * 9 8 6 36 36 H 1.08001 * 119.87913 * 179.97438 * 10 9 8 37 37 H 1.07999 * 119.89315 * 180.02562 * 11 10 9 38 38 H 0.97003 * 119.99442 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.12236 * 179.74537 * 22 12 11 40 40 H 1.09008 * 115.54883 * 342.97887 * 23 5 4 41 41 H 1.09003 * 117.49521 * 359.97438 * 24 23 5 42 42 H 1.08997 * 117.50031 * 145.01109 * 24 23 5 43 43 H 1.09005 * 117.49942 * 214.97717 * 25 23 5 44 44 H 1.08998 * 117.49634 * 359.97103 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6523 -2.1329 1.1906 6 6 2.5718 -3.0723 0.8930 7 8 2.2542 -4.2452 0.8621 8 6 3.9667 -2.6763 0.6040 9 6 4.2381 -1.4264 0.0428 10 6 5.5409 -1.0577 -0.2261 11 6 6.5814 -1.9211 0.0590 12 6 6.3227 -3.1684 0.6196 13 16 7.6530 -4.2659 0.9805 14 6 8.1162 -3.6719 2.5734 15 1 7.5344 -2.8974 3.0511 16 6 9.2279 -4.1993 3.2140 17 7 9.9371 -5.1429 2.6318 18 14 9.7185 -3.5701 4.9031 19 1 8.7648 -2.5170 5.3352 20 1 9.6912 -4.6914 5.8762 21 1 11.0891 -3.0019 4.8408 22 6 5.0147 -3.5500 0.8886 23 6 0.2654 -2.5233 1.4553 24 6 -0.0049 -3.9937 1.7805 25 6 -0.4253 -3.4193 0.4254 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6053 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2951 35 1 3.4281 -0.7479 -0.1810 36 1 5.7477 -0.0907 -0.6604 37 1 7.5986 -1.6268 -0.1533 38 1 10.7147 -5.5113 3.0797 39 1 4.8106 -4.5189 1.3199 40 1 -0.3450 -1.7754 1.9617 41 1 0.8492 -4.6707 1.7969 42 1 -0.7932 -4.2132 2.5004 43 1 -1.4902 -3.2612 0.2543 44 1 0.1521 -3.7179 -0.4495 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079397353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:32 Heat of formation + Delta-G solvation = 26.020700 kcal Electronic energy + Delta-G solvation = -24661.460204 eV Core-core repulsion = 21285.277124 eV Total energy + Delta-G solvation = -3376.183080 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.05907 -39.59619 -38.27883 -36.79926 -34.65809 -34.18137 -32.02163 -31.91965 -28.06772 -27.74688 -27.29146 -25.44497 -23.91373 -23.31780 -22.94660 -21.43203 -20.73090 -19.72473 -18.52016 -17.78448 -17.38596 -16.93750 -16.77876 -16.43426 -15.76167 -15.58774 -15.47634 -15.25751 -14.87141 -14.65071 -14.41220 -14.24184 -13.93124 -13.57232 -13.32052 -13.08054 -12.99136 -12.95260 -12.84712 -12.63342 -12.53649 -12.31738 -12.06083 -12.03311 -11.72848 -11.64325 -11.41919 -11.26029 -11.23962 -10.76821 -10.55727 -9.99039 -9.63619 -9.44497 -8.82454 -8.39444 -6.20274 -0.18104 0.20808 1.29786 1.36660 1.46881 1.59781 1.63211 1.83245 2.23161 2.67714 2.93563 2.96222 3.30706 3.41133 3.73032 3.86698 3.90816 3.94897 4.01431 4.05467 4.10676 4.22333 4.33016 4.43846 4.50125 4.60061 4.63089 4.70140 4.79954 4.85942 4.88138 4.92387 5.04285 5.09233 5.11603 5.19599 5.26903 5.30421 5.35376 5.37942 5.47061 5.48055 5.53414 5.71693 5.82808 6.15687 6.24541 7.00680 7.04681 8.67957 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.003492 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.433420 B = 8016.060878 C = 8572.843071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.149 4.149 4 C 0.079 3.921 5 N -0.570 5.570 6 C 0.557 3.443 7 O -0.563 6.563 8 C -0.155 4.155 9 C -0.092 4.092 10 C -0.121 4.121 11 C -0.064 4.064 12 C -0.125 4.125 13 S -0.098 6.098 14 C -0.535 4.535 15 H 0.069 0.931 16 C 0.020 3.980 17 N -0.907 5.907 18 Si 0.994 3.006 19 H -0.264 1.264 20 H -0.273 1.273 21 H -0.266 1.266 22 C -0.045 4.045 23 C 0.081 3.919 24 C -0.217 4.217 25 C -0.178 4.178 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.184 0.816 36 H 0.174 0.826 37 H 0.132 0.868 38 H 0.274 0.726 39 H 0.105 0.895 40 H 0.164 0.836 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.755 16.916 -4.236 27.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.135 4.135 3 C -0.206 4.206 4 C -0.042 4.042 5 N -0.299 5.299 6 C 0.348 3.652 7 O -0.444 6.444 8 C -0.160 4.160 9 C -0.110 4.110 10 C -0.140 4.140 11 C -0.085 4.085 12 C -0.236 4.236 13 S 0.137 5.863 14 C -0.682 4.682 15 H 0.087 0.913 16 C -0.185 4.185 17 N -0.543 5.543 18 Si 0.816 3.184 19 H -0.188 1.188 20 H -0.198 1.198 21 H -0.191 1.191 22 C -0.067 4.067 23 C -0.023 4.023 24 C -0.255 4.255 25 C -0.217 4.217 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.201 0.799 36 H 0.192 0.808 37 H 0.150 0.850 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.181 0.819 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.143 0.857 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.283 15.309 -4.835 25.868 hybrid contribution 0.282 0.294 1.510 1.564 sum -20.000 15.604 -3.325 25.584 Atomic orbital electron populations 1.22037 0.93740 1.02721 1.02660 1.21565 0.97867 0.97170 0.96862 1.21850 1.01657 0.93860 1.03259 1.22737 1.02887 0.78335 1.00269 1.47223 1.07769 1.07486 1.67402 1.18576 0.85289 0.85108 0.76275 1.90593 1.80785 1.19660 1.53353 1.19963 0.92304 0.97087 1.06673 1.22520 0.99137 0.94065 0.95287 1.21563 0.91265 1.00967 1.00249 1.22068 1.00858 0.91812 0.93795 1.22460 0.97305 1.00076 1.03780 1.83581 1.34961 1.43608 1.24173 1.23086 1.15978 1.26316 1.02789 0.91304 1.26018 0.94733 0.94778 1.03001 1.70124 1.17773 1.26506 1.39932 0.84971 0.78511 0.78397 0.76531 1.18833 1.19805 1.19073 1.21549 0.91482 0.98121 0.95550 1.21966 0.82340 0.94441 1.03520 1.23942 1.04600 0.97452 0.99463 1.23230 1.01367 1.04033 0.93038 0.92105 0.92029 0.91363 0.91476 0.91807 0.91309 0.91298 0.88315 0.87968 0.79915 0.80821 0.85031 0.91700 0.87699 0.81899 0.87787 0.87324 0.85706 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.38 71.98 0.60 -0.95 16 2 C -0.12 -1.36 2.16 -10.80 -0.02 -1.38 16 3 C -0.15 -1.22 9.09 71.98 0.65 -0.56 16 4 C 0.08 1.26 4.48 86.38 0.39 1.64 16 5 N -0.57 -13.13 2.87 -801.21 -2.30 -15.44 16 6 C 0.56 18.24 7.24 86.79 0.63 18.87 16 7 O -0.56 -22.30 12.50 -3.87 -0.05 -22.34 16 8 C -0.16 -5.28 5.49 -20.11 -0.11 -5.39 16 9 C -0.09 -2.35 7.41 22.57 0.17 -2.18 16 10 C -0.12 -3.12 10.02 22.21 0.22 -2.90 16 11 C -0.06 -2.33 9.79 22.48 0.22 -2.11 16 12 C -0.12 -5.62 5.45 22.65 0.12 -5.49 16 13 S -0.10 -5.41 21.41 -56.49 -1.21 -6.62 16 14 C -0.53 -31.23 9.46 67.94 0.64 -30.59 16 15 H 0.07 3.97 7.79 -2.91 -0.02 3.94 16 16 C 0.02 1.13 5.49 84.84 0.47 1.60 16 17 N -0.91 -54.59 13.22 21.63 0.29 -54.31 16 18 Si 0.99 44.09 29.55 68.60 2.03 46.12 16 19 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 22 C -0.05 -1.94 9.34 22.70 0.21 -1.72 16 23 C 0.08 1.56 4.33 44.99 0.19 1.76 16 24 C -0.22 -5.23 9.64 30.62 0.30 -4.93 16 25 C -0.18 -3.64 8.90 30.61 0.27 -3.36 16 26 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.06 0.75 4.59 -2.39 -0.01 0.74 16 28 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.07 0.98 7.01 -2.39 -0.02 0.96 16 30 H 0.06 0.51 7.76 -2.39 -0.02 0.49 16 31 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.10 1.85 4.19 -2.38 -0.01 1.84 16 35 H 0.18 3.27 2.38 -2.91 -0.01 3.26 16 36 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.10 4.99 7.91 -2.91 -0.02 4.97 16 40 H 0.16 1.99 7.65 -2.38 -0.02 1.97 16 41 H 0.10 3.48 5.04 -18.17 -0.09 3.39 16 42 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.07 1.80 7.73 -2.39 -0.02 1.78 16 Total: -1.00 -74.93 361.04 4.64 -70.29 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.93 Total: 20.01 kcal Atomic # 6 Polarization: -42.67 SS G_CDS: 4.96 Total: -37.72 kcal Atomic # 7 Polarization: -67.73 SS G_CDS: -2.01 Total: -69.74 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.05 Total: -22.34 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -5.41 SS G_CDS: -1.21 Total: -6.62 kcal Total: -74.93 4.64 -70.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079397353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.314 kcal (2) G-P(sol) polarization free energy of solvation -74.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds