Wall clock time and date at job start Tue Mar 31 2020 12:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 110.01318 * 2 1 4 4 C 1.54268 * 110.02936 * 238.55563 * 2 1 3 5 5 C 1.54882 * 104.19690 * 264.32398 * 4 2 1 6 6 C 1.54969 * 102.78039 * 322.08656 * 5 4 2 7 7 C 1.53874 * 110.02970 * 121.39193 * 2 1 3 8 8 H 1.09000 * 110.03585 * 359.94798 * 7 2 1 9 9 N 1.46504 * 110.02927 * 238.56804 * 7 2 1 10 10 C 1.34778 * 120.00200 * 155.69348 * 9 7 2 11 11 O 1.21549 * 119.99379 * 0.02562 * 10 9 7 12 12 C 1.47864 * 120.00096 * 180.02562 * 10 9 7 13 13 C 1.39673 * 120.09792 * 359.97438 * 12 10 9 14 14 C 1.38046 * 120.03378 * 180.02562 * 13 12 10 15 15 C 1.38176 * 120.24335 * 359.95298 * 14 13 12 16 16 C 1.39183 * 120.20538 * 0.02742 * 15 14 13 17 17 S 1.76200 * 120.02270 * 180.02562 * 16 15 14 18 18 C 1.76201 * 99.99856 * 94.51520 * 17 16 15 19 19 H 1.07997 * 120.00753 * 354.88645 * 18 17 16 20 20 C 1.38731 * 119.99804 * 175.15553 * 18 17 16 21 21 N 1.31621 * 120.00055 * 179.72114 * 20 18 17 22 22 Si 1.86795 * 120.00066 * 359.73022 * 20 18 17 23 23 H 1.48506 * 109.47322 * 89.99803 * 22 20 18 24 24 H 1.48498 * 109.47217 * 209.99559 * 22 20 18 25 25 H 1.48507 * 109.47299 * 329.99547 * 22 20 18 26 26 C 1.38875 * 119.95724 * 0.26810 * 16 15 14 27 27 H 1.09005 * 109.47230 * 298.60642 * 1 2 3 28 28 H 1.09002 * 109.47414 * 58.61046 * 1 2 3 29 29 H 1.09005 * 109.47162 * 178.60686 * 1 2 3 30 30 H 1.09010 * 109.46869 * 181.39403 * 3 2 1 31 31 H 1.09001 * 109.47233 * 301.38561 * 3 2 1 32 32 H 1.08991 * 109.47405 * 61.39446 * 3 2 1 33 33 H 1.08995 * 110.48895 * 23.00692 * 4 2 1 34 34 H 1.09006 * 110.48008 * 145.64586 * 4 2 1 35 35 H 1.08999 * 110.76013 * 80.37704 * 5 4 2 36 36 H 1.09003 * 110.75650 * 203.56682 * 5 4 2 37 37 H 1.09004 * 110.47813 * 279.24028 * 6 5 4 38 38 H 1.08995 * 110.53259 * 156.56545 * 6 5 4 39 39 H 0.97000 * 119.99977 * 335.68979 * 9 7 2 40 40 H 1.07997 * 119.98594 * 0.02562 * 13 12 10 41 41 H 1.07992 * 119.87600 * 179.97438 * 14 13 12 42 42 H 1.08004 * 119.90061 * 180.02562 * 15 14 13 43 43 H 0.97000 * 120.00270 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.12303 * 179.70311 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 6 2.0584 -0.7561 -1.2365 5 6 2.3280 -2.1905 -0.7182 6 6 2.8872 -1.9410 0.7055 7 6 2.0570 -0.7530 1.2341 8 1 1.2229 -1.1177 1.8334 9 7 2.9033 0.1320 2.0384 10 6 3.0712 -0.1085 3.3539 11 8 2.5209 -1.0600 3.8727 12 6 3.9249 0.7851 4.1657 13 6 4.5586 1.8787 3.5714 14 6 5.3557 2.7118 4.3305 15 6 5.5296 2.4693 5.6796 16 6 4.9025 1.3826 6.2823 17 16 5.1272 1.0783 8.0032 18 6 3.7110 1.9053 8.6476 19 1 3.0685 2.4697 7.9880 20 6 3.4244 1.8361 10.0032 21 7 2.3696 2.4584 10.4854 22 14 4.5355 0.8600 11.1441 23 1 5.6064 1.7450 11.6690 24 1 3.7362 0.3255 12.2758 25 1 5.1475 -0.2667 10.3947 26 6 4.1037 0.5356 5.5254 27 1 -0.3634 0.4921 0.9023 28 1 -0.3634 0.5353 -0.8773 29 1 -0.3634 -1.0274 -0.0250 30 1 3.1434 1.4273 -0.0250 31 1 1.6751 1.9622 -0.8773 32 1 1.7157 1.9474 0.9021 33 1 1.3061 -0.7705 -2.0251 34 1 2.9811 -0.3008 -1.5965 35 1 1.4031 -2.7655 -0.6739 36 1 3.0652 -2.6948 -1.3429 37 1 3.9439 -1.6775 0.6594 38 1 2.7391 -2.8193 1.3337 39 1 3.3428 0.8911 1.6242 40 1 4.4250 2.0727 2.5174 41 1 5.8448 3.5564 3.8683 42 1 6.1541 3.1249 6.2684 43 1 2.1694 2.4104 11.4333 44 1 3.6198 -0.3112 5.9893 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079548331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:39 Heat of formation + Delta-G solvation = -27.433405 kcal Electronic energy + Delta-G solvation = -24060.111454 eV Core-core repulsion = 20681.610430 eV Total energy + Delta-G solvation = -3378.501024 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.59808 -39.03382 -37.59584 -33.93667 -32.54706 -32.49366 -30.99981 -30.60735 -28.03075 -27.53451 -25.67664 -24.89079 -23.44261 -22.32906 -21.14646 -20.26164 -19.26940 -18.23758 -17.30735 -16.46742 -15.91490 -15.36583 -15.33881 -15.12115 -14.94759 -14.46591 -14.29782 -13.92341 -13.80405 -13.46872 -13.31084 -13.01864 -12.90917 -12.54002 -12.47731 -12.21698 -11.95527 -11.79233 -11.36729 -11.34283 -11.19998 -11.15098 -11.08649 -10.88233 -10.87183 -10.75359 -10.62104 -9.95160 -9.76041 -9.24772 -9.08669 -9.03298 -8.63538 -8.15792 -7.12416 -6.32162 -4.07773 1.11390 1.59236 2.86781 3.06337 3.17041 3.25908 3.40797 3.50735 4.06642 4.11057 4.26804 4.28849 4.45838 4.80421 4.90002 4.93263 4.97490 4.99567 5.03373 5.05764 5.06914 5.18161 5.26575 5.34726 5.36216 5.42031 5.54388 5.60593 5.63054 5.66015 5.75248 5.79192 5.79884 5.89084 5.91279 5.99087 6.05442 6.08260 6.18647 6.47637 6.53666 6.57441 6.83243 7.11261 7.52453 7.91843 8.32188 8.44886 9.11402 10.77236 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.022190 B = 0.002837 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.544690 B = 9867.442674 C =10134.634995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 C -0.148 4.148 4 C -0.114 4.114 5 C -0.124 4.124 6 C -0.135 4.135 7 C 0.149 3.851 8 H 0.093 0.907 9 N -0.727 5.727 10 C 0.562 3.438 11 O -0.534 6.534 12 C -0.152 4.152 13 C -0.087 4.087 14 C -0.139 4.139 15 C -0.053 4.053 16 C -0.084 4.084 17 S -0.113 6.113 18 C -0.508 4.508 19 H 0.091 0.909 20 C 0.095 3.905 21 N -0.876 5.876 22 Si 0.854 3.146 23 H -0.267 1.267 24 H -0.272 1.272 25 H -0.235 1.235 26 C -0.016 4.016 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.400 0.600 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.272 0.728 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.752 -3.198 -24.830 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 C -0.206 4.206 4 C -0.152 4.152 5 C -0.161 4.161 6 C -0.174 4.174 7 C 0.044 3.956 8 H 0.111 0.889 9 N -0.382 5.382 10 C 0.350 3.650 11 O -0.411 6.411 12 C -0.157 4.157 13 C -0.106 4.106 14 C -0.159 4.159 15 C -0.074 4.074 16 C -0.195 4.195 17 S 0.121 5.879 18 C -0.655 4.655 19 H 0.109 0.891 20 C -0.114 4.114 21 N -0.513 5.513 22 Si 0.678 3.322 23 H -0.192 1.192 24 H -0.197 1.197 25 H -0.159 1.159 26 C -0.038 4.038 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.239 0.761 40 H 0.135 0.865 41 H 0.144 0.856 42 H 0.151 0.849 43 H 0.082 0.918 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.059 -4.410 -23.665 24.160 hybrid contribution -0.500 0.815 -0.181 0.974 sum 1.558 -3.595 -23.845 24.165 Atomic orbital electron populations 1.21901 0.93515 1.02119 1.02095 1.21411 0.96313 0.95459 0.94488 1.21933 1.00536 0.95450 1.02642 1.22485 1.00916 0.95327 0.96464 1.22466 1.01030 0.96661 0.95990 1.22812 0.99904 0.98499 0.96165 1.21682 0.93459 0.89397 0.91078 0.88882 1.46295 1.51214 1.31908 1.08811 1.18410 0.80512 0.84428 0.81638 1.90765 1.48383 1.30123 1.71827 1.19865 1.02688 0.98186 0.94931 1.21158 0.96445 0.94136 0.98860 1.21040 1.00470 1.00104 0.94274 1.21907 0.96308 0.94953 0.94230 1.22176 0.99718 0.97101 1.00464 1.83037 1.37536 1.73867 0.93500 1.22247 1.10705 1.35669 0.96856 0.89096 1.24737 0.94704 0.94712 0.97209 1.69923 1.25396 1.41446 1.14506 0.86786 0.81294 0.82276 0.81830 1.19192 1.19706 1.15886 1.21887 0.93012 0.97616 0.91281 0.92282 0.92328 0.92251 0.92467 0.91931 0.91751 0.91308 0.91360 0.91310 0.91384 0.91158 0.90945 0.76123 0.86531 0.85647 0.84919 0.91811 0.84176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.14 37.16 0.30 -0.75 16 2 C -0.08 -0.59 0.94 -153.39 -0.14 -0.74 16 3 C -0.15 -1.03 7.04 37.16 0.26 -0.77 16 4 C -0.11 -0.75 5.90 -25.08 -0.15 -0.90 16 5 C -0.12 -0.90 6.91 -24.70 -0.17 -1.07 16 6 C -0.14 -1.31 6.54 -25.03 -0.16 -1.48 16 7 C 0.15 1.57 2.87 -66.81 -0.19 1.38 16 8 H 0.09 1.19 7.12 -51.93 -0.37 0.82 16 9 N -0.73 -8.52 4.44 -53.65 -0.24 -8.76 16 10 C 0.56 9.09 7.77 -12.32 -0.10 9.00 16 11 O -0.53 -10.60 16.01 5.32 0.09 -10.51 16 12 C -0.15 -2.54 5.87 -104.99 -0.62 -3.16 16 13 C -0.09 -1.17 9.54 -39.12 -0.37 -1.55 16 14 C -0.14 -1.94 10.02 -39.67 -0.40 -2.34 16 15 C -0.05 -0.93 9.79 -39.25 -0.38 -1.31 16 16 C -0.08 -1.76 5.45 -38.99 -0.21 -1.97 16 17 S -0.11 -2.77 19.38 -107.50 -2.08 -4.85 16 18 C -0.51 -14.66 10.01 30.91 0.31 -14.35 16 19 H 0.09 2.85 8.02 -52.49 -0.42 2.43 16 20 C 0.10 2.76 5.50 -17.46 -0.10 2.67 16 21 N -0.88 -26.48 13.97 55.49 0.78 -25.70 16 22 Si 0.85 21.04 27.73 -169.99 -4.71 16.33 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.23 -5.65 6.74 56.52 0.38 -5.27 16 26 C -0.02 -0.33 9.34 -38.92 -0.36 -0.69 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.35 6.91 -51.92 -0.36 -0.01 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.51 7.71 -51.93 -0.40 0.11 16 33 H 0.07 0.40 7.84 -51.93 -0.41 -0.01 16 34 H 0.07 0.42 7.84 -51.93 -0.41 0.01 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.40 3.71 3.82 -40.82 -0.16 3.56 16 40 H 0.12 1.11 6.40 -52.49 -0.34 0.77 16 41 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.13 2.18 8.06 -52.48 -0.42 1.76 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.14 3.05 7.65 -52.49 -0.40 2.65 16 LS Contribution 366.89 15.07 5.53 5.53 Total: -1.00 -32.68 366.89 -9.77 -42.44 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.64 Total: 3.54 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -2.48 Total: -18.02 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.54 Total: -34.46 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.71 Total: 16.33 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.08 Total: -4.85 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.68 -9.77 -42.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079548331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.011 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds