Wall clock time and date at job start Tue Mar 31 2020 13:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47084 * 2 1 4 4 C 1.53001 * 109.46705 * 239.99902 * 2 1 3 5 5 N 1.46500 * 109.46916 * 184.91830 * 4 2 1 6 6 C 1.46501 * 120.00111 * 83.57252 * 5 4 2 7 7 C 1.50699 * 109.47105 * 96.06214 * 6 5 4 8 8 H 1.08006 * 120.00091 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00276 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00297 * 180.02562 * 9 7 6 11 11 Si 1.86807 * 119.99617 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46602 * 90.00350 * 11 9 7 13 13 H 1.48506 * 109.46671 * 210.00067 * 11 9 7 14 14 H 1.48496 * 109.47176 * 330.00053 * 11 9 7 15 15 C 1.34779 * 119.99840 * 263.57403 * 5 4 2 16 16 O 1.21275 * 120.00471 * 4.08477 * 15 5 4 17 17 C 1.50706 * 119.99463 * 184.08502 * 15 5 4 18 18 H 1.08997 * 109.26238 * 49.62363 * 17 15 5 19 19 C 1.54138 * 109.27006 * 290.19276 * 17 15 5 20 20 S 1.83304 * 101.08729 * 267.87878 * 19 17 15 21 21 C 1.77440 * 96.59886 * 335.12330 * 20 19 17 22 22 C 1.38819 * 130.56916 * 195.49549 * 21 20 19 23 23 C 1.38023 * 120.16024 * 179.72065 * 22 21 20 24 24 C 1.38325 * 119.28953 * 0.02562 * 23 22 21 25 25 C 1.37701 * 120.54770 * 0.08111 * 24 23 22 26 26 C 1.38885 * 108.27471 * 15.41857 * 21 20 19 27 27 H 1.09001 * 109.47505 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46779 * 299.99822 * 1 2 3 29 29 H 1.09002 * 109.47068 * 59.99532 * 1 2 3 30 30 H 1.08997 * 109.47034 * 119.99975 * 2 1 3 31 31 H 1.08996 * 109.47416 * 54.57324 * 3 2 1 32 32 H 1.09000 * 109.47231 * 174.57709 * 3 2 1 33 33 H 1.09007 * 109.47086 * 294.57558 * 3 2 1 34 34 H 1.08994 * 109.47516 * 304.92274 * 4 2 1 35 35 H 1.09002 * 109.47178 * 64.92117 * 4 2 1 36 36 H 1.09000 * 109.47080 * 216.06474 * 6 5 4 37 37 H 1.09001 * 109.46811 * 336.06668 * 6 5 4 38 38 H 0.97001 * 119.99882 * 179.97438 * 10 9 7 39 39 H 1.08998 * 111.09578 * 25.83335 * 19 17 15 40 40 H 1.08996 * 111.09514 * 149.92874 * 19 17 15 41 41 H 1.07999 * 119.92018 * 359.74131 * 22 21 20 42 42 H 1.08002 * 120.35704 * 179.97438 * 23 22 21 43 43 H 1.08003 * 119.72802 * 180.12630 * 24 23 22 44 44 H 1.07991 * 119.47488 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5001 -0.8247 -1.1916 6 6 4.1282 -1.9148 -0.4409 7 6 4.4679 -3.0420 -1.3816 8 1 4.2392 -2.9550 -2.4336 9 6 5.0706 -4.1845 -0.8994 10 7 5.3675 -5.1680 -1.7204 11 14 5.4667 -4.3347 0.9200 12 1 4.3125 -4.9430 1.6292 13 1 6.6649 -5.1942 1.0963 14 1 5.7377 -2.9866 1.4805 15 6 4.2657 0.0830 -1.8291 16 8 3.7486 1.0268 -2.3883 17 6 5.7643 -0.0749 -1.8471 18 1 6.0152 -1.0909 -2.1520 19 6 6.3200 0.1818 -0.4325 20 16 6.6881 1.9754 -0.5185 21 6 6.8891 2.0581 -2.2796 22 6 7.4583 3.0406 -3.0781 23 6 7.5068 2.8788 -4.4480 24 6 6.9827 1.7301 -5.0128 25 6 6.4161 0.7565 -4.2207 26 6 6.3560 0.9014 -2.8335 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5995 1.9836 0.8373 32 1 3.1257 1.4440 0.0971 33 1 1.7581 1.9275 -0.9346 34 1 1.6064 -1.7203 -1.2945 35 1 1.7503 -0.1591 -2.1371 36 1 5.0392 -1.5510 0.0343 37 1 3.4386 -2.2743 0.3229 38 1 5.7918 -5.9716 -1.3812 39 1 5.5683 -0.0284 0.3283 40 1 7.2267 -0.3968 -0.2562 41 1 7.8645 3.9336 -2.6264 42 1 7.9486 3.6414 -5.0724 43 1 7.0187 1.5953 -6.0837 44 1 6.0124 -0.1337 -4.6799 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083774574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:06 Heat of formation + Delta-G solvation = -11.196667 kcal Electronic energy + Delta-G solvation = -25607.025394 eV Core-core repulsion = 22229.228448 eV Total energy + Delta-G solvation = -3377.796946 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.10894 -38.61129 -36.09471 -34.71397 -33.64567 -32.40413 -30.67820 -29.41845 -28.17675 -26.85202 -26.11508 -24.38899 -22.68546 -22.57957 -21.38298 -19.87651 -18.51845 -17.47041 -17.18200 -16.56644 -15.86130 -15.37637 -15.13647 -14.82300 -14.52924 -14.29492 -14.18299 -13.86581 -13.29734 -13.26928 -12.84890 -12.72549 -12.54226 -12.43618 -12.27620 -12.14061 -11.98245 -11.68617 -11.48023 -11.33998 -11.12593 -10.98985 -10.78150 -10.72042 -10.61949 -10.32148 -10.23633 -9.99082 -9.70454 -9.47972 -9.20674 -8.81368 -8.58629 -7.79844 -7.20600 -6.31822 -4.34231 1.34665 1.51240 1.77524 2.41764 3.09531 3.16043 3.19745 3.22538 3.62149 3.96255 4.16819 4.61425 4.80745 4.98136 5.05510 5.06023 5.15460 5.18552 5.23273 5.38423 5.45317 5.55206 5.60646 5.73982 5.80742 5.85668 5.92942 5.93791 6.08314 6.12584 6.14194 6.21994 6.27604 6.30687 6.38500 6.42344 6.52571 6.53764 6.60168 6.65850 6.71678 7.04561 7.26594 7.33117 8.03219 8.29568 8.72074 8.85389 9.27127 10.80367 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.010311 B = 0.005952 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.851657 B = 4703.128903 C = 5992.851580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.135 4.135 4 C 0.124 3.876 5 N -0.588 5.588 6 C 0.199 3.801 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.079 3.921 10 N -0.887 5.887 11 Si 0.868 3.132 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.263 1.263 15 C 0.534 3.466 16 O -0.546 6.546 17 C -0.081 4.081 18 H 0.140 0.860 19 C -0.070 4.070 20 S -0.160 6.160 21 C -0.066 4.066 22 C -0.094 4.094 23 C -0.108 4.108 24 C -0.122 4.122 25 C -0.079 4.079 26 C -0.066 4.066 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.033 0.967 38 H 0.268 0.732 39 H 0.122 0.878 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 11.497 0.926 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.192 4.192 4 C 0.001 3.999 5 N -0.318 5.318 6 C 0.078 3.922 7 C -0.582 4.582 8 H 0.097 0.903 9 C -0.125 4.125 10 N -0.524 5.524 11 Si 0.694 3.306 12 H -0.198 1.198 13 H -0.207 1.207 14 H -0.188 1.188 15 C 0.321 3.679 16 O -0.424 6.424 17 C -0.103 4.103 18 H 0.157 0.843 19 C -0.218 4.218 20 S 0.082 5.918 21 C -0.179 4.179 22 C -0.118 4.118 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.099 4.099 26 C -0.071 4.071 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.140 0.860 40 H 0.127 0.873 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.411 12.618 1.691 12.738 hybrid contribution 0.164 -1.459 0.015 1.469 sum 0.575 11.159 1.706 11.303 Atomic orbital electron populations 1.21751 0.95120 1.01580 1.01504 1.21525 0.95450 0.97128 0.99175 1.21738 1.01119 0.95273 1.01105 1.21437 0.80217 1.00581 0.97695 1.47811 1.05693 1.27485 1.50858 1.20010 0.93654 0.85901 0.92651 1.21354 1.41045 0.99342 0.96504 0.90305 1.24872 0.94784 0.95357 0.97525 1.69882 1.41029 1.06436 1.35012 0.86981 0.78808 0.78971 0.85843 1.19805 1.20742 1.18794 1.19772 0.87800 0.81911 0.78464 1.90631 1.74587 1.31323 1.45866 1.20750 0.94097 1.02922 0.92540 0.84253 1.24492 1.05411 0.92980 0.98921 1.85832 1.89032 1.13413 1.03545 1.21959 1.02396 0.97634 0.95868 1.20303 1.00341 0.97999 0.93128 1.20998 0.99990 0.97749 0.94009 1.20894 0.99546 0.94127 0.99687 1.20836 0.97919 0.99402 0.91727 1.20337 0.97991 0.94307 0.94500 0.92655 0.92909 0.92721 0.91351 0.93910 0.92865 0.92310 0.90562 0.90449 0.94624 0.94926 0.92232 0.86020 0.87289 0.85942 0.85512 0.85803 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 2 C -0.11 -1.69 3.12 -90.62 -0.28 -1.97 16 3 C -0.13 -2.09 7.98 37.16 0.30 -1.80 16 4 C 0.12 2.15 4.92 -4.04 -0.02 2.13 16 5 N -0.59 -11.40 2.26 -175.06 -0.40 -11.79 16 6 C 0.20 4.11 3.81 -5.19 -0.02 4.09 16 7 C -0.54 -13.44 8.81 -34.44 -0.30 -13.74 16 8 H 0.08 2.20 8.06 -52.48 -0.42 1.77 16 9 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 10 N -0.89 -24.66 13.96 55.43 0.77 -23.89 16 11 Si 0.87 18.85 27.47 -169.99 -4.67 14.18 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.26 -5.29 6.54 56.52 0.37 -4.92 16 15 C 0.53 10.57 5.64 -10.98 -0.06 10.51 16 16 O -0.55 -11.78 14.33 5.56 0.08 -11.70 16 17 C -0.08 -1.49 2.20 -92.24 -0.20 -1.70 16 18 H 0.14 2.76 6.91 -51.93 -0.36 2.40 16 19 C -0.07 -1.16 5.86 37.75 0.22 -0.93 16 20 S -0.16 -2.61 23.06 -107.50 -2.48 -5.09 16 21 C -0.07 -1.11 6.48 -39.13 -0.25 -1.36 16 22 C -0.09 -1.35 10.05 -39.45 -0.40 -1.74 16 23 C -0.11 -1.37 10.08 -39.63 -0.40 -1.77 16 24 C -0.12 -1.66 10.00 -39.75 -0.40 -2.06 16 25 C -0.08 -1.29 9.97 -39.27 -0.39 -1.68 16 26 C -0.07 -1.16 4.48 -103.79 -0.47 -1.63 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.92 6.96 -51.93 -0.36 0.56 16 33 H 0.06 0.97 7.92 -51.92 -0.41 0.56 16 34 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 35 H 0.08 1.39 7.29 -51.93 -0.38 1.02 16 36 H 0.04 0.71 3.55 -51.93 -0.18 0.53 16 37 H 0.03 0.66 7.45 -51.93 -0.39 0.28 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.12 2.00 5.99 -51.93 -0.31 1.68 16 40 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 41 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 42 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 44 H 0.12 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -28.65 361.53 -10.31 -38.96 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.63 Total: 7.01 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -2.43 Total: -13.12 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.38 Total: -35.68 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.67 Total: 14.18 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -2.48 Total: -5.09 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.65 -10.31 -38.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083774574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.762 kcal (2) G-P(sol) polarization free energy of solvation -28.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds