Wall clock time and date at job start Tue Mar 31 2020 13:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47084 * 2 1 4 4 C 1.53001 * 109.46705 * 239.99902 * 2 1 3 5 5 N 1.46500 * 109.46916 * 184.91830 * 4 2 1 6 6 C 1.46501 * 120.00111 * 83.57252 * 5 4 2 7 7 C 1.50699 * 109.47105 * 96.06214 * 6 5 4 8 8 H 1.08006 * 120.00091 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00276 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00297 * 180.02562 * 9 7 6 11 11 Si 1.86807 * 119.99617 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46602 * 90.00350 * 11 9 7 13 13 H 1.48506 * 109.46671 * 210.00067 * 11 9 7 14 14 H 1.48496 * 109.47176 * 330.00053 * 11 9 7 15 15 C 1.34779 * 119.99840 * 263.57403 * 5 4 2 16 16 O 1.21275 * 120.00471 * 4.08477 * 15 5 4 17 17 C 1.50706 * 119.99463 * 184.08502 * 15 5 4 18 18 H 1.08997 * 109.26238 * 49.62363 * 17 15 5 19 19 C 1.54138 * 109.27006 * 290.19276 * 17 15 5 20 20 S 1.83304 * 101.08729 * 267.87878 * 19 17 15 21 21 C 1.77440 * 96.59886 * 335.12330 * 20 19 17 22 22 C 1.38819 * 130.56916 * 195.49549 * 21 20 19 23 23 C 1.38023 * 120.16024 * 179.72065 * 22 21 20 24 24 C 1.38325 * 119.28953 * 0.02562 * 23 22 21 25 25 C 1.37701 * 120.54770 * 0.08111 * 24 23 22 26 26 C 1.38885 * 108.27471 * 15.41857 * 21 20 19 27 27 H 1.09001 * 109.47505 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46779 * 299.99822 * 1 2 3 29 29 H 1.09002 * 109.47068 * 59.99532 * 1 2 3 30 30 H 1.08997 * 109.47034 * 119.99975 * 2 1 3 31 31 H 1.08996 * 109.47416 * 54.57324 * 3 2 1 32 32 H 1.09000 * 109.47231 * 174.57709 * 3 2 1 33 33 H 1.09007 * 109.47086 * 294.57558 * 3 2 1 34 34 H 1.08994 * 109.47516 * 304.92274 * 4 2 1 35 35 H 1.09002 * 109.47178 * 64.92117 * 4 2 1 36 36 H 1.09000 * 109.47080 * 216.06474 * 6 5 4 37 37 H 1.09001 * 109.46811 * 336.06668 * 6 5 4 38 38 H 0.97001 * 119.99882 * 179.97438 * 10 9 7 39 39 H 1.08998 * 111.09578 * 25.83335 * 19 17 15 40 40 H 1.08996 * 111.09514 * 149.92874 * 19 17 15 41 41 H 1.07999 * 119.92018 * 359.74131 * 22 21 20 42 42 H 1.08002 * 120.35704 * 179.97438 * 23 22 21 43 43 H 1.08003 * 119.72802 * 180.12630 * 24 23 22 44 44 H 1.07991 * 119.47488 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5001 -0.8247 -1.1916 6 6 4.1282 -1.9148 -0.4409 7 6 4.4679 -3.0420 -1.3816 8 1 4.2392 -2.9550 -2.4336 9 6 5.0706 -4.1845 -0.8994 10 7 5.3675 -5.1680 -1.7204 11 14 5.4667 -4.3347 0.9200 12 1 4.3125 -4.9430 1.6292 13 1 6.6649 -5.1942 1.0963 14 1 5.7377 -2.9866 1.4805 15 6 4.2657 0.0830 -1.8291 16 8 3.7486 1.0268 -2.3883 17 6 5.7643 -0.0749 -1.8471 18 1 6.0152 -1.0909 -2.1520 19 6 6.3200 0.1818 -0.4325 20 16 6.6881 1.9754 -0.5185 21 6 6.8891 2.0581 -2.2796 22 6 7.4583 3.0406 -3.0781 23 6 7.5068 2.8788 -4.4480 24 6 6.9827 1.7301 -5.0128 25 6 6.4161 0.7565 -4.2207 26 6 6.3560 0.9014 -2.8335 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5995 1.9836 0.8373 32 1 3.1257 1.4440 0.0971 33 1 1.7581 1.9275 -0.9346 34 1 1.6064 -1.7203 -1.2945 35 1 1.7503 -0.1591 -2.1371 36 1 5.0392 -1.5510 0.0343 37 1 3.4386 -2.2743 0.3229 38 1 5.7918 -5.9716 -1.3812 39 1 5.5683 -0.0284 0.3283 40 1 7.2267 -0.3968 -0.2562 41 1 7.8645 3.9336 -2.6264 42 1 7.9486 3.6414 -5.0724 43 1 7.0187 1.5953 -6.0837 44 1 6.0124 -0.1337 -4.6799 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083774574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:06 Heat of formation + Delta-G solvation = -24.829094 kcal Electronic energy + Delta-G solvation = -25607.616541 eV Core-core repulsion = 22229.228448 eV Total energy + Delta-G solvation = -3378.388092 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.56688 -39.87436 -37.50459 -36.23052 -35.06834 -34.21748 -31.83115 -30.65301 -29.95240 -28.01995 -27.49827 -25.79294 -24.37136 -23.79458 -22.64680 -21.14543 -20.00874 -19.10164 -18.72786 -18.08009 -17.35227 -16.72075 -16.43659 -16.17013 -15.99361 -15.71520 -15.43439 -15.28106 -14.64283 -14.59853 -14.46794 -13.95757 -13.91345 -13.87467 -13.74894 -13.46023 -13.16780 -13.13628 -12.82032 -12.70906 -12.51694 -12.42038 -12.35932 -12.01285 -11.85743 -11.79905 -11.66694 -11.54699 -11.26562 -10.84652 -10.75547 -10.62828 -9.79133 -9.41408 -8.44558 -8.31061 -6.38470 0.16121 0.34021 0.52698 1.13751 1.39214 1.40553 1.49168 1.66473 2.18587 2.32823 2.72713 3.02539 3.30618 3.44376 3.66751 3.88645 3.92579 4.02902 4.13255 4.17975 4.18679 4.33884 4.42851 4.50535 4.56914 4.60770 4.64307 4.70563 4.75983 4.81760 4.82911 4.93259 4.98592 5.02012 5.07424 5.20032 5.28203 5.39177 5.40105 5.42973 5.46392 5.51494 5.70037 5.94612 6.16738 6.55206 6.67689 7.21514 7.31944 8.84793 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.010311 B = 0.005952 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.851657 B = 4703.128903 C = 5992.851580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C -0.127 4.127 4 C 0.119 3.881 5 N -0.591 5.591 6 C 0.208 3.792 7 C -0.539 4.539 8 H 0.030 0.970 9 C 0.024 3.976 10 N -0.939 5.939 11 Si 0.931 3.069 12 H -0.265 1.265 13 H -0.286 1.286 14 H -0.232 1.232 15 C 0.532 3.468 16 O -0.566 6.566 17 C -0.078 4.078 18 H 0.114 0.886 19 C -0.071 4.071 20 S -0.154 6.154 21 C -0.086 4.086 22 C -0.098 4.098 23 C -0.095 4.095 24 C -0.119 4.119 25 C -0.105 4.105 26 C -0.096 4.096 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.030 0.970 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.268 0.732 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.147 0.853 42 H 0.170 0.830 43 H 0.154 0.846 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.928 13.587 2.473 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 C -0.184 4.184 4 C -0.003 4.003 5 N -0.321 5.321 6 C 0.086 3.914 7 C -0.577 4.577 8 H 0.048 0.952 9 C -0.175 4.175 10 N -0.578 5.578 11 Si 0.754 3.246 12 H -0.190 1.190 13 H -0.211 1.211 14 H -0.154 1.154 15 C 0.320 3.680 16 O -0.446 6.446 17 C -0.100 4.100 18 H 0.132 0.868 19 C -0.219 4.219 20 S 0.088 5.912 21 C -0.199 4.199 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.139 4.139 25 C -0.124 4.124 26 C -0.101 4.101 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.165 0.835 42 H 0.188 0.812 43 H 0.171 0.829 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.770 14.729 3.239 15.101 hybrid contribution 0.032 -2.056 -0.669 2.163 sum 0.801 12.673 2.570 12.955 Atomic orbital electron populations 1.21715 0.92798 1.02388 1.02497 1.21476 0.97308 0.96274 0.97528 1.21648 0.99775 0.95789 1.01201 1.21585 0.79212 1.00662 0.98859 1.47870 1.06591 1.26948 1.50702 1.19873 0.94716 0.84885 0.91954 1.21444 1.40426 1.00835 0.94991 0.95168 1.25728 0.94542 0.94735 1.02539 1.70043 1.42819 1.07385 1.37599 0.85953 0.78487 0.80455 0.79733 1.19037 1.21136 1.15427 1.20059 0.88530 0.81564 0.77857 1.90599 1.75135 1.32226 1.46665 1.20679 0.93197 1.01928 0.94187 0.86826 1.24490 1.05944 0.93913 0.97561 1.85664 1.89182 1.12697 1.03697 1.22210 1.03438 0.98119 0.96110 1.20755 0.99462 0.98056 0.93837 1.21505 0.98240 0.97887 0.93788 1.21285 0.98066 0.93523 1.00986 1.21009 0.99368 1.00254 0.91808 1.20386 0.99667 0.95063 0.94999 0.91984 0.90979 0.92671 0.90966 0.91561 0.95030 0.93895 0.90845 0.91684 0.92993 0.93463 0.92272 0.85886 0.85881 0.83518 0.81222 0.82852 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 2 C -0.11 -3.04 3.12 -10.79 -0.03 -3.07 16 3 C -0.13 -3.80 7.98 71.98 0.57 -3.22 16 4 C 0.12 4.20 4.92 86.38 0.42 4.62 16 5 N -0.59 -23.39 2.26 -826.15 -1.87 -25.25 16 6 C 0.21 8.54 3.81 85.63 0.33 8.87 16 7 C -0.54 -27.54 8.81 25.60 0.23 -27.31 16 8 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 9 C 0.02 1.25 5.47 84.65 0.46 1.72 16 10 N -0.94 -54.24 13.96 21.45 0.30 -53.95 16 11 Si 0.93 38.20 27.47 68.60 1.88 40.08 16 12 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 13 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.23 -8.24 6.54 99.48 0.65 -7.59 16 15 C 0.53 21.78 5.64 87.66 0.49 22.27 16 16 O -0.57 -25.23 14.33 -3.02 -0.04 -25.28 16 17 C -0.08 -2.96 2.20 -11.84 -0.03 -2.99 16 18 H 0.11 4.83 6.91 -2.39 -0.02 4.81 16 19 C -0.07 -2.33 5.86 72.37 0.42 -1.90 16 20 S -0.15 -4.90 23.06 -56.49 -1.30 -6.20 16 21 C -0.09 -2.84 6.48 22.56 0.15 -2.69 16 22 C -0.10 -2.56 10.05 22.36 0.22 -2.34 16 23 C -0.09 -2.10 10.08 22.24 0.22 -1.88 16 24 C -0.12 -3.03 10.00 22.16 0.22 -2.81 16 25 C -0.10 -3.49 9.97 22.47 0.22 -3.27 16 26 C -0.10 -3.46 4.48 -19.32 -0.09 -3.55 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.06 6.96 -2.39 -0.02 1.05 16 33 H 0.04 1.40 7.92 -2.38 -0.02 1.38 16 34 H 0.07 2.58 8.12 -2.39 -0.02 2.56 16 35 H 0.06 2.43 7.29 -2.39 -0.02 2.41 16 36 H 0.05 2.00 3.55 -2.39 -0.01 2.00 16 37 H 0.05 1.84 7.45 -2.39 -0.02 1.82 16 38 H 0.27 14.54 8.31 -92.71 -0.77 13.76 16 39 H 0.12 3.92 5.99 -2.39 -0.01 3.90 16 40 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 41 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 42 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 43 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.11 3.80 8.06 -2.92 -0.02 3.77 16 Total: -1.00 -65.03 361.53 4.39 -60.64 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.93 Total: 29.91 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 4.49 Total: -19.96 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -1.57 Total: -79.20 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.04 Total: -25.28 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.88 Total: 40.08 kcal Atomic # 16 Polarization: -4.90 SS G_CDS: -1.30 Total: -6.20 kcal Total: -65.03 4.39 -60.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083774574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.813 kcal (2) G-P(sol) polarization free energy of solvation -65.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds