Wall clock time and date at job start Tue Mar 31 2020 13:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46858 * 2 1 4 4 C 1.53001 * 109.47579 * 119.99918 * 2 1 3 5 5 N 1.46502 * 109.47058 * 174.89981 * 4 2 1 6 6 C 1.46499 * 119.99943 * 274.90306 * 5 4 2 7 7 C 1.50696 * 109.47455 * 264.84298 * 6 5 4 8 8 H 1.08002 * 120.00226 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00045 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00036 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99997 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46913 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47091 * 120.00245 * 11 9 7 14 14 H 1.48499 * 109.47185 * 240.00260 * 11 9 7 15 15 C 1.34775 * 119.99945 * 94.90978 * 5 4 2 16 16 O 1.21289 * 119.99619 * 2.73440 * 15 5 4 17 17 C 1.50700 * 120.00088 * 182.73733 * 15 5 4 18 18 H 1.09003 * 109.19721 * 308.34779 * 17 15 5 19 19 C 1.54139 * 109.28223 * 67.84097 * 17 15 5 20 20 S 1.83298 * 101.07445 * 91.93548 * 19 17 15 21 21 C 1.77432 * 96.61583 * 24.83810 * 20 19 17 22 22 C 1.38814 * 130.57445 * 164.54266 * 21 20 19 23 23 C 1.38028 * 120.16245 * 180.62615 * 22 21 20 24 24 C 1.38324 * 119.29494 * 0.27357 * 23 22 21 25 25 C 1.37710 * 120.53587 * 359.30274 * 24 23 22 26 26 C 1.38891 * 108.28015 * 344.85063 * 21 20 19 27 27 H 1.09001 * 109.47389 * 299.99465 * 1 2 3 28 28 H 1.08990 * 109.47355 * 59.99931 * 1 2 3 29 29 H 1.09005 * 109.46853 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47389 * 240.00535 * 2 1 3 31 31 H 1.09008 * 109.47017 * 66.03374 * 3 2 1 32 32 H 1.08995 * 109.47239 * 186.03265 * 3 2 1 33 33 H 1.08999 * 109.47565 * 306.03934 * 3 2 1 34 34 H 1.08998 * 109.46682 * 54.90151 * 4 2 1 35 35 H 1.08998 * 109.46845 * 294.90448 * 4 2 1 36 36 H 1.09005 * 109.47108 * 24.85031 * 6 5 4 37 37 H 1.09003 * 109.46696 * 144.84346 * 6 5 4 38 38 H 0.96994 * 120.00036 * 179.97438 * 10 9 7 39 39 H 1.09002 * 111.10377 * 209.88550 * 19 17 15 40 40 H 1.08999 * 111.10069 * 333.94324 * 19 17 15 41 41 H 1.08005 * 119.92357 * 0.64632 * 22 21 20 42 42 H 1.08003 * 120.35806 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.73167 * 179.58351 * 24 23 22 44 44 H 1.07999 * 119.47360 * 180.28861 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5000 -0.8284 1.1893 6 6 4.1238 -1.9397 0.4668 7 6 4.4450 -3.0502 1.4335 8 1 4.2078 -2.9395 2.4813 9 6 5.0407 -4.2080 0.9802 10 7 5.3291 -4.3431 -0.2958 11 14 5.4383 -5.5849 2.1784 12 1 5.0165 -5.1881 3.5458 13 1 4.7135 -6.8167 1.7752 14 1 6.9003 -5.8446 2.1666 15 6 4.2690 0.0953 1.7990 16 8 3.7532 0.9873 2.4388 17 6 5.7699 0.0199 1.6857 18 1 6.1002 -0.9819 1.9603 19 6 6.1858 0.3121 0.2305 20 16 6.4562 2.1237 0.2985 21 6 6.8021 2.2136 2.0365 22 6 7.3794 3.2257 2.7910 23 6 7.5608 3.0607 4.1493 24 6 7.1669 1.8766 4.7459 25 6 6.5863 0.8760 3.9988 26 6 6.3914 1.0242 2.6245 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.7674 1.9243 0.9391 32 1 3.1245 1.4445 -0.1080 33 1 1.5910 1.9867 -0.8310 34 1 1.6041 -1.7191 1.2960 35 1 1.7532 -0.1574 2.1368 36 1 3.4372 -2.3086 -0.2953 37 1 5.0421 -1.5944 -0.0081 38 1 5.7486 -5.1575 -0.6147 39 1 7.1057 -0.2126 -0.0277 40 1 5.3849 0.0601 -0.4647 41 1 7.6871 4.1447 2.3142 42 1 8.0093 3.8463 4.7395 43 1 7.3118 1.7373 5.8071 44 1 6.2810 -0.0398 4.4830 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083774576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:10 Heat of formation + Delta-G solvation = -17.908804 kcal Electronic energy + Delta-G solvation = -25549.608239 eV Core-core repulsion = 22171.520233 eV Total energy + Delta-G solvation = -3378.088006 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.03283 -38.56027 -36.00337 -34.60085 -33.63402 -32.36413 -30.67227 -29.36243 -27.54751 -26.78235 -25.99154 -24.35615 -22.97862 -22.60342 -21.38946 -19.79735 -18.44578 -17.45481 -16.88917 -16.32742 -15.76984 -15.35352 -15.07129 -14.77831 -14.50927 -14.43916 -14.10904 -13.73958 -13.27777 -13.18804 -12.73580 -12.63178 -12.46778 -12.24710 -12.12295 -12.06580 -11.91657 -11.51281 -11.38343 -11.31050 -11.04616 -10.92514 -10.77505 -10.70457 -10.55547 -10.36003 -10.11136 -9.94706 -9.76483 -9.45664 -9.13831 -8.66163 -8.56008 -7.74121 -7.16833 -6.27914 -4.35828 1.36150 1.51871 1.82248 2.46970 3.15090 3.24378 3.26486 3.32505 3.68640 4.01554 4.26363 4.65012 4.87916 5.04713 5.06768 5.13689 5.18553 5.25195 5.30927 5.44818 5.49227 5.62932 5.63857 5.79097 5.87289 5.91639 5.99553 6.02756 6.08070 6.15731 6.18033 6.28917 6.35124 6.39966 6.43879 6.53234 6.61659 6.65734 6.72076 6.78871 7.04151 7.06495 7.46977 7.67879 7.96048 8.25398 8.70320 8.95910 9.32964 10.78323 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.009672 B = 0.005976 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.355554 B = 4684.308091 C = 6303.933628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.136 4.136 4 C 0.124 3.876 5 N -0.593 5.593 6 C 0.229 3.771 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.888 5.888 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.281 1.281 15 C 0.531 3.469 16 O -0.552 6.552 17 C -0.079 4.079 18 H 0.134 0.866 19 C -0.064 4.064 20 S -0.161 6.161 21 C -0.066 4.066 22 C -0.094 4.094 23 C -0.108 4.108 24 C -0.124 4.124 25 C -0.080 4.080 26 C -0.066 4.066 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.042 0.958 38 H 0.266 0.734 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.836 9.863 2.585 10.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.193 4.193 4 C 0.001 3.999 5 N -0.323 5.323 6 C 0.109 3.891 7 C -0.579 4.579 8 H 0.080 0.920 9 C -0.136 4.136 10 N -0.526 5.526 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.207 1.207 15 C 0.318 3.682 16 O -0.431 6.431 17 C -0.101 4.101 18 H 0.151 0.849 19 C -0.212 4.212 20 S 0.081 5.919 21 C -0.178 4.178 22 C -0.118 4.118 23 C -0.128 4.128 24 C -0.144 4.144 25 C -0.100 4.100 26 C -0.072 4.072 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.552 11.018 1.708 11.163 hybrid contribution 0.305 -2.029 1.461 2.519 sum 0.856 8.989 3.169 9.569 Atomic orbital electron populations 1.21744 0.95249 1.01508 1.01390 1.21515 0.95319 0.97018 0.99372 1.21747 1.01157 0.95370 1.01044 1.21389 0.80647 1.00399 0.97496 1.48119 1.05588 1.26136 1.52472 1.19609 0.94058 0.83173 0.92278 1.21528 1.40793 1.00531 0.95068 0.92043 1.24930 0.95192 0.98270 0.95239 1.69914 1.41632 1.27696 1.13378 0.86500 0.78209 0.81889 0.81300 1.19637 1.20763 1.20735 1.19774 0.87721 0.81536 0.79144 1.90621 1.74735 1.35616 1.42167 1.20709 0.94717 1.02032 0.92633 0.84855 1.24441 1.06592 0.92083 0.98115 1.85850 1.88138 1.12228 1.05649 1.21980 1.02342 0.97187 0.96300 1.20310 1.00088 0.97762 0.93634 1.20991 1.00280 0.97559 0.93945 1.20879 1.00045 0.93757 0.99703 1.20808 0.97685 0.99441 0.92069 1.20360 0.98188 0.93967 0.94652 0.92849 0.92938 0.92705 0.91128 0.92478 0.92826 0.93855 0.90765 0.90722 0.94344 0.94064 0.92458 0.87264 0.85854 0.85936 0.85549 0.85888 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 37.16 0.34 -1.48 16 2 C -0.11 -1.76 3.12 -90.62 -0.28 -2.05 16 3 C -0.14 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.12 2.23 4.94 -4.04 -0.02 2.21 16 5 N -0.59 -11.84 2.25 -175.06 -0.39 -12.24 16 6 C 0.23 5.06 4.60 -5.20 -0.02 5.03 16 7 C -0.54 -13.29 8.65 -34.44 -0.30 -13.58 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -23.27 13.29 55.43 0.74 -22.53 16 11 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 C 0.53 10.73 5.47 -10.99 -0.06 10.67 16 16 O -0.55 -12.19 14.62 5.55 0.08 -12.11 16 17 C -0.08 -1.46 2.15 -92.24 -0.20 -1.66 16 18 H 0.13 2.62 7.18 -51.93 -0.37 2.24 16 19 C -0.06 -1.09 5.79 37.75 0.22 -0.87 16 20 S -0.16 -2.67 23.05 -107.50 -2.48 -5.15 16 21 C -0.07 -1.11 6.48 -39.13 -0.25 -1.36 16 22 C -0.09 -1.36 10.05 -39.45 -0.40 -1.75 16 23 C -0.11 -1.37 10.08 -39.63 -0.40 -1.77 16 24 C -0.12 -1.67 10.00 -39.74 -0.40 -2.07 16 25 C -0.08 -1.29 9.97 -39.27 -0.39 -1.69 16 26 C -0.07 -1.17 4.47 -103.79 -0.46 -1.64 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.98 7.98 -51.92 -0.41 0.56 16 32 H 0.05 0.96 6.99 -51.93 -0.36 0.60 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.33 8.11 -51.93 -0.42 0.91 16 35 H 0.07 1.39 7.25 -51.93 -0.38 1.01 16 36 H 0.04 0.90 8.03 -51.93 -0.42 0.49 16 37 H 0.04 0.91 4.70 -51.93 -0.24 0.67 16 38 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 39 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 40 H 0.12 2.13 6.28 -51.93 -0.33 1.81 16 41 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 42 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 43 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 366.28 15.07 5.52 5.52 Total: -1.00 -27.82 366.28 -10.69 -38.51 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.71 Total: 5.52 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -2.42 Total: -12.30 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.34 Total: -34.77 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.48 Total: -5.15 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.82 -10.69 -38.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083774576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.597 kcal (2) G-P(sol) polarization free energy of solvation -27.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds