Wall clock time and date at job start Tue Mar 31 2020 12:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38423 * 122.54131 * 2 1 4 4 C 1.33391 * 114.92048 * 179.97438 * 3 2 1 5 5 S 1.75886 * 109.59495 * 0.24183 * 4 3 2 6 6 C 1.33390 * 122.53892 * 179.97438 * 2 1 3 7 7 C 1.50698 * 125.20275 * 359.97438 * 6 2 1 8 8 H 1.08995 * 115.55396 * 25.57903 * 7 6 2 9 9 C 1.52999 * 117.50150 * 171.25547 * 7 6 2 10 10 C 1.53002 * 117.49959 * 239.91144 * 7 6 2 11 11 H 1.09001 * 117.50372 * 144.99537 * 10 7 6 12 12 C 1.50706 * 117.49717 * 0.02562 * 10 7 6 13 13 O 1.21281 * 120.00050 * 359.97438 * 12 10 7 14 14 N 1.34772 * 120.00127 * 180.02562 * 12 10 7 15 15 C 1.46503 * 120.00165 * 179.97438 * 14 12 10 16 16 C 1.50701 * 109.46947 * 89.99787 * 15 14 12 17 17 H 1.08004 * 120.00212 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99718 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00151 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99862 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47273 * 59.99823 * 20 18 16 22 22 H 1.48503 * 109.47119 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46829 * 299.99690 * 20 18 16 24 24 C 1.46502 * 119.99936 * 359.97438 * 14 12 10 25 25 C 1.53005 * 109.47110 * 90.00309 * 24 14 12 26 26 C 1.52996 * 117.49633 * 243.74859 * 25 24 14 27 27 C 1.52995 * 117.50050 * 175.08867 * 25 24 14 28 28 H 1.09001 * 109.46714 * 90.02541 * 1 2 3 29 29 H 1.08998 * 109.46934 * 210.02664 * 1 2 3 30 30 H 1.08992 * 109.46996 * 330.02939 * 1 2 3 31 31 H 1.07995 * 122.53850 * 359.95335 * 3 2 1 32 32 H 1.08002 * 125.19887 * 179.97438 * 4 3 2 33 33 H 1.08999 * 117.50210 * 214.98143 * 9 7 6 34 34 H 1.09006 * 117.49784 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.46872 * 209.99653 * 15 14 12 36 36 H 1.08990 * 109.46935 * 329.99986 * 15 14 12 37 37 H 0.96999 * 119.99862 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.47371 * 210.00126 * 24 14 12 39 39 H 1.08999 * 109.47087 * 330.00239 * 24 14 12 40 40 H 1.09002 * 115.54613 * 29.41163 * 25 24 14 41 41 H 1.09004 * 117.50446 * 359.97438 * 26 25 24 42 42 H 1.09004 * 117.50001 * 145.02192 * 26 25 24 43 43 H 1.08998 * 117.49932 * 214.97997 * 27 25 24 44 44 H 1.08999 * 117.49793 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9900 0.0005 5 16 3.9387 -0.7306 -0.0059 6 6 2.2245 -1.1245 0.0005 7 6 1.6537 -2.5192 0.0017 8 1 0.6546 -2.6187 -0.4224 9 6 2.6274 -3.6813 -0.2042 10 6 2.0162 -3.4300 1.1764 11 1 1.2556 -4.1285 1.5252 12 6 2.9163 -2.8634 2.2441 13 8 3.3249 -1.7252 2.1517 14 7 3.2682 -3.6218 3.3012 15 6 4.1437 -3.0712 4.3388 16 6 3.3063 -2.4168 5.4073 17 1 2.2296 -2.4119 5.3222 18 6 3.9147 -1.8243 6.4934 19 7 5.2257 -1.8308 6.5973 20 14 2.8767 -1.0137 7.8182 21 1 1.9685 -2.0218 8.4215 22 1 3.7642 -0.4544 8.8694 23 1 2.0725 0.0801 7.2167 24 6 2.7751 -4.9969 3.4126 25 6 3.7585 -5.9483 2.7278 26 6 3.2584 -6.7218 1.5062 27 6 3.4802 -7.4489 2.8348 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5133 31 1 1.7966 2.1463 -0.0007 32 1 4.3078 1.7822 0.0002 33 1 2.2688 -4.5453 -0.7636 34 1 3.6809 -3.4370 -0.3410 35 1 4.7333 -3.8746 4.7805 36 1 4.8109 -2.3317 3.8963 37 1 5.6537 -1.4143 7.3617 38 1 2.6826 -5.2656 4.4649 39 1 1.8003 -5.0735 2.9310 40 1 4.8004 -5.6282 2.7290 41 1 2.2288 -6.5533 1.1905 42 1 3.9715 -6.9112 0.7038 43 1 4.3391 -8.1162 2.9060 44 1 2.5969 -7.7584 3.3934 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120515141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:39 Heat of formation + Delta-G solvation = 58.075026 kcal Electronic energy + Delta-G solvation = -25173.716758 eV Core-core repulsion = 21798.923658 eV Total energy + Delta-G solvation = -3374.793100 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.72841 -37.97310 -37.12785 -35.91503 -34.25538 -32.47334 -30.47374 -28.09897 -27.32442 -26.14164 -24.22565 -23.06864 -22.28290 -21.87745 -21.16256 -20.61847 -18.71491 -18.05654 -16.81928 -16.41427 -16.18821 -15.34239 -15.16629 -14.63745 -14.44624 -14.38819 -14.08347 -13.64440 -13.35142 -13.03966 -12.72721 -12.55131 -12.13404 -12.08641 -12.01489 -11.74422 -11.50688 -11.47725 -11.39758 -11.28474 -11.18428 -10.85925 -10.63173 -10.49843 -10.27244 -10.23566 -10.07732 -10.00079 -9.76690 -9.58646 -8.90367 -8.39785 -7.86362 -7.69309 -7.14388 -6.00868 -4.05055 1.49329 2.27937 2.61508 3.08352 3.33261 3.35889 3.37779 3.42270 3.82221 4.04628 4.18901 4.47587 4.67931 4.89323 4.95637 5.00953 5.08560 5.20920 5.32578 5.33189 5.36344 5.42538 5.57284 5.67870 5.70844 5.72053 5.82041 5.84606 5.86688 5.90379 6.01268 6.04229 6.08481 6.14633 6.19662 6.20725 6.49903 6.57032 6.89905 7.03297 7.12197 7.49159 7.61351 7.96100 8.27857 8.50036 8.94890 9.19977 9.59992 11.06976 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.008970 B = 0.005958 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.767058 B = 4698.543155 C = 6781.530915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.121 4.121 3 C -0.137 4.137 4 C -0.237 4.237 5 S 0.183 5.817 6 C -0.132 4.132 7 C -0.058 4.058 8 H 0.122 0.878 9 C -0.147 4.147 10 C -0.170 4.170 11 H 0.121 0.879 12 C 0.525 3.475 13 O -0.514 6.514 14 N -0.590 5.590 15 C 0.249 3.751 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.143 3.857 25 C -0.161 4.161 26 C -0.179 4.179 27 C -0.180 4.180 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.126 0.874 32 H 0.153 0.847 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.030 0.970 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 -5.810 -15.297 17.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C -0.169 4.169 4 C -0.373 4.373 5 S 0.452 5.548 6 C -0.250 4.250 7 C -0.078 4.078 8 H 0.140 0.860 9 C -0.185 4.185 10 C -0.192 4.192 11 H 0.138 0.862 12 C 0.311 3.689 13 O -0.391 6.391 14 N -0.321 5.321 15 C 0.130 3.870 16 C -0.562 4.562 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C 0.019 3.981 25 C -0.180 4.180 26 C -0.216 4.216 27 C -0.217 4.217 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.144 0.856 32 H 0.171 0.829 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.720 -5.953 -15.200 16.993 hybrid contribution -1.797 1.210 1.167 2.461 sum -6.517 -4.743 -14.032 16.182 Atomic orbital electron populations 1.20396 0.90822 1.02256 1.01052 1.18493 0.96635 0.91673 1.06552 1.19731 0.92874 0.98475 1.05793 1.25532 0.99694 1.00172 1.11916 1.83709 1.04961 0.98710 1.67379 1.23237 0.96630 0.95983 1.09131 1.20394 0.99237 0.86830 1.01357 0.86026 1.23053 0.99152 0.99411 0.96884 1.22534 1.02986 1.03492 0.90221 0.86157 1.19461 0.81157 0.86160 0.82161 1.90878 1.54984 1.17340 1.75892 1.48149 1.49601 1.11556 1.22757 1.19232 0.89134 0.94329 0.84262 1.21391 0.93374 1.36216 1.05214 0.92644 1.24905 0.94932 0.96002 0.98141 1.69920 1.08228 1.44821 1.30482 0.86608 0.80098 0.79843 0.81170 1.20296 1.21203 1.20236 1.21000 0.94528 0.81653 1.00964 1.22902 1.01397 0.92636 1.01095 1.22986 1.01873 1.05135 0.91613 1.22910 1.03222 0.94911 1.00695 0.92217 0.92030 0.92122 0.85582 0.82922 0.87569 0.88458 0.95193 0.93885 0.92753 0.89808 0.91587 0.87606 0.89081 0.89327 0.89132 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 9.72 36.01 0.35 -0.76 16 2 C -0.12 -1.95 5.80 -106.25 -0.62 -2.57 16 3 C -0.14 -2.20 9.98 -41.21 -0.41 -2.61 16 4 C -0.24 -3.89 11.23 29.04 0.33 -3.56 16 5 S 0.18 3.16 18.92 -107.50 -2.03 1.12 16 6 C -0.13 -2.18 4.60 -36.00 -0.17 -2.35 16 7 C -0.06 -0.80 5.47 -91.77 -0.50 -1.30 16 8 H 0.12 1.37 7.53 -51.93 -0.39 0.98 16 9 C -0.15 -1.81 9.75 -26.70 -0.26 -2.07 16 10 C -0.17 -2.53 5.29 -91.73 -0.49 -3.02 16 11 H 0.12 1.53 6.44 -51.93 -0.33 1.20 16 12 C 0.52 10.63 7.43 -10.98 -0.08 10.55 16 13 O -0.51 -12.18 10.93 5.56 0.06 -12.12 16 14 N -0.59 -12.27 2.46 -175.06 -0.43 -12.70 16 15 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 16 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 17 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 18 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 20 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.14 2.32 5.52 -4.04 -0.02 2.30 16 25 C -0.16 -2.23 6.01 -90.62 -0.54 -2.78 16 26 C -0.18 -1.94 10.18 -26.70 -0.27 -2.21 16 27 C -0.18 -2.01 10.25 -26.70 -0.27 -2.28 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.78 7.24 -51.93 -0.38 0.40 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 33 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 1.33 7.27 -51.93 -0.38 0.96 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 39 H 0.07 0.91 5.73 -51.93 -0.30 0.61 16 40 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.09 0.88 8.03 -51.93 -0.42 0.47 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 372.70 15.07 5.62 5.62 Total: -1.00 -32.70 372.70 -11.24 -43.95 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.77 Total: 2.74 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -3.41 Total: -19.72 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.31 Total: -38.76 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.06 Total: -12.12 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -2.03 Total: 1.12 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.70 -11.24 -43.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120515141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.022 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds