Wall clock time and date at job start Tue Mar 31 2020 12:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38251 * 119.99842 * 2 1 4 4 C 1.38221 * 119.99831 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99919 * 359.95370 * 4 3 2 6 6 C 1.38210 * 119.99898 * 359.79339 * 5 4 3 7 7 C 1.38215 * 120.00002 * 179.97438 * 2 1 3 8 8 C 1.50697 * 119.99859 * 0.02562 * 7 2 1 9 9 H 1.09000 * 110.91943 * 356.09107 * 8 7 2 10 10 C 1.55157 * 111.00841 * 119.99744 * 8 7 2 11 11 C 1.54325 * 102.94374 * 153.57332 * 10 8 7 12 12 H 1.09000 * 109.88274 * 97.22627 * 11 10 8 13 13 C 1.52997 * 109.88027 * 218.38782 * 11 10 8 14 14 N 1.47015 * 107.27065 * 337.80787 * 11 10 8 15 15 C 1.34782 * 125.64929 * 178.96227 * 14 11 10 16 16 O 1.21279 * 119.99514 * 359.97438 * 15 14 11 17 17 C 1.50695 * 120.00344 * 179.97438 * 15 14 11 18 18 S 1.80997 * 109.47310 * 180.02562 * 17 15 14 19 19 C 1.76201 * 100.00218 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99568 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00134 * 180.02562 * 19 18 17 22 22 N 1.31632 * 120.00262 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00059 * 359.97438 * 21 19 18 24 24 H 1.48492 * 109.47076 * 90.00149 * 23 21 19 25 25 H 1.48502 * 109.46920 * 210.00170 * 23 21 19 26 26 H 1.48498 * 109.46808 * 329.99769 * 23 21 19 27 27 C 1.47425 * 108.70882 * 358.94051 * 14 11 10 28 28 H 1.08997 * 109.47390 * 270.02250 * 1 2 3 29 29 H 1.09003 * 109.47298 * 30.02757 * 1 2 3 30 30 H 1.09003 * 109.47031 * 150.01871 * 1 2 3 31 31 H 1.07998 * 120.00349 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.99800 * 179.97438 * 4 3 2 33 33 H 1.07995 * 119.99861 * 180.02562 * 5 4 3 34 34 H 1.08000 * 120.00198 * 180.25617 * 6 5 4 35 35 H 1.08996 * 110.71539 * 271.93643 * 10 8 7 36 36 H 1.08999 * 110.72004 * 35.03097 * 10 8 7 37 37 H 1.08997 * 109.46797 * 60.00329 * 13 11 10 38 38 H 1.09003 * 109.47122 * 179.97438 * 13 11 10 39 39 H 1.08997 * 109.47254 * 299.99934 * 13 11 10 40 40 H 1.09003 * 109.46984 * 300.00232 * 17 15 14 41 41 H 1.08999 * 109.47024 * 59.99815 * 17 15 14 42 42 H 0.96990 * 120.00632 * 179.97438 * 22 21 19 43 43 H 1.08999 * 110.36633 * 265.29871 * 27 14 11 44 44 H 1.08996 * 110.37033 * 142.96251 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0020 6 6 3.5806 -1.1970 0.0073 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5020 0.0005 9 1 0.3702 -2.3312 0.0695 10 6 1.7940 -3.3461 -1.2536 11 6 1.5359 -4.7920 -0.7800 12 1 0.5443 -5.1146 -1.0974 13 6 2.6002 -5.7268 -1.3582 14 7 1.6153 -4.7913 0.6880 15 6 1.4281 -5.8616 1.4854 16 8 1.1689 -6.9420 0.9992 17 6 1.5408 -5.7160 2.9811 18 16 1.2393 -7.3180 3.7677 19 6 1.4274 -6.8678 5.4608 20 1 1.6613 -5.8471 5.7254 21 6 1.2761 -7.8250 6.4544 22 7 1.4171 -7.4888 7.7193 23 14 0.8722 -9.5905 5.9968 24 1 2.1321 -10.3517 5.8011 25 1 0.0804 -10.2155 7.0865 26 1 0.0830 -9.6076 4.7390 27 6 1.9342 -3.4259 1.1436 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5136 31 1 1.6582 2.1326 -0.0004 32 1 4.1204 2.1326 0.0001 33 1 5.3516 0.0000 0.0029 34 1 4.1205 -2.1323 0.0127 35 1 1.1383 -3.0900 -2.0857 36 1 2.8390 -3.2093 -1.5316 37 1 3.5861 -5.4081 -1.0199 38 1 2.4119 -6.7455 -1.0194 39 1 2.5610 -5.6925 -2.4470 40 1 2.5414 -5.3681 3.2379 41 1 0.8038 -4.9938 3.3324 42 1 1.3110 -8.1576 8.4136 43 1 3.0091 -3.3151 1.2867 44 1 1.4023 -3.2004 2.0678 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121784281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:08 Heat of formation + Delta-G solvation = -19.206913 kcal Electronic energy + Delta-G solvation = -24080.884618 eV Core-core repulsion = 20702.740321 eV Total energy + Delta-G solvation = -3378.144296 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.63948 -39.33872 -37.24661 -33.53670 -32.60722 -32.43136 -32.19211 -29.46342 -28.76473 -27.11315 -25.94472 -25.60362 -23.95326 -22.21252 -21.39252 -20.28355 -19.00711 -17.64928 -17.17476 -16.80851 -16.01646 -15.51008 -15.17789 -14.97919 -14.77974 -14.43562 -14.12236 -13.91197 -13.71088 -13.37961 -13.35476 -13.02183 -12.99765 -12.77353 -12.60471 -12.51385 -12.38112 -12.04910 -11.89838 -11.50848 -11.41506 -11.27523 -11.22825 -11.00226 -10.80994 -10.72460 -10.58956 -9.84769 -9.45591 -9.02850 -8.99578 -8.80675 -8.55711 -8.48535 -6.91024 -6.28102 -3.99780 1.06853 1.13230 2.70073 2.97203 3.20362 3.33868 3.44840 3.51235 3.60574 4.20036 4.34056 4.39772 4.47109 4.61331 4.64685 4.74511 4.81705 4.87117 4.97588 5.02793 5.08225 5.10950 5.20231 5.30331 5.34674 5.37285 5.40824 5.46523 5.53217 5.57672 5.61820 5.64511 5.79439 5.81147 5.87110 5.90506 6.03043 6.03788 6.22417 6.25266 6.27049 6.41181 6.48773 6.75480 7.61801 7.95006 8.42523 8.47298 9.18087 10.81177 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.017031 B = 0.003028 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.661491 B = 9244.832740 C =10132.749218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.109 4.109 7 C -0.071 4.071 8 C -0.068 4.068 9 H 0.099 0.901 10 C -0.118 4.118 11 C 0.136 3.864 12 H 0.075 0.925 13 C -0.163 4.163 14 N -0.621 5.621 15 C 0.548 3.452 16 O -0.516 6.516 17 C -0.118 4.118 18 S -0.142 6.142 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.109 3.891 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.271 0.729 43 H 0.071 0.929 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 18.199 -19.896 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.079 4.079 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.141 4.141 6 C -0.127 4.127 7 C -0.071 4.071 8 C -0.087 4.087 9 H 0.117 0.883 10 C -0.155 4.155 11 C 0.033 3.967 12 H 0.093 0.907 13 C -0.221 4.221 14 N -0.358 5.358 15 C 0.337 3.663 16 O -0.390 6.390 17 C -0.269 4.269 18 S 0.084 5.916 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.015 4.015 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.857 16.443 -20.360 26.237 hybrid contribution 0.330 0.677 0.796 1.096 sum 2.187 17.121 -19.564 26.089 Atomic orbital electron populations 1.20895 0.91253 1.02851 1.02752 1.19770 0.96047 0.92522 0.99516 1.21011 0.94285 0.97372 1.01145 1.21137 0.94321 0.98072 1.00246 1.21122 0.99912 0.92455 1.00650 1.21027 0.93592 0.98306 0.99790 1.19413 0.93444 0.93407 1.00835 1.21418 1.00525 0.91242 0.95512 0.88256 1.22840 1.02866 0.92753 0.97083 1.21506 0.99722 0.95177 0.80333 0.90686 1.22135 0.98328 1.01310 1.00288 1.48554 1.72120 1.08826 1.06269 1.19947 0.75735 0.82559 0.88102 1.90687 1.46756 1.25555 1.75998 1.23270 1.05537 1.05041 0.93041 1.84766 1.93142 1.09130 1.04523 1.22310 1.55769 1.00164 0.88556 0.89420 1.24708 0.93461 0.99088 0.94025 1.69935 1.47565 1.35029 0.99205 0.86737 0.80263 0.84443 0.80431 1.19210 1.19950 1.15901 1.22387 1.00716 0.80877 0.97471 0.90820 0.91556 0.91036 0.86153 0.86217 0.86103 0.85876 0.90006 0.90118 0.92603 0.90849 0.91994 0.88680 0.88628 0.91946 0.91047 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 9.36 36.00 0.34 -0.49 16 2 C -0.08 -0.66 5.88 -104.63 -0.62 -1.28 16 3 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 4 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 5 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 6 C -0.11 -0.95 8.31 -39.58 -0.33 -1.28 16 7 C -0.07 -0.62 5.00 -104.63 -0.52 -1.15 16 8 C -0.07 -0.61 2.98 -89.62 -0.27 -0.87 16 9 H 0.10 0.85 5.68 -51.93 -0.30 0.55 16 10 C -0.12 -0.99 5.89 -24.90 -0.15 -1.14 16 11 C 0.14 1.58 3.46 -66.96 -0.23 1.34 16 12 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 13 C -0.16 -1.89 9.10 37.16 0.34 -1.56 16 14 N -0.62 -8.67 3.06 -163.02 -0.50 -9.17 16 15 C 0.55 10.17 7.66 -10.99 -0.08 10.09 16 16 O -0.52 -11.29 14.91 5.56 0.08 -11.21 16 17 C -0.12 -2.37 5.16 36.00 0.19 -2.19 16 18 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 19 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 20 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 22 N -0.88 -26.73 13.97 55.49 0.78 -25.95 16 23 Si 0.86 21.94 27.74 -169.99 -4.72 17.22 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 27 C 0.11 1.21 6.09 -2.52 -0.02 1.19 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.07 0.46 6.18 -51.93 -0.32 0.14 16 31 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.12 0.99 7.00 -52.49 -0.37 0.63 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.65 6.94 -51.93 -0.36 0.29 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 1.08 6.90 -51.93 -0.36 0.72 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 1.80 8.14 -51.91 -0.42 1.38 16 41 H 0.10 1.80 7.85 -51.92 -0.41 1.39 16 42 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.07 0.76 6.62 -51.93 -0.34 0.41 16 44 H 0.08 0.92 7.48 -51.93 -0.39 0.53 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -33.70 365.51 -9.80 -43.50 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.64 Total: -0.77 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -2.32 Total: -13.49 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.28 Total: -35.12 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.72 Total: 17.22 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.70 -9.80 -43.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121784281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.295 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds