Wall clock time and date at job start Tue Mar 31 2020 12:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 110.05485 * 2 1 4 4 C 1.53876 * 110.03247 * 238.58631 * 2 1 3 5 5 C 1.54461 * 106.68652 * 240.87153 * 4 2 1 6 6 C 1.54890 * 104.09860 * 23.34188 * 5 4 2 7 7 H 1.09002 * 110.75384 * 80.71109 * 6 5 4 8 8 N 1.46503 * 110.75765 * 203.89462 * 6 5 4 9 9 C 1.34783 * 119.99789 * 271.06970 * 8 6 5 10 10 O 1.21605 * 120.00126 * 359.97438 * 9 8 6 11 11 C 1.47423 * 119.99583 * 179.72556 * 9 8 6 12 12 C 1.39680 * 120.21941 * 359.71271 * 11 9 8 13 13 C 1.37810 * 119.93984 * 179.76760 * 12 11 9 14 14 C 1.38662 * 120.37949 * 0.51769 * 13 12 11 15 15 C 1.37912 * 120.44071 * 359.74408 * 14 13 12 16 16 C 1.39111 * 120.04499 * 359.97438 * 15 14 13 17 17 S 1.76210 * 120.18468 * 179.97438 * 16 15 14 18 18 C 1.76199 * 99.99717 * 6.85786 * 17 16 15 19 19 H 1.07999 * 120.00615 * 5.65805 * 18 17 16 20 20 C 1.38808 * 119.99431 * 185.65509 * 18 17 16 21 21 N 1.31555 * 119.99710 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00457 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46774 * 90.00120 * 22 20 18 24 24 H 1.48500 * 109.47289 * 210.00241 * 22 20 18 25 25 H 1.48498 * 109.46889 * 330.00516 * 22 20 18 26 26 C 1.54263 * 110.03539 * 121.41792 * 2 1 3 27 27 H 1.08998 * 109.46758 * 298.57824 * 1 2 3 28 28 H 1.08995 * 109.47191 * 58.57946 * 1 2 3 29 29 H 1.08999 * 109.46697 * 178.58397 * 1 2 3 30 30 H 1.08995 * 109.47174 * 181.41291 * 3 2 1 31 31 H 1.08998 * 109.47532 * 301.41950 * 3 2 1 32 32 H 1.09002 * 109.47087 * 61.41571 * 3 2 1 33 33 H 1.08999 * 110.02959 * 359.97438 * 4 2 1 34 34 H 1.09000 * 110.03499 * 121.37838 * 4 2 1 35 35 H 1.08998 * 110.40720 * 264.76167 * 5 4 2 36 36 H 1.08996 * 110.66121 * 142.04909 * 5 4 2 37 37 H 0.96994 * 120.00220 * 91.05871 * 8 6 5 38 38 H 1.07994 * 120.02637 * 0.02924 * 12 11 9 39 39 H 1.08000 * 119.80914 * 180.25880 * 13 12 11 40 40 H 1.07994 * 119.77634 * 179.75927 * 14 13 12 41 41 H 1.07997 * 119.97568 * 179.97438 * 15 14 13 42 42 H 0.97003 * 119.99802 * 179.97438 * 21 20 18 43 43 H 1.09001 * 110.48375 * 337.00228 * 26 2 1 44 44 H 1.08994 * 110.48947 * 214.35291 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0571 -0.7535 -1.2338 5 6 2.8857 -1.9451 -0.7052 6 6 2.3281 -2.1901 0.7190 7 1 1.4037 -2.7662 0.6780 8 7 3.3221 -2.8661 1.5565 9 6 3.3766 -4.2126 1.5838 10 8 2.6005 -4.8662 0.9136 11 6 4.3808 -4.8927 2.4219 12 6 5.2817 -4.1462 3.1849 13 6 6.2149 -4.7879 3.9701 14 6 6.2729 -6.1730 3.9999 15 6 5.3945 -6.9254 3.2486 16 6 4.4415 -6.2964 2.4542 17 16 3.3178 -7.2541 1.4924 18 6 3.7157 -8.8687 2.0750 19 1 4.4136 -8.9921 2.8899 20 6 3.1319 -9.9822 1.4866 21 7 3.4285 -11.1876 1.9219 22 14 1.9241 -9.7689 0.0777 23 1 2.6605 -9.7821 -1.2118 24 1 0.9396 -10.8805 0.0970 25 1 1.2121 -8.4744 0.2278 26 6 2.0585 -0.7555 1.2368 27 1 -0.3633 0.4916 0.9025 28 1 -0.3633 0.5357 -0.8769 29 1 -0.3633 -1.0274 -0.0254 30 1 3.1443 1.4262 -0.0253 31 1 1.6761 1.9623 -0.8769 32 1 1.7174 1.9471 0.9024 33 1 1.2229 -1.1195 -1.8322 34 1 2.6860 -0.0950 -1.8330 35 1 3.9428 -1.6831 -0.6611 36 1 2.7356 -2.8253 -1.3303 37 1 3.9410 -2.3447 2.0912 38 1 5.2442 -3.0671 3.1627 39 1 6.9077 -4.2087 4.5624 40 1 7.0106 -6.6658 4.6156 41 1 5.4467 -8.0038 3.2772 42 1 3.0203 -11.9657 1.5110 43 1 1.3062 -0.7697 2.0254 44 1 2.9811 -0.3001 1.5966 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162851613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:19 Heat of formation + Delta-G solvation = -29.299108 kcal Electronic energy + Delta-G solvation = -24176.304117 eV Core-core repulsion = 20797.722191 eV Total energy + Delta-G solvation = -3378.581927 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.02998 -38.81795 -37.39983 -34.33197 -32.70544 -31.58987 -30.37499 -30.27865 -28.37928 -27.55485 -25.89880 -24.57113 -23.22216 -22.05462 -20.83161 -20.20229 -18.91362 -18.25653 -17.14235 -16.28838 -15.87090 -15.40076 -15.11016 -14.73891 -14.45158 -14.23099 -13.89215 -13.86064 -13.66140 -13.55817 -13.36151 -13.14218 -12.63181 -12.36304 -12.14362 -11.88621 -11.87301 -11.69060 -11.36798 -11.32014 -11.18065 -10.99615 -10.89836 -10.75208 -10.70663 -10.54637 -10.49373 -9.77265 -9.68556 -9.45113 -8.84696 -8.80399 -8.40774 -8.20969 -6.79274 -6.47432 -4.18387 1.42933 1.92167 2.87602 3.21059 3.37159 3.40812 3.41963 3.49456 4.15754 4.32128 4.39038 4.44030 4.57005 4.65589 4.95746 5.01521 5.13349 5.17760 5.21864 5.24282 5.29227 5.31443 5.41413 5.44538 5.52975 5.56352 5.68884 5.72725 5.75128 5.82993 5.87567 5.99046 6.01360 6.06138 6.16230 6.22464 6.26531 6.27597 6.50746 6.72612 6.78566 6.97442 7.06380 7.46120 7.75989 7.83970 8.35035 8.69690 8.96836 10.59848 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.003759 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.679214 B = 7447.670726 C = 9079.661321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.138 4.138 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.144 3.856 7 H 0.095 0.905 8 N -0.730 5.730 9 C 0.555 3.445 10 O -0.512 6.512 11 C -0.173 4.173 12 C -0.065 4.065 13 C -0.177 4.177 14 C -0.077 4.077 15 C -0.145 4.145 16 C -0.030 4.030 17 S 0.086 5.914 18 C -0.580 4.580 19 H 0.106 0.894 20 C 0.103 3.897 21 N -0.863 5.863 22 Si 0.849 3.151 23 H -0.263 1.263 24 H -0.269 1.269 25 H -0.234 1.234 26 C -0.121 4.121 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.395 0.605 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.146 0.854 42 H 0.274 0.726 43 H 0.072 0.928 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.195 23.020 -1.344 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 C -0.195 4.195 4 C -0.152 4.152 5 C -0.175 4.175 6 C 0.039 3.961 7 H 0.113 0.887 8 N -0.383 5.383 9 C 0.344 3.656 10 O -0.389 6.389 11 C -0.187 4.187 12 C -0.085 4.085 13 C -0.201 4.201 14 C -0.099 4.099 15 C -0.170 4.170 16 C -0.149 4.149 17 S 0.347 5.653 18 C -0.726 4.726 19 H 0.123 0.877 20 C -0.108 4.108 21 N -0.497 5.497 22 Si 0.673 3.327 23 H -0.188 1.188 24 H -0.194 1.194 25 H -0.158 1.158 26 C -0.159 4.159 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.230 0.770 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.164 0.836 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.843 22.370 -2.855 22.627 hybrid contribution 0.923 -0.319 0.728 1.218 sum -0.920 22.052 -2.127 22.173 Atomic orbital electron populations 1.21938 0.94200 1.02099 1.01536 1.21097 0.95656 0.95175 0.94884 1.21907 1.00809 0.95203 1.01583 1.22283 0.99606 0.96580 0.96756 1.22787 0.99641 0.98243 0.96788 1.21855 0.92510 0.92190 0.89503 0.88747 1.45845 1.37552 1.06426 1.48507 1.18291 0.83877 0.81620 0.81815 1.90753 1.41523 1.64004 1.42646 1.19201 1.01576 0.92346 1.05582 1.20898 0.94388 0.97973 0.95279 1.20721 1.01527 0.94574 1.03308 1.21141 0.97579 0.93860 0.97292 1.21579 0.95620 1.01673 0.98078 1.22528 0.98243 0.95158 0.98973 1.84127 1.37914 0.98547 1.44704 1.23538 1.33469 0.91881 1.23684 0.87680 1.24802 0.95442 0.94148 0.96376 1.69912 1.41229 0.97931 1.40620 0.86876 0.82070 0.80794 0.82927 1.18753 1.19386 1.15781 1.22738 1.01400 0.94374 0.97419 0.92714 0.92686 0.92252 0.92579 0.92704 0.92749 0.91531 0.91647 0.91479 0.90954 0.77045 0.86970 0.86806 0.86628 0.83633 0.91540 0.90971 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.15 37.16 0.30 -0.80 16 2 C -0.07 -0.55 0.94 -153.39 -0.14 -0.69 16 3 C -0.14 -0.93 8.15 37.16 0.30 -0.63 16 4 C -0.11 -1.03 6.11 -25.51 -0.16 -1.18 16 5 C -0.14 -1.54 6.53 -24.97 -0.16 -1.70 16 6 C 0.14 1.74 3.21 -65.94 -0.21 1.53 16 7 H 0.09 1.35 7.62 -51.93 -0.40 0.95 16 8 N -0.73 -9.81 5.14 -52.95 -0.27 -10.08 16 9 C 0.55 10.23 7.75 -12.52 -0.10 10.13 16 10 O -0.51 -11.34 13.46 5.27 0.07 -11.27 16 11 C -0.17 -3.28 5.89 -104.75 -0.62 -3.90 16 12 C -0.07 -0.98 9.53 -39.20 -0.37 -1.36 16 13 C -0.18 -2.63 10.02 -39.58 -0.40 -3.03 16 14 C -0.08 -1.30 10.03 -39.54 -0.40 -1.69 16 15 C -0.14 -3.04 9.22 -39.38 -0.36 -3.40 16 16 C -0.03 -0.67 6.15 -38.39 -0.24 -0.91 16 17 S 0.09 2.20 16.53 -107.50 -1.78 0.43 16 18 C -0.58 -16.37 9.54 30.94 0.30 -16.08 16 19 H 0.11 3.06 5.21 -52.49 -0.27 2.78 16 20 C 0.10 2.94 5.50 -17.46 -0.10 2.84 16 21 N -0.86 -25.30 13.96 55.49 0.77 -24.52 16 22 Si 0.85 21.04 27.74 -169.99 -4.71 16.33 16 23 H -0.26 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.23 -5.81 6.74 56.52 0.38 -5.43 16 26 C -0.12 -1.08 5.52 -25.07 -0.14 -1.21 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.61 7.67 -51.93 -0.40 0.21 16 34 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.39 4.18 6.57 -40.82 -0.27 3.91 16 38 H 0.11 1.24 6.40 -52.49 -0.34 0.91 16 39 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 40 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 41 H 0.15 3.32 5.03 -52.49 -0.26 3.06 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.07 0.63 7.84 -51.93 -0.41 0.23 16 44 H 0.07 0.56 7.73 -51.93 -0.40 0.16 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -31.46 361.35 -9.49 -40.95 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.53 Total: 4.80 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -2.49 Total: -22.09 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.50 Total: -34.60 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.07 Total: -11.27 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.71 Total: 16.33 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.78 Total: 0.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.46 -9.49 -40.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162851613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.654 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds