Wall clock time and date at job start Tue Mar 31 2020 12:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 110.05485 * 2 1 4 4 C 1.53876 * 110.03247 * 238.58631 * 2 1 3 5 5 C 1.54461 * 106.68652 * 240.87153 * 4 2 1 6 6 C 1.54890 * 104.09860 * 23.34188 * 5 4 2 7 7 H 1.09002 * 110.75384 * 80.71109 * 6 5 4 8 8 N 1.46503 * 110.75765 * 203.89462 * 6 5 4 9 9 C 1.34783 * 119.99789 * 271.06970 * 8 6 5 10 10 O 1.21605 * 120.00126 * 359.97438 * 9 8 6 11 11 C 1.47423 * 119.99583 * 179.72556 * 9 8 6 12 12 C 1.39680 * 120.21941 * 359.71271 * 11 9 8 13 13 C 1.37810 * 119.93984 * 179.76760 * 12 11 9 14 14 C 1.38662 * 120.37949 * 0.51769 * 13 12 11 15 15 C 1.37912 * 120.44071 * 359.74408 * 14 13 12 16 16 C 1.39111 * 120.04499 * 359.97438 * 15 14 13 17 17 S 1.76210 * 120.18468 * 179.97438 * 16 15 14 18 18 C 1.76199 * 99.99717 * 6.85786 * 17 16 15 19 19 H 1.07999 * 120.00615 * 5.65805 * 18 17 16 20 20 C 1.38808 * 119.99431 * 185.65509 * 18 17 16 21 21 N 1.31555 * 119.99710 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00457 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46774 * 90.00120 * 22 20 18 24 24 H 1.48500 * 109.47289 * 210.00241 * 22 20 18 25 25 H 1.48498 * 109.46889 * 330.00516 * 22 20 18 26 26 C 1.54263 * 110.03539 * 121.41792 * 2 1 3 27 27 H 1.08998 * 109.46758 * 298.57824 * 1 2 3 28 28 H 1.08995 * 109.47191 * 58.57946 * 1 2 3 29 29 H 1.08999 * 109.46697 * 178.58397 * 1 2 3 30 30 H 1.08995 * 109.47174 * 181.41291 * 3 2 1 31 31 H 1.08998 * 109.47532 * 301.41950 * 3 2 1 32 32 H 1.09002 * 109.47087 * 61.41571 * 3 2 1 33 33 H 1.08999 * 110.02959 * 359.97438 * 4 2 1 34 34 H 1.09000 * 110.03499 * 121.37838 * 4 2 1 35 35 H 1.08998 * 110.40720 * 264.76167 * 5 4 2 36 36 H 1.08996 * 110.66121 * 142.04909 * 5 4 2 37 37 H 0.96994 * 120.00220 * 91.05871 * 8 6 5 38 38 H 1.07994 * 120.02637 * 0.02924 * 12 11 9 39 39 H 1.08000 * 119.80914 * 180.25880 * 13 12 11 40 40 H 1.07994 * 119.77634 * 179.75927 * 14 13 12 41 41 H 1.07997 * 119.97568 * 179.97438 * 15 14 13 42 42 H 0.97003 * 119.99802 * 179.97438 * 21 20 18 43 43 H 1.09001 * 110.48375 * 337.00228 * 26 2 1 44 44 H 1.08994 * 110.48947 * 214.35291 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0571 -0.7535 -1.2338 5 6 2.8857 -1.9451 -0.7052 6 6 2.3281 -2.1901 0.7190 7 1 1.4037 -2.7662 0.6780 8 7 3.3221 -2.8661 1.5565 9 6 3.3766 -4.2126 1.5838 10 8 2.6005 -4.8662 0.9136 11 6 4.3808 -4.8927 2.4219 12 6 5.2817 -4.1462 3.1849 13 6 6.2149 -4.7879 3.9701 14 6 6.2729 -6.1730 3.9999 15 6 5.3945 -6.9254 3.2486 16 6 4.4415 -6.2964 2.4542 17 16 3.3178 -7.2541 1.4924 18 6 3.7157 -8.8687 2.0750 19 1 4.4136 -8.9921 2.8899 20 6 3.1319 -9.9822 1.4866 21 7 3.4285 -11.1876 1.9219 22 14 1.9241 -9.7689 0.0777 23 1 2.6605 -9.7821 -1.2118 24 1 0.9396 -10.8805 0.0970 25 1 1.2121 -8.4744 0.2278 26 6 2.0585 -0.7555 1.2368 27 1 -0.3633 0.4916 0.9025 28 1 -0.3633 0.5357 -0.8769 29 1 -0.3633 -1.0274 -0.0254 30 1 3.1443 1.4262 -0.0253 31 1 1.6761 1.9623 -0.8769 32 1 1.7174 1.9471 0.9024 33 1 1.2229 -1.1195 -1.8322 34 1 2.6860 -0.0950 -1.8330 35 1 3.9428 -1.6831 -0.6611 36 1 2.7356 -2.8253 -1.3303 37 1 3.9410 -2.3447 2.0912 38 1 5.2442 -3.0671 3.1627 39 1 6.9077 -4.2087 4.5624 40 1 7.0106 -6.6658 4.6156 41 1 5.4467 -8.0038 3.2772 42 1 3.0203 -11.9657 1.5110 43 1 1.3062 -0.7697 2.0254 44 1 2.9811 -0.3001 1.5966 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162851613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:19 Heat of formation + Delta-G solvation = -48.341338 kcal Electronic energy + Delta-G solvation = -24177.129850 eV Core-core repulsion = 20797.722191 eV Total energy + Delta-G solvation = -3379.407660 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.25863 -39.89049 -38.79519 -35.51675 -34.82950 -32.75102 -31.85448 -31.42860 -29.26152 -28.11341 -27.99538 -25.53406 -24.45925 -23.48802 -22.03780 -21.44567 -20.11170 -19.52276 -18.71899 -17.62484 -17.28078 -17.09463 -16.25909 -16.13284 -15.78376 -15.50271 -15.32667 -15.12508 -14.67431 -14.60773 -14.33584 -14.11140 -14.05230 -13.67706 -13.67290 -13.14013 -13.08302 -12.91425 -12.78643 -12.51047 -12.34574 -12.28272 -12.23326 -11.75689 -11.52007 -11.46046 -11.40634 -11.38925 -11.35060 -11.28364 -10.58574 -10.11802 -10.02716 -9.79106 -8.67993 -8.60804 -6.31728 -0.03163 0.46826 0.99268 1.21502 1.39046 1.62620 1.98033 2.13801 2.21191 2.66838 2.76730 2.97707 3.57642 3.62960 3.84998 3.93203 3.97206 4.23097 4.35755 4.36219 4.39237 4.50533 4.55788 4.58108 4.59481 4.63148 4.78626 4.87663 4.92850 4.97579 5.04370 5.06234 5.14226 5.17435 5.19893 5.28544 5.35454 5.43429 5.45107 5.48943 5.59751 5.61069 5.63377 5.66784 6.04873 6.15546 6.64364 6.83260 7.34790 8.50517 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.003759 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.679214 B = 7447.670726 C = 9079.661321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C -0.134 4.134 4 C -0.110 4.110 5 C -0.134 4.134 6 C 0.138 3.862 7 H 0.064 0.936 8 N -0.705 5.705 9 C 0.549 3.451 10 O -0.557 6.557 11 C -0.175 4.175 12 C -0.053 4.053 13 C -0.147 4.147 14 C -0.072 4.072 15 C -0.171 4.171 16 C -0.055 4.055 17 S 0.021 5.979 18 C -0.585 4.585 19 H 0.080 0.920 20 C 0.054 3.946 21 N -0.907 5.907 22 Si 0.906 3.094 23 H -0.258 1.258 24 H -0.252 1.252 25 H -0.242 1.242 26 C -0.111 4.111 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.413 0.587 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.147 0.853 41 H 0.112 0.888 42 H 0.279 0.721 43 H 0.075 0.925 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 28.260 -0.232 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 C -0.191 4.191 4 C -0.148 4.148 5 C -0.173 4.173 6 C 0.033 3.967 7 H 0.082 0.918 8 N -0.358 5.358 9 C 0.338 3.662 10 O -0.437 6.437 11 C -0.187 4.187 12 C -0.073 4.073 13 C -0.169 4.169 14 C -0.093 4.093 15 C -0.196 4.196 16 C -0.172 4.172 17 S 0.276 5.724 18 C -0.732 4.732 19 H 0.098 0.902 20 C -0.152 4.152 21 N -0.544 5.544 22 Si 0.727 3.273 23 H -0.182 1.182 24 H -0.175 1.175 25 H -0.166 1.166 26 C -0.148 4.148 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.252 0.748 38 H 0.185 0.815 39 H 0.188 0.812 40 H 0.164 0.836 41 H 0.129 0.871 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.197 27.712 -1.691 27.764 hybrid contribution 0.653 -1.590 0.568 1.811 sum 0.456 26.121 -1.123 26.149 Atomic orbital electron populations 1.21951 0.94250 1.01286 1.02403 1.21090 0.95644 0.96040 0.93730 1.21876 1.01148 0.93767 1.02332 1.22272 0.99268 0.95850 0.97404 1.22736 1.00611 0.98114 0.95815 1.21978 0.90942 0.93590 0.90204 0.91788 1.45642 1.37524 1.04711 1.47886 1.18425 0.83346 0.83114 0.81354 1.90739 1.43142 1.65334 1.44481 1.19576 1.02263 0.91200 1.05693 1.21495 0.92303 1.00489 0.93027 1.21396 1.00619 0.93619 1.01292 1.21546 0.96546 0.95197 0.95993 1.21462 0.97414 1.00640 1.00063 1.22527 0.98610 0.96358 0.99680 1.84059 1.42239 0.97902 1.48200 1.23653 1.32719 0.93670 1.23114 0.90245 1.25567 0.97098 0.93898 0.98670 1.69985 1.43242 0.98644 1.42495 0.86036 0.80387 0.80655 0.80216 1.18232 1.17540 1.16586 1.22720 1.02633 0.91691 0.97793 0.91797 0.91930 0.93935 0.91954 0.92181 0.91894 0.92214 0.90121 0.90509 0.94084 0.74821 0.81522 0.81240 0.83554 0.87056 0.91103 0.90619 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.15 71.98 0.59 -1.36 16 2 C -0.06 -0.86 0.94 -51.46 -0.05 -0.90 16 3 C -0.13 -1.27 8.15 71.98 0.59 -0.68 16 4 C -0.11 -1.78 6.11 31.39 0.19 -1.58 16 5 C -0.13 -2.90 6.53 31.74 0.21 -2.69 16 6 C 0.14 3.12 3.21 46.28 0.15 3.27 16 7 H 0.06 1.88 7.62 -2.39 -0.02 1.87 16 8 N -0.70 -17.16 5.14 -439.68 -2.26 -19.42 16 9 C 0.55 19.93 7.75 86.66 0.67 20.60 16 10 O -0.56 -25.70 13.46 -4.05 -0.05 -25.76 16 11 C -0.17 -6.38 5.89 -19.95 -0.12 -6.49 16 12 C -0.05 -1.32 9.53 22.52 0.21 -1.11 16 13 C -0.15 -3.44 10.02 22.27 0.22 -3.22 16 14 C -0.07 -2.22 10.03 22.29 0.22 -1.99 16 15 C -0.17 -7.34 9.22 22.40 0.21 -7.14 16 16 C -0.05 -2.51 6.15 23.04 0.14 -2.37 16 17 S 0.02 1.12 16.53 -56.49 -0.93 0.19 16 18 C -0.59 -35.67 9.54 67.96 0.65 -35.02 16 19 H 0.08 5.08 5.21 -2.91 -0.02 5.06 16 20 C 0.05 3.27 5.50 84.87 0.47 3.74 16 21 N -0.91 -56.31 13.96 21.65 0.30 -56.00 16 22 Si 0.91 46.09 27.74 68.60 1.90 47.99 16 23 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.25 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.24 -12.49 6.74 99.48 0.67 -11.82 16 26 C -0.11 -1.59 5.52 31.67 0.17 -1.42 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 1.05 7.67 -2.39 -0.02 1.03 16 34 H 0.08 1.08 7.67 -2.39 -0.02 1.06 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.41 6.67 6.57 -92.71 -0.61 6.06 16 38 H 0.17 2.36 6.40 -2.91 -0.02 2.34 16 39 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 40 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 41 H 0.11 5.53 5.03 -2.91 -0.01 5.52 16 42 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 43 H 0.08 1.09 7.84 -2.39 -0.02 1.07 16 44 H 0.09 0.97 7.73 -2.39 -0.02 0.95 16 Total: -1.00 -77.88 361.35 3.84 -74.04 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.36 Total: 17.33 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 4.53 Total: -38.37 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -1.96 Total: -75.42 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.05 Total: -25.76 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.90 Total: 47.99 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -0.93 Total: 0.19 kcal Total: -77.88 3.84 -74.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162851613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.700 kcal (2) G-P(sol) polarization free energy of solvation -77.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds