Wall clock time and date at job start Tue Mar 31 2020 12:00:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38258 * 120.00023 * 2 1
4 4 C 1.38213 * 120.00155 * 180.34221 * 3 2 1
5 5 C 1.38255 * 119.99776 * 359.91069 * 4 3 2
6 6 C 1.38213 * 120.00160 * 0.04055 * 5 4 3
7 7 C 1.38209 * 119.99863 * 180.26872 * 2 1 3
8 8 C 1.50697 * 120.00160 * 359.70923 * 7 2 1
9 9 C 1.53046 * 109.45720 * 234.69021 * 8 7 2
10 10 C 1.53191 * 109.31105 * 178.59787 * 9 8 7
11 11 N 1.46929 * 108.76484 * 54.65243 * 10 9 8
12 12 C 1.34778 * 120.62867 * 126.40690 * 11 10 9
13 13 O 1.21283 * 119.99928 * 179.97438 * 12 11 10
14 14 C 1.50698 * 120.00250 * 359.97438 * 12 11 10
15 15 S 1.80995 * 109.47338 * 180.02562 * 14 12 11
16 16 C 1.76203 * 100.00177 * 179.97438 * 15 14 12
17 17 H 1.08000 * 119.99773 * 0.02562 * 16 15 14
18 18 C 1.38794 * 119.99932 * 179.97438 * 16 15 14
19 19 N 1.31633 * 120.00397 * 0.02562 * 18 16 15
20 20 Si 1.86806 * 119.99720 * 180.02562 * 18 16 15
21 21 H 1.48494 * 109.47327 * 0.02562 * 20 18 16
22 22 H 1.48497 * 109.46802 * 120.00454 * 20 18 16
23 23 H 1.48496 * 109.47091 * 240.00000 * 20 18 16
24 24 C 1.46927 * 118.74063 * 306.38074 * 11 10 9
25 25 C 1.53037 * 109.46439 * 114.63429 * 8 7 2
26 26 H 1.09000 * 109.47140 * 263.96837 * 1 2 3
27 27 H 1.09003 * 109.46667 * 23.96470 * 1 2 3
28 28 H 1.08999 * 109.47228 * 143.96313 * 1 2 3
29 29 H 1.08001 * 119.99941 * 0.27589 * 3 2 1
30 30 H 1.07995 * 120.00392 * 179.97438 * 4 3 2
31 31 H 1.08001 * 119.99869 * 180.02562 * 5 4 3
32 32 H 1.07997 * 120.00353 * 180.02562 * 6 5 4
33 33 H 1.09000 * 109.45988 * 354.65849 * 8 7 2
34 34 H 1.08995 * 109.49330 * 298.55970 * 9 8 7
35 35 H 1.08997 * 109.49861 * 58.65825 * 9 8 7
36 36 H 1.09002 * 109.59757 * 294.86713 * 10 9 8
37 37 H 1.08996 * 109.70576 * 174.50311 * 10 9 8
38 38 H 1.09001 * 109.46745 * 300.00279 * 14 12 11
39 39 H 1.08998 * 109.46933 * 59.99647 * 14 12 11
40 40 H 0.96996 * 120.00143 * 180.02562 * 19 18 16
41 41 H 1.08993 * 109.58762 * 293.82334 * 24 11 10
42 42 H 1.08999 * 109.58708 * 173.39324 * 24 11 10
43 43 H 1.08998 * 109.49328 * 301.33396 * 25 8 7
44 44 H 1.08998 * 109.49689 * 61.43388 * 25 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1983 1.1974 0.0000
4 6 3.5804 1.1974 -0.0071
5 6 4.2717 0.0001 -0.0124
6 6 3.5806 -1.1969 -0.0114
7 6 2.1980 -1.1969 -0.0056
8 6 1.4446 -2.5020 -0.0051
9 6 1.9172 -3.3631 1.1686
10 6 1.1247 -4.6739 1.1866
11 7 1.2519 -5.3213 -0.1262
12 6 1.6739 -6.5975 -0.2245
13 8 1.7743 -7.1208 -1.3140
14 6 2.0209 -7.3744 1.0193
15 16 2.5505 -9.0431 0.5604
16 6 2.8851 -9.7081 2.1575
17 1 2.7406 -9.0986 3.0373
18 6 3.3333 -11.0155 2.2849
19 7 3.5089 -11.7586 1.2126
20 14 3.6872 -11.7206 3.9781
21 1 3.4116 -10.6900 5.0111
22 1 2.8186 -12.9018 4.2138
23 1 5.1123 -12.1309 4.0555
24 6 0.9099 -4.5511 -1.3298
25 6 1.7047 -3.2415 -1.3195
26 1 -0.3633 -0.1080 1.0220
27 1 -0.3633 0.9391 -0.4174
28 1 -0.3633 -0.8310 -0.6046
29 1 1.6583 2.1327 0.0045
30 1 4.1205 2.1326 -0.0076
31 1 5.3517 0.0001 -0.0176
32 1 4.1206 -2.1322 -0.0151
33 1 0.3773 -2.3051 0.0957
34 1 2.9790 -3.5813 1.0552
35 1 1.7533 -2.8262 2.1029
36 1 0.0747 -4.4636 1.3900
37 1 1.5216 -5.3328 1.9589
38 1 2.8289 -6.8699 1.5491
39 1 1.1453 -7.4355 1.6656
40 1 3.8217 -12.6723 1.3017
41 1 -0.1575 -4.3308 -1.3316
42 1 1.1676 -5.1278 -2.2181
43 1 1.3895 -2.6181 -2.1561
44 1 2.7686 -3.4609 -1.4091
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000170955369.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:00:48
Heat of formation + Delta-G solvation = -25.597541 kcal
Electronic energy + Delta-G solvation = -23904.107090 eV
Core-core repulsion = 20525.685676 eV
Total energy + Delta-G solvation = -3378.421415 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 319.135 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.49080 -39.35559 -37.08847 -33.92724 -32.88720 -32.42494 -31.58323 -30.24488
-28.81310 -27.18738 -25.54697 -25.10791 -23.31294 -22.73966 -21.28186 -20.38845
-18.93131 -17.69157 -16.96432 -16.49249 -15.75723 -15.59759 -15.24788 -15.06997
-14.80257 -14.44739 -14.19288 -14.00554 -13.83068 -13.69129 -13.34064 -13.09680
-12.95748 -12.69032 -12.60136 -12.41002 -12.15861 -12.08856 -11.79762 -11.44999
-11.35369 -11.07053 -11.02016 -10.88310 -10.78019 -10.74202 -10.51800 -9.78876
-9.33290 -9.07144 -9.00946 -8.77701 -8.49717 -8.21148 -6.49519 -6.21356
-3.91790 1.11516 1.16101 2.95924 3.07663 3.21666 3.26743 3.31473
3.50519 3.61509 4.20415 4.35481 4.43887 4.64159 4.68179 4.71084
4.87326 4.95846 4.97410 5.01773 5.10626 5.13824 5.18282 5.23549
5.32163 5.36821 5.41381 5.49462 5.54342 5.60352 5.65670 5.70410
5.74092 5.85015 5.88398 5.89870 5.92254 5.99691 6.11349 6.12827
6.27446 6.30698 6.47162 6.68277 6.79074 7.58501 7.60647 8.35734
8.58801 9.24049 10.86124
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.022543 B = 0.002552 C = 0.002445
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1241.799994 B =10968.128862 C =11449.924336
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.084 4.084
3 C -0.121 4.121
4 C -0.123 4.123
5 C -0.124 4.124
6 C -0.109 4.109
7 C -0.073 4.073
8 C -0.052 4.052
9 C -0.126 4.126
10 C 0.108 3.892
11 N -0.620 5.620
12 C 0.535 3.465
13 O -0.518 6.518
14 C -0.150 4.150
15 S -0.062 6.062
16 C -0.533 4.533
17 H 0.073 0.927
18 C 0.073 3.927
19 N -0.867 5.867
20 Si 0.919 3.081
21 H -0.272 1.272
22 H -0.280 1.280
23 H -0.280 1.280
24 C 0.113 3.887
25 C -0.124 4.124
26 H 0.070 0.930
27 H 0.064 0.936
28 H 0.071 0.929
29 H 0.119 0.881
30 H 0.119 0.881
31 H 0.120 0.880
32 H 0.122 0.878
33 H 0.085 0.915
34 H 0.071 0.929
35 H 0.075 0.925
36 H 0.067 0.933
37 H 0.091 0.909
38 H 0.089 0.911
39 H 0.089 0.911
40 H 0.268 0.732
41 H 0.063 0.937
42 H 0.094 0.906
43 H 0.073 0.927
44 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.890 27.063 -0.756 27.511
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.084 4.084
3 C -0.139 4.139
4 C -0.141 4.141
5 C -0.142 4.142
6 C -0.127 4.127
7 C -0.073 4.073
8 C -0.071 4.071
9 C -0.164 4.164
10 C -0.015 4.015
11 N -0.356 5.356
12 C 0.323 3.677
13 O -0.392 6.392
14 C -0.301 4.301
15 S 0.164 5.836
16 C -0.682 4.682
17 H 0.091 0.909
18 C -0.136 4.136
19 N -0.503 5.503
20 Si 0.745 3.255
21 H -0.196 1.196
22 H -0.206 1.206
23 H -0.206 1.206
24 C -0.009 4.009
25 C -0.162 4.162
26 H 0.089 0.911
27 H 0.083 0.917
28 H 0.090 0.910
29 H 0.137 0.863
30 H 0.137 0.863
31 H 0.138 0.862
32 H 0.140 0.860
33 H 0.103 0.897
34 H 0.090 0.910
35 H 0.094 0.906
36 H 0.085 0.915
37 H 0.109 0.891
38 H 0.107 0.893
39 H 0.107 0.893
40 H 0.078 0.922
41 H 0.081 0.919
42 H 0.112 0.888
43 H 0.091 0.909
44 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -4.693 26.091 -2.452 26.623
hybrid contribution 0.255 0.319 2.432 2.466
sum -4.439 26.410 -0.020 26.780
Atomic orbital electron populations
1.20848 0.91376 1.02730 1.02448 1.19781 0.95957 0.92596 1.00107
1.21006 0.94281 0.97315 1.01327 1.21107 0.94324 0.97998 1.00706
1.21140 0.99889 0.92536 1.00637 1.21057 0.93757 0.98221 0.99663
1.19715 0.93633 0.94121 0.99815 1.20253 0.99812 0.91318 0.95668
1.21997 1.00947 0.95320 0.98171 1.21715 1.00196 0.94222 0.85375
1.48106 1.68168 1.12411 1.06932 1.20329 0.75664 0.80681 0.91041
1.90687 1.51554 1.68097 1.28895 1.23550 1.04273 1.04023 0.98234
1.85411 1.85449 1.00694 1.12010 1.22894 1.51861 1.00756 0.92664
0.90914 1.24996 0.94844 0.95893 0.97898 1.70029 1.43273 1.08711
1.28271 0.86119 0.78105 0.78895 0.82390 1.19613 1.20574 1.20574
1.21509 0.98283 0.91777 0.89381 1.21974 1.01555 0.95876 0.96780
0.91132 0.91734 0.91041 0.86321 0.86341 0.86210 0.85983 0.89692
0.91035 0.90648 0.91510 0.89072 0.89310 0.89303 0.92247 0.91916
0.88764 0.90856 0.91185
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.76 9.14 36.01 0.33 -0.43 16
2 C -0.08 -0.72 5.88 -104.62 -0.62 -1.33 16
3 C -0.12 -0.99 9.68 -39.58 -0.38 -1.37 16
4 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16
5 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16
6 C -0.11 -1.04 8.79 -39.58 -0.35 -1.39 16
7 C -0.07 -0.67 4.78 -104.63 -0.50 -1.17 16
8 C -0.05 -0.46 2.06 -91.73 -0.19 -0.65 16
9 C -0.13 -1.18 5.09 -26.61 -0.14 -1.31 16
10 C 0.11 1.17 6.34 -3.71 -0.02 1.15 16
11 N -0.62 -8.76 2.97 -172.77 -0.51 -9.27 16
12 C 0.53 10.24 7.72 -10.99 -0.08 10.16 16
13 O -0.52 -11.93 15.28 5.56 0.08 -11.85 16
14 C -0.15 -3.07 4.50 36.00 0.16 -2.90 16
15 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16
16 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16
17 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16
18 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16
19 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16
20 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16
21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
24 C 0.11 1.36 6.43 -3.71 -0.02 1.34 16
25 C -0.12 -1.22 5.21 -26.61 -0.14 -1.36 16
26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
27 H 0.06 0.35 8.04 -51.93 -0.42 -0.07 16
28 H 0.07 0.44 6.55 -51.93 -0.34 0.10 16
29 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16
30 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16
31 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16
32 H 0.12 1.15 7.14 -52.49 -0.37 0.77 16
33 H 0.08 0.67 5.72 -51.93 -0.30 0.37 16
34 H 0.07 0.74 7.17 -51.93 -0.37 0.37 16
35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16
37 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16
38 H 0.09 1.68 7.70 -51.91 -0.40 1.28 16
39 H 0.09 1.68 7.94 -51.92 -0.41 1.27 16
40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16
41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
42 H 0.09 1.33 7.01 -51.93 -0.36 0.96 16
43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
44 H 0.07 0.79 7.78 -51.93 -0.40 0.38 16
LS Contribution 365.57 15.07 5.51 5.51
Total: -1.00 -34.11 365.57 -10.58 -44.70
By element:
Atomic # 1 Polarization: 5.62 SS G_CDS: -6.62 Total: -0.99 kcal
Atomic # 6 Polarization: -12.53 SS G_CDS: -2.55 Total: -15.07 kcal
Atomic # 7 Polarization: -34.98 SS G_CDS: 0.22 Total: -34.76 kcal
Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.85 kcal
Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal
Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -34.11 -10.58 -44.70 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000170955369.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.102 kcal
(2) G-P(sol) polarization free energy of solvation -34.115 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.013 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.598 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds