Wall clock time and date at job start Tue Mar 31 2020 12:00:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38258 * 120.00023 * 2 1
4 4 C 1.38213 * 120.00155 * 180.34221 * 3 2 1
5 5 C 1.38255 * 119.99776 * 359.91069 * 4 3 2
6 6 C 1.38213 * 120.00160 * 0.04055 * 5 4 3
7 7 C 1.38209 * 119.99863 * 180.26872 * 2 1 3
8 8 C 1.50697 * 120.00160 * 359.70923 * 7 2 1
9 9 C 1.53046 * 109.45720 * 234.69021 * 8 7 2
10 10 C 1.53191 * 109.31105 * 178.59787 * 9 8 7
11 11 N 1.46929 * 108.76484 * 54.65243 * 10 9 8
12 12 C 1.34778 * 120.62867 * 126.40690 * 11 10 9
13 13 O 1.21283 * 119.99928 * 179.97438 * 12 11 10
14 14 C 1.50698 * 120.00250 * 359.97438 * 12 11 10
15 15 S 1.80995 * 109.47338 * 180.02562 * 14 12 11
16 16 C 1.76203 * 100.00177 * 179.97438 * 15 14 12
17 17 H 1.08000 * 119.99773 * 0.02562 * 16 15 14
18 18 C 1.38794 * 119.99932 * 179.97438 * 16 15 14
19 19 N 1.31633 * 120.00397 * 0.02562 * 18 16 15
20 20 Si 1.86806 * 119.99720 * 180.02562 * 18 16 15
21 21 H 1.48494 * 109.47327 * 0.02562 * 20 18 16
22 22 H 1.48497 * 109.46802 * 120.00454 * 20 18 16
23 23 H 1.48496 * 109.47091 * 240.00000 * 20 18 16
24 24 C 1.46927 * 118.74063 * 306.38074 * 11 10 9
25 25 C 1.53037 * 109.46439 * 114.63429 * 8 7 2
26 26 H 1.09000 * 109.47140 * 263.96837 * 1 2 3
27 27 H 1.09003 * 109.46667 * 23.96470 * 1 2 3
28 28 H 1.08999 * 109.47228 * 143.96313 * 1 2 3
29 29 H 1.08001 * 119.99941 * 0.27589 * 3 2 1
30 30 H 1.07995 * 120.00392 * 179.97438 * 4 3 2
31 31 H 1.08001 * 119.99869 * 180.02562 * 5 4 3
32 32 H 1.07997 * 120.00353 * 180.02562 * 6 5 4
33 33 H 1.09000 * 109.45988 * 354.65849 * 8 7 2
34 34 H 1.08995 * 109.49330 * 298.55970 * 9 8 7
35 35 H 1.08997 * 109.49861 * 58.65825 * 9 8 7
36 36 H 1.09002 * 109.59757 * 294.86713 * 10 9 8
37 37 H 1.08996 * 109.70576 * 174.50311 * 10 9 8
38 38 H 1.09001 * 109.46745 * 300.00279 * 14 12 11
39 39 H 1.08998 * 109.46933 * 59.99647 * 14 12 11
40 40 H 0.96996 * 120.00143 * 180.02562 * 19 18 16
41 41 H 1.08993 * 109.58762 * 293.82334 * 24 11 10
42 42 H 1.08999 * 109.58708 * 173.39324 * 24 11 10
43 43 H 1.08998 * 109.49328 * 301.33396 * 25 8 7
44 44 H 1.08998 * 109.49689 * 61.43388 * 25 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1983 1.1974 0.0000
4 6 3.5804 1.1974 -0.0071
5 6 4.2717 0.0001 -0.0124
6 6 3.5806 -1.1969 -0.0114
7 6 2.1980 -1.1969 -0.0056
8 6 1.4446 -2.5020 -0.0051
9 6 1.9172 -3.3631 1.1686
10 6 1.1247 -4.6739 1.1866
11 7 1.2519 -5.3213 -0.1262
12 6 1.6739 -6.5975 -0.2245
13 8 1.7743 -7.1208 -1.3140
14 6 2.0209 -7.3744 1.0193
15 16 2.5505 -9.0431 0.5604
16 6 2.8851 -9.7081 2.1575
17 1 2.7406 -9.0986 3.0373
18 6 3.3333 -11.0155 2.2849
19 7 3.5089 -11.7586 1.2126
20 14 3.6872 -11.7206 3.9781
21 1 3.4116 -10.6900 5.0111
22 1 2.8186 -12.9018 4.2138
23 1 5.1123 -12.1309 4.0555
24 6 0.9099 -4.5511 -1.3298
25 6 1.7047 -3.2415 -1.3195
26 1 -0.3633 -0.1080 1.0220
27 1 -0.3633 0.9391 -0.4174
28 1 -0.3633 -0.8310 -0.6046
29 1 1.6583 2.1327 0.0045
30 1 4.1205 2.1326 -0.0076
31 1 5.3517 0.0001 -0.0176
32 1 4.1206 -2.1322 -0.0151
33 1 0.3773 -2.3051 0.0957
34 1 2.9790 -3.5813 1.0552
35 1 1.7533 -2.8262 2.1029
36 1 0.0747 -4.4636 1.3900
37 1 1.5216 -5.3328 1.9589
38 1 2.8289 -6.8699 1.5491
39 1 1.1453 -7.4355 1.6656
40 1 3.8217 -12.6723 1.3017
41 1 -0.1575 -4.3308 -1.3316
42 1 1.1676 -5.1278 -2.2181
43 1 1.3895 -2.6181 -2.1561
44 1 2.7686 -3.4609 -1.4091
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000170955369.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:00:48
Heat of formation + Delta-G solvation = -44.299582 kcal
Electronic energy + Delta-G solvation = -23904.918072 eV
Core-core repulsion = 20525.685676 eV
Total energy + Delta-G solvation = -3379.232396 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 319.135 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.42487 -40.38723 -38.20268 -34.90013 -34.58639 -33.52476 -32.58754 -31.15442
-30.13800 -27.79934 -27.65021 -26.04833 -24.21643 -23.54165 -22.04887 -21.26224
-20.21947 -19.45679 -18.20595 -17.35172 -16.94856 -16.86830 -16.68052 -16.31559
-15.88236 -15.69404 -15.22484 -15.00371 -14.76867 -14.64402 -14.47395 -14.13196
-14.02252 -13.92539 -13.44676 -13.35181 -13.16081 -13.09650 -12.91925 -12.82186
-12.76126 -12.58879 -12.23780 -12.05722 -11.72902 -11.67806 -11.46768 -11.30054
-11.16196 -10.84785 -10.26278 -9.67899 -9.65240 -9.40657 -8.67960 -8.34973
-6.13444 0.48211 0.52260 1.25681 1.41406 1.45999 1.57058 1.57945
2.11722 2.27048 2.86772 2.99213 3.24966 3.60620 3.66287 3.77184
3.99409 4.06937 4.10205 4.13256 4.24265 4.26120 4.30662 4.34279
4.44207 4.47963 4.49941 4.64193 4.73563 4.79008 4.83780 4.89641
4.90162 4.92695 5.01947 5.04849 5.12862 5.23088 5.34758 5.39341
5.41673 5.59572 5.65769 5.67530 5.82338 6.18220 6.19760 6.29770
7.06266 7.14827 8.74593
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.022543 B = 0.002552 C = 0.002445
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1241.799994 B =10968.128862 C =11449.924336
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.090 4.090
3 C -0.129 4.129
4 C -0.129 4.129
5 C -0.138 4.138
6 C -0.125 4.125
7 C -0.083 4.083
8 C -0.044 4.044
9 C -0.120 4.120
10 C 0.101 3.899
11 N -0.606 5.606
12 C 0.532 3.468
13 O -0.568 6.568
14 C -0.123 4.123
15 S -0.155 6.155
16 C -0.543 4.543
17 H 0.083 0.917
18 C 0.012 3.988
19 N -0.912 5.912
20 Si 1.000 3.000
21 H -0.256 1.256
22 H -0.274 1.274
23 H -0.274 1.274
24 C 0.111 3.889
25 C -0.114 4.114
26 H 0.078 0.922
27 H 0.075 0.925
28 H 0.075 0.925
29 H 0.138 0.862
30 H 0.137 0.863
31 H 0.128 0.872
32 H 0.113 0.887
33 H 0.104 0.896
34 H 0.056 0.944
35 H 0.094 0.906
36 H 0.096 0.904
37 H 0.088 0.912
38 H 0.105 0.895
39 H 0.108 0.892
40 H 0.271 0.729
41 H 0.090 0.910
42 H 0.068 0.932
43 H 0.088 0.912
44 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.126 29.659 1.366 30.315
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.090 4.090
3 C -0.147 4.147
4 C -0.146 4.146
5 C -0.156 4.156
6 C -0.143 4.143
7 C -0.083 4.083
8 C -0.062 4.062
9 C -0.158 4.158
10 C -0.021 4.021
11 N -0.340 5.340
12 C 0.319 3.681
13 O -0.447 6.447
14 C -0.274 4.274
15 S 0.073 5.927
16 C -0.691 4.691
17 H 0.101 0.899
18 C -0.193 4.193
19 N -0.548 5.548
20 Si 0.821 3.179
21 H -0.179 1.179
22 H -0.199 1.199
23 H -0.200 1.200
24 C -0.011 4.011
25 C -0.153 4.153
26 H 0.097 0.903
27 H 0.093 0.907
28 H 0.093 0.907
29 H 0.156 0.844
30 H 0.155 0.845
31 H 0.146 0.854
32 H 0.132 0.868
33 H 0.122 0.878
34 H 0.075 0.925
35 H 0.112 0.888
36 H 0.114 0.886
37 H 0.106 0.894
38 H 0.123 0.877
39 H 0.126 0.874
40 H 0.080 0.920
41 H 0.108 0.892
42 H 0.086 0.914
43 H 0.107 0.893
44 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -5.947 28.752 -0.312 29.363
hybrid contribution 0.611 -0.301 1.729 1.858
sum -5.336 28.452 1.418 28.982
Atomic orbital electron populations
1.20896 0.89794 1.03557 1.03130 1.20069 0.97203 0.92344 0.99390
1.21324 0.94438 0.98144 1.00765 1.21395 0.94766 0.98468 1.00019
1.21345 1.00586 0.92719 1.00945 1.21137 0.94347 0.98262 1.00596
1.19741 0.93420 0.94529 1.00577 1.20200 1.00802 0.90869 0.94351
1.21952 0.99778 0.94683 0.99431 1.22035 1.02281 0.94509 0.83244
1.48121 1.65854 1.10756 1.09241 1.20135 0.76023 0.82208 0.89704
1.90670 1.54209 1.69669 1.30190 1.23364 1.05294 0.99456 0.99276
1.85604 1.86355 1.06711 1.14056 1.23210 1.51887 1.01355 0.92614
0.89906 1.26149 0.94285 0.96237 1.02583 1.70194 1.44331 1.09210
1.31111 0.84890 0.78004 0.78232 0.76725 1.17923 1.19901 1.19970
1.21693 1.00179 0.91851 0.87427 1.21887 0.99987 0.94980 0.98414
0.90305 0.90654 0.90650 0.84396 0.84547 0.85382 0.86847 0.87838
0.92547 0.88757 0.88606 0.89373 0.87690 0.87366 0.92001 0.89159
0.91364 0.89337 0.93108
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.11 9.14 71.24 0.65 -0.46 16
2 C -0.09 -1.29 5.88 -19.87 -0.12 -1.41 16
3 C -0.13 -1.77 9.68 22.27 0.22 -1.56 16
4 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16
5 C -0.14 -2.30 10.05 22.27 0.22 -2.07 16
6 C -0.13 -2.30 8.79 22.27 0.20 -2.11 16
7 C -0.08 -1.36 4.78 -19.87 -0.10 -1.46 16
8 C -0.04 -0.67 2.06 -11.51 -0.02 -0.69 16
9 C -0.12 -1.97 5.09 30.67 0.16 -1.82 16
10 C 0.10 1.93 6.34 86.36 0.55 2.48 16
11 N -0.61 -16.46 2.97 -818.91 -2.43 -18.89 16
12 C 0.53 20.57 7.72 87.66 0.68 21.25 16
13 O -0.57 -27.32 15.28 -3.04 -0.05 -27.36 16
14 C -0.12 -5.01 4.50 71.24 0.32 -4.69 16
15 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16
16 C -0.54 -31.19 9.50 67.95 0.65 -30.54 16
17 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16
18 C 0.01 0.69 5.49 84.86 0.47 1.16 16
19 N -0.91 -56.45 13.22 21.65 0.29 -56.16 16
20 Si 1.00 43.74 29.55 68.60 2.03 45.77 16
21 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16
22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16
23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
24 C 0.11 2.54 6.43 86.36 0.56 3.09 16
25 C -0.11 -2.12 5.21 30.67 0.16 -1.96 16
26 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16
27 H 0.07 0.56 8.04 -2.39 -0.02 0.54 16
28 H 0.07 0.66 6.55 -2.39 -0.02 0.64 16
29 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16
30 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16
31 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16
32 H 0.11 2.18 7.14 -2.91 -0.02 2.16 16
33 H 0.10 1.22 5.72 -2.39 -0.01 1.21 16
34 H 0.06 1.11 7.17 -2.39 -0.02 1.10 16
35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16
36 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16
37 H 0.09 1.77 5.93 -2.39 -0.01 1.75 16
38 H 0.10 3.91 7.70 -2.39 -0.02 3.89 16
39 H 0.11 3.97 7.94 -2.40 -0.02 3.95 16
40 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16
41 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16
42 H 0.07 1.96 7.01 -2.39 -0.02 1.95 16
43 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16
44 H 0.05 1.14 7.78 -2.39 -0.02 1.12 16
Total: -1.00 -76.96 365.57 4.46 -72.50
By element:
Atomic # 1 Polarization: 15.48 SS G_CDS: 0.99 Total: 16.47 kcal
Atomic # 6 Polarization: -27.23 SS G_CDS: 4.80 Total: -22.43 kcal
Atomic # 7 Polarization: -72.91 SS G_CDS: -2.15 Total: -75.05 kcal
Atomic # 8 Polarization: -27.32 SS G_CDS: -0.05 Total: -27.36 kcal
Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal
Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal
Total: -76.96 4.46 -72.50 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000170955369.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.201 kcal
(2) G-P(sol) polarization free energy of solvation -76.960 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.759 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.501 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.300 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds