Wall clock time and date at job start Tue Mar 31 2020 13:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47077 * 2 1 4 4 C 1.52994 * 109.46942 * 119.99938 * 2 1 3 5 5 H 1.08997 * 109.58476 * 59.72681 * 4 2 1 6 6 C 1.53245 * 109.58112 * 180.02562 * 4 2 1 7 7 N 1.46384 * 109.48528 * 177.45314 * 6 4 2 8 8 C 1.34770 * 119.64495 * 114.93690 * 7 6 4 9 9 O 1.21551 * 120.00372 * 355.45120 * 8 7 6 10 10 C 1.47885 * 120.00080 * 175.45894 * 8 7 6 11 11 C 1.39925 * 120.02788 * 227.79143 * 10 8 7 12 12 C 1.38327 * 120.35954 * 180.02562 * 11 10 8 13 13 C 1.37754 * 120.41026 * 359.97438 * 12 11 10 14 14 C 1.40745 * 120.04115 * 0.02562 * 13 12 11 15 15 C 1.41441 * 120.17515 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99843 * 204.89071 * 15 14 13 17 17 C 1.39939 * 120.00239 * 24.89283 * 15 14 13 18 18 N 1.30830 * 120.00067 * 17.20388 * 17 15 14 19 19 Si 1.86801 * 119.99952 * 197.20003 * 17 15 14 20 20 H 1.48502 * 109.46793 * 94.96529 * 19 17 15 21 21 H 1.48499 * 109.47054 * 214.96263 * 19 17 15 22 22 H 1.48488 * 109.47226 * 334.96329 * 19 17 15 23 23 C 1.38996 * 120.02489 * 47.51061 * 10 8 7 24 24 C 1.46376 * 120.70474 * 294.90577 * 7 6 4 25 25 C 1.53235 * 109.48732 * 65.09260 * 24 7 6 26 26 S 1.81738 * 108.80037 * 302.34309 * 25 24 7 27 27 H 1.08997 * 109.47188 * 300.00288 * 1 2 3 28 28 H 1.08998 * 109.47036 * 59.99614 * 1 2 3 29 29 H 1.08997 * 109.46937 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46908 * 240.00180 * 2 1 3 31 31 H 1.09004 * 109.47387 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47502 * 300.00100 * 3 2 1 33 33 H 1.09006 * 109.47160 * 59.99647 * 3 2 1 34 34 H 1.08997 * 109.46491 * 297.45150 * 6 4 2 35 35 H 1.08991 * 109.46931 * 57.44854 * 6 4 2 36 36 H 1.07997 * 119.81838 * 359.97438 * 11 10 8 37 37 H 1.07998 * 119.79181 * 179.97438 * 12 11 10 38 38 H 1.08010 * 119.97777 * 179.97438 * 13 12 11 39 39 H 0.96994 * 120.00322 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.20537 * 0.02562 * 23 10 8 41 41 H 1.09000 * 109.46576 * 185.09790 * 24 7 6 42 42 H 1.09002 * 109.47207 * 305.08499 * 24 7 6 43 43 H 1.09006 * 109.58203 * 62.13371 * 25 24 7 44 44 H 1.08994 * 109.58700 * 182.41087 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6737 -1.7478 1.2535 6 6 3.5724 -0.7222 1.2521 7 7 4.0580 -1.3588 2.4776 8 6 4.7453 -2.5155 2.4005 9 8 4.8880 -3.0674 1.3270 10 6 5.3259 -3.1134 3.6222 11 6 6.6542 -3.5533 3.6233 12 6 7.2040 -4.1141 4.7620 13 6 6.4509 -4.2456 5.9079 14 6 5.1131 -3.8088 5.9258 15 6 4.3374 -3.9419 7.1011 16 1 3.2610 -3.9983 7.0341 17 6 4.9647 -4.0006 8.3506 18 7 6.2045 -3.6030 8.4795 19 14 4.0319 -4.6466 9.8346 20 1 4.3261 -6.0911 10.0137 21 1 4.4543 -3.9013 11.0476 22 1 2.5741 -4.4609 9.6221 23 6 4.5543 -3.2335 4.7720 24 6 3.8055 -0.7522 3.7856 25 6 2.2994 -0.7546 4.0680 26 16 1.4521 0.1445 2.7352 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.9369 -1.2752 0.3865 35 1 3.9364 0.3042 1.2072 36 1 7.2531 -3.4553 2.7300 37 1 8.2301 -4.4510 4.7525 38 1 6.8872 -4.6849 6.7930 39 1 6.6394 -3.6440 9.3455 40 1 3.5298 -2.8916 4.7771 41 1 4.3208 -1.3246 4.5569 42 1 4.1739 0.2736 3.7875 43 1 1.9362 -1.7817 4.1042 44 1 2.1059 -0.2649 5.0223 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174299361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:37 Heat of formation + Delta-G solvation = -32.795713 kcal Electronic energy + Delta-G solvation = -24893.198488 eV Core-core repulsion = 21514.464938 eV Total energy + Delta-G solvation = -3378.733551 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.48477 -39.09110 -38.13452 -36.81997 -35.55480 -32.42764 -31.86083 -31.60118 -29.97547 -28.08676 -27.25624 -25.37414 -24.70514 -23.17527 -22.68048 -21.32158 -20.75065 -19.14082 -18.06037 -17.57398 -17.27184 -16.91881 -16.71349 -16.36066 -16.21759 -15.61445 -15.22620 -15.11451 -14.72116 -14.61481 -14.29496 -14.24820 -13.86523 -13.68828 -13.53363 -13.37255 -12.98225 -12.93542 -12.87917 -12.78108 -12.59504 -12.26359 -12.22695 -12.06483 -12.01812 -11.73665 -11.71856 -11.40683 -11.07542 -10.84066 -10.69917 -9.98855 -9.46546 -9.39558 -8.66709 -8.61353 -6.38964 0.48344 0.68466 0.89645 1.41668 1.46237 1.49117 1.53931 1.72643 1.90987 2.21229 2.69693 3.47027 3.56039 3.61523 3.72133 3.86074 3.96329 4.01839 4.14864 4.30940 4.36607 4.40365 4.50147 4.54998 4.63677 4.69909 4.73397 4.83860 4.87180 4.93639 5.00456 5.01886 5.03857 5.14551 5.18071 5.29105 5.37099 5.41211 5.47365 5.51797 5.75904 5.95554 5.99779 6.15446 6.21108 6.58786 6.87600 6.90434 7.01216 8.30426 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.003792 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.544753 B = 7382.352201 C = 8547.730355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C -0.149 4.149 4 C -0.058 4.058 5 H 0.070 0.930 6 C 0.111 3.889 7 N -0.606 5.606 8 C 0.568 3.432 9 O -0.578 6.578 10 C -0.114 4.114 11 C -0.196 4.196 12 C -0.108 4.108 13 C -0.164 4.164 14 C 0.081 3.919 15 C -0.490 4.490 16 H 0.080 0.920 17 C 0.042 3.958 18 N -0.819 5.819 19 Si 0.977 3.023 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.258 1.258 23 C -0.197 4.197 24 C 0.087 3.913 25 C -0.103 4.103 26 S -0.234 6.234 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.290 0.710 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.783 9.314 -8.233 14.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.091 4.091 3 C -0.207 4.207 4 C -0.188 4.188 5 H 0.089 0.911 6 C -0.012 4.012 7 N -0.337 5.337 8 C 0.359 3.641 9 O -0.458 6.458 10 C -0.117 4.117 11 C -0.216 4.216 12 C -0.126 4.126 13 C -0.184 4.184 14 C 0.079 3.921 15 C -0.519 4.519 16 H 0.098 0.902 17 C -0.174 4.174 18 N -0.444 5.444 19 Si 0.798 3.202 20 H -0.191 1.191 21 H -0.193 1.193 22 H -0.181 1.181 23 C -0.217 4.217 24 C -0.036 4.036 25 C -0.251 4.251 26 S -0.007 6.007 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.101 0.899 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.258 9.975 -8.526 15.504 hybrid contribution 0.759 -1.637 0.792 1.971 sum -7.499 8.338 -7.734 13.622 Atomic orbital electron populations 1.21846 0.93738 1.02008 1.02650 1.20962 0.96962 0.97014 0.94187 1.21951 1.01355 0.94530 1.02822 1.23716 0.97223 1.01350 0.96461 0.91116 1.21930 0.92485 0.99534 0.87281 1.47881 1.54525 1.22928 1.08388 1.18892 0.76647 0.80088 0.88509 1.90653 1.61631 1.62384 1.31175 1.19478 0.95878 1.03523 0.92831 1.20529 0.94470 1.08248 0.98312 1.20880 0.99248 0.99570 0.92889 1.21530 0.95940 1.03526 0.97364 1.17833 0.92746 0.88824 0.92692 1.19796 0.95058 1.46050 0.90955 0.90161 1.26646 0.95666 0.91984 1.03121 1.69833 1.13660 1.33287 1.27650 0.85253 0.79545 0.78945 0.76438 1.19144 1.19305 1.18117 1.21273 0.99754 1.07460 0.93168 1.22321 0.95411 1.00806 0.85096 1.23885 0.96871 1.03369 1.01026 1.86521 1.64436 1.48382 1.01350 0.92325 0.90758 0.93038 0.89200 0.92166 0.90965 0.91957 0.89188 0.88012 0.87765 0.86291 0.87194 0.89918 0.86758 0.87126 0.88678 0.90815 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.97 71.98 0.65 -1.79 16 2 C -0.07 -1.29 2.75 -10.79 -0.03 -1.32 16 3 C -0.15 -2.35 8.60 71.98 0.62 -1.73 16 4 C -0.06 -1.37 2.56 30.67 0.08 -1.29 16 5 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 6 C 0.11 2.96 5.22 86.48 0.45 3.42 16 7 N -0.61 -19.79 2.79 -824.87 -2.30 -22.09 16 8 C 0.57 23.26 7.23 86.80 0.63 23.89 16 9 O -0.58 -26.34 16.33 -3.88 -0.06 -26.41 16 10 C -0.11 -5.06 5.12 -20.13 -0.10 -5.17 16 11 C -0.20 -8.76 9.71 22.70 0.22 -8.53 16 12 C -0.11 -4.84 10.01 22.18 0.22 -4.62 16 13 C -0.16 -8.13 8.69 22.77 0.20 -7.93 16 14 C 0.08 4.06 5.57 -21.32 -0.12 3.94 16 15 C -0.49 -24.16 9.05 23.47 0.21 -23.95 16 16 H 0.08 3.81 7.90 -2.91 -0.02 3.79 16 17 C 0.04 1.95 5.15 85.25 0.44 2.39 16 18 N -0.82 -39.58 10.94 21.83 0.24 -39.35 16 19 Si 0.98 35.58 29.59 68.60 2.03 37.61 16 20 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 21 H -0.27 -9.34 7.11 99.48 0.71 -8.64 16 22 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 23 C -0.20 -8.90 7.02 23.01 0.16 -8.74 16 24 C 0.09 2.60 5.42 86.48 0.47 3.07 16 25 C -0.10 -2.72 6.27 72.06 0.45 -2.27 16 26 S -0.23 -5.57 18.74 -56.49 -1.06 -6.63 16 27 H 0.06 1.08 6.95 -2.39 -0.02 1.07 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 0.94 6.38 -2.38 -0.02 0.92 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.09 6.90 -2.38 -0.02 1.07 16 34 H 0.09 2.63 6.90 -2.39 -0.02 2.61 16 35 H 0.10 2.32 6.31 -2.39 -0.02 2.31 16 36 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 38 H 0.11 5.65 6.15 -2.91 -0.02 5.63 16 39 H 0.29 12.69 8.30 -92.71 -0.77 11.92 16 40 H 0.11 4.77 5.46 -2.91 -0.02 4.76 16 41 H 0.11 3.93 4.04 -2.39 -0.01 3.92 16 42 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.07 2.17 7.26 -2.38 -0.02 2.15 16 44 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -56.98 352.73 4.40 -52.58 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: 1.00 Total: 34.92 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 4.54 Total: -30.63 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -2.06 Total: -61.44 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.06 Total: -26.41 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.61 kcal Atomic # 16 Polarization: -5.57 SS G_CDS: -1.06 Total: -6.63 kcal Total: -56.98 4.40 -52.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174299361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.786 kcal (2) G-P(sol) polarization free energy of solvation -56.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds